data_3GRZ # _model_server_result.job_id d38mT3z4f7JiCrUDIrovMQ _model_server_result.datetime_utc '2024-12-01 01:28:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3grz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":322}' # _entry.id 3GRZ # _exptl.entry_id 3GRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.92 _cell.angle_gamma 90 _cell.entry_id 3GRZ _cell.length_a 148.979 _cell.length_b 56.055 _cell.length_c 54.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3GRZ _atom_sites.fract_transf_matrix[1][1] 0.006712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1 1 GOL GOL . D 2 GOL A 1 322 1 GOL GOL . E 2 GOL B 1 1 1 GOL GOL . F 3 HOH A 1 7 7 HOH HOH . F 3 HOH A 2 10 10 HOH HOH . F 3 HOH A 3 13 13 HOH HOH . F 3 HOH A 4 14 14 HOH HOH . F 3 HOH A 5 19 19 HOH HOH . F 3 HOH A 6 21 21 HOH HOH . F 3 HOH A 7 22 22 HOH HOH . F 3 HOH A 8 23 23 HOH HOH . F 3 HOH A 9 31 31 HOH HOH . F 3 HOH A 10 33 33 HOH HOH . F 3 HOH A 11 34 34 HOH HOH . F 3 HOH A 12 36 36 HOH HOH . F 3 HOH A 13 38 38 HOH HOH . F 3 HOH A 14 39 39 HOH HOH . F 3 HOH A 15 40 40 HOH HOH . F 3 HOH A 16 41 41 HOH HOH . F 3 HOH A 17 44 44 HOH HOH . F 3 HOH A 18 45 45 HOH HOH . F 3 HOH A 19 46 46 HOH HOH . F 3 HOH A 20 52 52 HOH HOH . F 3 HOH A 21 54 54 HOH HOH . F 3 HOH A 22 63 63 HOH HOH . F 3 HOH A 23 64 64 HOH HOH . F 3 HOH A 24 68 68 HOH HOH . F 3 HOH A 25 75 75 HOH HOH . F 3 HOH A 26 76 76 HOH HOH . F 3 HOH A 27 86 86 HOH HOH . F 3 HOH A 28 87 87 HOH HOH . F 3 HOH A 29 88 88 HOH HOH . F 3 HOH A 30 90 90 HOH HOH . F 3 HOH A 31 93 93 HOH HOH . F 3 HOH A 32 94 94 HOH HOH . F 3 HOH A 33 95 95 HOH HOH . F 3 HOH A 34 98 98 HOH HOH . F 3 HOH A 35 100 100 HOH HOH . F 3 HOH A 36 101 101 HOH HOH . F 3 HOH A 37 104 104 HOH HOH . F 3 HOH A 38 106 106 HOH HOH . F 3 HOH A 39 107 107 HOH HOH . F 3 HOH A 40 108 108 HOH HOH . F 3 HOH A 41 110 110 HOH HOH . F 3 HOH A 42 323 1 HOH HOH . F 3 HOH A 43 324 117 HOH HOH . F 3 HOH A 44 325 121 HOH HOH . F 3 HOH A 45 326 126 HOH HOH . F 3 HOH A 46 327 128 HOH HOH . F 3 HOH A 47 328 129 HOH HOH . F 3 HOH A 48 329 130 HOH HOH . F 3 HOH A 49 330 131 HOH HOH . F 3 HOH A 50 331 134 HOH HOH . F 3 HOH A 51 332 135 HOH HOH . F 3 HOH A 52 333 136 HOH HOH . F 3 HOH A 53 334 138 HOH HOH . F 3 HOH A 54 335 141 HOH HOH . F 3 HOH A 55 336 143 HOH HOH . F 3 HOH A 56 337 146 HOH HOH . F 3 HOH A 57 338 147 HOH HOH . F 3 HOH A 58 339 149 HOH HOH . F 3 HOH A 59 340 150 HOH HOH . F 3 HOH A 60 341 151 HOH HOH . F 3 HOH A 61 342 152 HOH HOH . F 3 HOH A 62 343 153 HOH HOH . F 3 HOH A 63 344 154 HOH HOH . F 3 HOH A 64 345 156 HOH HOH . F 3 HOH A 65 346 158 HOH HOH . F 3 HOH A 66 347 159 HOH HOH . F 3 HOH A 67 348 160 HOH HOH . F 3 HOH A 68 349 167 HOH HOH . F 3 HOH A 69 350 168 HOH HOH . F 3 HOH A 70 351 169 HOH HOH . F 3 HOH A 71 352 170 HOH HOH . F 3 HOH A 72 353 171 HOH HOH . F 3 HOH A 73 354 172 HOH HOH . F 3 HOH A 74 355 174 HOH HOH . F 3 HOH A 75 356 175 HOH HOH . F 3 HOH A 76 357 176 HOH HOH . F 3 HOH A 77 358 177 HOH HOH . F 3 HOH A 78 359 178 HOH HOH . F 3 HOH A 79 360 179 HOH HOH . F 3 HOH A 80 361 180 HOH HOH . F 3 HOH A 81 362 181 HOH HOH . F 3 HOH A 82 363 182 HOH HOH . F 3 HOH A 83 364 183 HOH HOH . F 3 HOH A 84 365 184 HOH HOH . F 3 HOH A 85 366 185 HOH HOH . F 3 HOH A 86 367 186 HOH HOH . F 3 HOH A 87 368 208 HOH HOH . F 3 HOH A 88 369 210 HOH HOH . F 3 HOH A 89 370 212 HOH HOH . F 3 HOH A 90 371 213 HOH HOH . F 3 HOH A 91 372 214 HOH HOH . F 3 HOH A 92 373 215 HOH HOH . F 3 HOH A 93 374 216 HOH HOH . F 3 HOH A 94 375 217 HOH HOH . F 3 HOH A 95 376 218 HOH HOH . F 3 HOH A 96 377 219 HOH HOH . F 3 HOH A 97 378 220 HOH HOH . F 3 HOH A 98 379 221 HOH HOH . F 3 HOH A 99 380 222 HOH HOH . F 3 HOH A 100 381 223 HOH HOH . F 3 HOH A 101 382 224 HOH HOH . F 3 HOH A 102 383 225 HOH HOH . F 3 HOH A 103 384 226 HOH HOH . F 3 HOH A 104 385 227 HOH HOH . F 3 HOH A 105 386 244 HOH HOH . F 3 HOH A 106 387 247 HOH HOH . G 3 HOH B 1 2 2 HOH HOH . G 3 HOH B 2 3 3 HOH HOH . G 3 HOH B 3 4 4 HOH HOH . G 3 HOH B 4 5 5 HOH HOH . G 3 HOH B 5 6 6 HOH HOH . G 3 HOH B 6 8 8 HOH HOH . G 3 HOH B 7 9 9 HOH HOH . G 3 HOH B 8 11 11 HOH HOH . G 3 HOH B 9 12 12 HOH HOH . G 3 HOH B 10 15 15 HOH HOH . G 3 HOH B 11 16 16 HOH HOH . G 3 HOH B 12 17 17 HOH HOH . G 3 HOH B 13 20 20 HOH HOH . G 3 HOH B 14 24 24 HOH HOH . G 3 HOH B 15 25 25 HOH HOH . G 3 HOH B 16 26 26 HOH HOH . G 3 HOH B 17 27 27 HOH HOH . G 3 HOH B 18 30 30 HOH HOH . G 3 HOH B 19 32 32 HOH HOH . G 3 HOH B 20 35 35 HOH HOH . G 3 HOH B 21 37 37 HOH HOH . G 3 HOH B 22 42 42 HOH HOH . G 3 HOH B 23 43 43 HOH HOH . G 3 HOH B 24 47 47 HOH HOH . G 3 HOH B 25 51 51 HOH HOH . G 3 HOH B 26 53 53 HOH HOH . G 3 HOH B 27 55 55 HOH HOH . G 3 HOH B 28 56 56 HOH HOH . G 3 HOH B 29 57 57 HOH HOH . G 3 HOH B 30 58 58 HOH HOH . G 3 HOH B 31 59 59 HOH HOH . G 3 HOH B 32 61 61 HOH HOH . G 3 HOH B 33 62 62 HOH HOH . G 3 HOH B 34 65 65 HOH HOH . G 3 HOH B 35 66 66 HOH HOH . G 3 HOH B 36 70 70 HOH HOH . G 3 HOH B 37 71 71 HOH HOH . G 3 HOH B 38 72 72 HOH HOH . G 3 HOH B 39 73 73 HOH HOH . G 3 HOH B 40 78 78 HOH HOH . G 3 HOH B 41 79 79 HOH HOH . G 3 HOH B 42 81 81 HOH HOH . G 3 HOH B 43 82 82 HOH HOH . G 3 HOH B 44 83 83 HOH HOH . G 3 HOH B 45 85 85 HOH HOH . G 3 HOH B 46 89 89 HOH HOH . G 3 HOH B 47 91 91 HOH HOH . G 3 HOH B 48 92 92 HOH HOH . G 3 HOH B 49 97 97 HOH HOH . G 3 HOH B 50 99 99 HOH HOH . G 3 HOH B 51 102 102 HOH HOH . G 3 HOH B 52 103 103 HOH HOH . G 3 HOH B 53 105 105 HOH HOH . G 3 HOH B 54 109 109 HOH HOH . G 3 HOH B 55 111 111 HOH HOH . G 3 HOH B 56 112 112 HOH HOH . G 3 HOH B 57 113 113 HOH HOH . G 3 HOH B 58 114 114 HOH HOH . G 3 HOH B 59 115 115 HOH HOH . G 3 HOH B 60 116 116 HOH HOH . G 3 HOH B 61 322 118 HOH HOH . G 3 HOH B 62 323 120 HOH HOH . G 3 HOH B 63 324 122 HOH HOH . G 3 HOH B 64 325 123 HOH HOH . G 3 HOH B 65 326 124 HOH HOH . G 3 HOH B 66 327 125 HOH HOH . G 3 HOH B 67 328 127 HOH HOH . G 3 HOH B 68 329 132 HOH HOH . G 3 HOH B 69 330 133 HOH HOH . G 3 HOH B 70 331 137 HOH HOH . G 3 HOH B 71 332 140 HOH HOH . G 3 HOH B 72 333 142 HOH HOH . G 3 HOH B 73 334 144 HOH HOH . G 3 HOH B 74 335 145 HOH HOH . G 3 HOH B 75 336 148 HOH HOH . G 3 HOH B 76 337 155 HOH HOH . G 3 HOH B 77 338 157 HOH HOH . G 3 HOH B 78 339 161 HOH HOH . G 3 HOH B 79 340 162 HOH HOH . G 3 HOH B 80 341 163 HOH HOH . G 3 HOH B 81 342 166 HOH HOH . G 3 HOH B 82 343 187 HOH HOH . G 3 HOH B 83 344 188 HOH HOH . G 3 HOH B 84 345 189 HOH HOH . G 3 HOH B 85 346 190 HOH HOH . G 3 HOH B 86 347 191 HOH HOH . G 3 HOH B 87 348 192 HOH HOH . G 3 HOH B 88 349 193 HOH HOH . G 3 HOH B 89 350 194 HOH HOH . G 3 HOH B 90 351 195 HOH HOH . G 3 HOH B 91 352 196 HOH HOH . G 3 HOH B 92 353 197 HOH HOH . G 3 HOH B 93 354 198 HOH HOH . G 3 HOH B 94 355 199 HOH HOH . G 3 HOH B 95 356 200 HOH HOH . G 3 HOH B 96 357 201 HOH HOH . G 3 HOH B 97 358 202 HOH HOH . G 3 HOH B 98 359 203 HOH HOH . G 3 HOH B 99 360 204 HOH HOH . G 3 HOH B 100 361 205 HOH HOH . G 3 HOH B 101 362 206 HOH HOH . G 3 HOH B 102 363 207 HOH HOH . G 3 HOH B 103 364 211 HOH HOH . G 3 HOH B 104 365 228 HOH HOH . G 3 HOH B 105 366 229 HOH HOH . G 3 HOH B 106 367 230 HOH HOH . G 3 HOH B 107 368 231 HOH HOH . G 3 HOH B 108 369 232 HOH HOH . G 3 HOH B 109 370 233 HOH HOH . G 3 HOH B 110 371 234 HOH HOH . G 3 HOH B 111 372 235 HOH HOH . G 3 HOH B 112 373 236 HOH HOH . G 3 HOH B 113 374 237 HOH HOH . G 3 HOH B 114 375 238 HOH HOH . G 3 HOH B 115 376 239 HOH HOH . G 3 HOH B 116 377 240 HOH HOH . G 3 HOH B 117 378 241 HOH HOH . G 3 HOH B 118 379 242 HOH HOH . G 3 HOH B 119 380 243 HOH HOH . G 3 HOH B 120 381 245 HOH HOH . G 3 HOH B 121 382 246 HOH HOH . G 3 HOH B 122 383 248 HOH HOH . G 3 HOH B 123 384 249 HOH HOH . G 3 HOH B 124 385 250 HOH HOH . G 3 HOH B 125 386 251 HOH HOH . G 3 HOH B 126 387 252 HOH HOH . G 3 HOH B 127 388 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 34.672 35.188 12.538 1 70.2 ? C1 GOL 322 A 1 HETATM 2 O O1 GOL . . . D 2 34.39 33.865 12.125 1 74.66 ? O1 GOL 322 A 1 HETATM 3 C C2 GOL . . . D 2 35.321 35.987 11.408 1 68.3 ? C2 GOL 322 A 1 HETATM 4 O O2 GOL . . . D 2 34.591 35.831 10.209 1 72.65 ? O2 GOL 322 A 1 HETATM 5 C C3 GOL . . . D 2 35.271 37.457 11.792 1 68.41 ? C3 GOL 322 A 1 HETATM 6 O O3 GOL . . . D 2 36.544 38.08 11.861 1 46.11 ? O3 GOL 322 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #