data_3GS4 # _model_server_result.job_id SO8erJfdyocRxPHirGLpgQ _model_server_result.datetime_utc '2024-11-27 16:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 3GS4 # _exptl.entry_id 3GS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.279 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[(9H-fluoren-9-ylideneamino)oxy]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GS4 _cell.length_a 43.185 _cell.length_b 85.726 _cell.length_c 64.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.185 85.726 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H13 N O3' _chem_comp.formula_weight 267.279 _chem_comp.id 7BD _chem_comp.mon_nstd_flag . _chem_comp.name '3-[(9H-fluoren-9-ylideneamino)oxy]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-(9H-fluoren-9-ylideneaminooxy)propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C5 7BD doub 1 n y C2 C1 7BD sing 2 n n C2 C3 7BD sing 3 n n C3 C4 7BD doub 4 n y C4 C6 7BD sing 5 n y C5 C4 7BD sing 6 n y C5 C10 7BD sing 7 n y C6 H6 7BD sing 8 n n C10 H10 7BD sing 9 n n C11 C1 7BD sing 10 n y C11 C12 7BD doub 11 n y C11 H11 7BD sing 12 n n C12 C13 7BD sing 13 n y C12 H12 7BD sing 14 n n C13 C10 7BD doub 15 n y C13 H13 7BD sing 16 n n C16 O15 7BD sing 17 n n C16 H16 7BD sing 18 n n C16 H16A 7BD sing 19 n n C17 C16 7BD sing 20 n n C17 H17 7BD sing 21 n n C17 H17A 7BD sing 22 n n C18 C17 7BD sing 23 n n C7 C3 7BD sing 24 n y C7 C8 7BD doub 25 n y C7 H7 7BD sing 26 n n C8 C9 7BD sing 27 n y C8 H8 7BD sing 28 n n C9 C6 7BD doub 29 n y C9 H9 7BD sing 30 n n N14 C2 7BD doub 31 n n O15 N14 7BD sing 32 n n O19 C18 7BD sing 33 n n O19 HO19 7BD sing 34 n n O20 C18 7BD doub 35 n n # _atom_sites.entry_id 3GS4 _atom_sites.fract_transf_matrix[1][1] 0.023156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7BD A 1 501 501 7BD NEW . D 2 7BD B 1 500 500 7BD NEW . E 3 HOH A 1 128 1 HOH HOH . E 3 HOH A 2 129 3 HOH HOH . E 3 HOH A 3 130 4 HOH HOH . E 3 HOH A 4 131 10 HOH HOH . E 3 HOH A 5 132 11 HOH HOH . E 3 HOH A 6 133 12 HOH HOH . E 3 HOH A 7 134 13 HOH HOH . E 3 HOH A 8 135 14 HOH HOH . E 3 HOH A 9 136 16 HOH HOH . E 3 HOH A 10 137 17 HOH HOH . E 3 HOH A 11 138 19 HOH HOH . E 3 HOH A 12 139 20 HOH HOH . E 3 HOH A 13 504 504 HOH HOH . E 3 HOH A 14 505 505 HOH HOH . E 3 HOH A 15 506 506 HOH HOH . E 3 HOH A 16 508 508 HOH HOH . E 3 HOH A 17 510 510 HOH HOH . E 3 HOH A 18 511 511 HOH HOH . E 3 HOH A 19 512 512 HOH HOH . E 3 HOH A 20 514 514 HOH HOH . E 3 HOH A 21 515 515 HOH HOH . E 3 HOH A 22 516 516 HOH HOH . E 3 HOH A 23 519 519 HOH HOH . E 3 HOH A 24 520 520 HOH HOH . E 3 HOH A 25 522 522 HOH HOH . E 3 HOH A 26 523 523 HOH HOH . E 3 HOH A 27 526 526 HOH HOH . E 3 HOH A 28 528 528 HOH HOH . E 3 HOH A 29 529 529 HOH HOH . E 3 HOH A 30 531 531 HOH HOH . E 3 HOH A 31 532 532 HOH HOH . E 3 HOH A 32 533 533 HOH HOH . E 3 HOH A 33 534 534 HOH HOH . E 3 HOH A 34 538 538 HOH HOH . E 3 HOH A 35 539 539 HOH HOH . E 3 HOH A 36 542 542 HOH HOH . E 3 HOH A 37 544 544 HOH HOH . E 3 HOH A 38 546 546 HOH HOH . E 3 HOH A 39 549 549 HOH HOH . E 3 HOH A 40 550 550 HOH HOH . E 3 HOH A 41 552 552 HOH HOH . E 3 HOH A 42 554 554 HOH HOH . E 3 HOH A 43 555 555 HOH HOH . E 3 HOH A 44 556 556 HOH HOH . E 3 HOH A 45 559 559 HOH HOH . E 3 HOH A 46 563 563 HOH HOH . E 3 HOH A 47 566 566 HOH HOH . E 3 HOH A 48 569 569 HOH HOH . E 3 HOH A 49 572 572 HOH HOH . E 3 HOH A 50 575 575 HOH HOH . E 3 HOH A 51 576 576 HOH HOH . E 3 HOH A 52 577 577 HOH HOH . E 3 HOH A 53 578 578 HOH HOH . E 3 HOH A 54 579 579 HOH HOH . E 3 HOH A 55 583 583 HOH HOH . E 3 HOH A 56 587 587 HOH HOH . E 3 HOH A 57 593 593 HOH HOH . E 3 HOH A 58 595 595 HOH HOH . E 3 HOH A 59 597 597 HOH HOH . E 3 HOH A 60 603 603 HOH HOH . E 3 HOH A 61 607 607 HOH HOH . E 3 HOH A 62 609 609 HOH HOH . E 3 HOH A 63 610 610 HOH HOH . E 3 HOH A 64 612 612 HOH HOH . E 3 HOH A 65 613 613 HOH HOH . E 3 HOH A 66 616 616 HOH HOH . E 3 HOH A 67 617 617 HOH HOH . E 3 HOH A 68 620 620 HOH HOH . E 3 HOH A 69 621 621 HOH HOH . E 3 HOH A 70 622 622 HOH HOH . E 3 HOH A 71 628 628 HOH HOH . E 3 HOH A 72 631 631 HOH HOH . E 3 HOH A 73 632 632 HOH HOH . E 3 HOH A 74 633 633 HOH HOH . E 3 HOH A 75 634 634 HOH HOH . E 3 HOH A 76 635 635 HOH HOH . E 3 HOH A 77 638 638 HOH HOH . E 3 HOH A 78 640 640 HOH HOH . E 3 HOH A 79 643 643 HOH HOH . E 3 HOH A 80 644 644 HOH HOH . E 3 HOH A 81 649 649 HOH HOH . E 3 HOH A 82 650 650 HOH HOH . E 3 HOH A 83 652 652 HOH HOH . E 3 HOH A 84 654 654 HOH HOH . E 3 HOH A 85 657 657 HOH HOH . E 3 HOH A 86 658 658 HOH HOH . E 3 HOH A 87 659 659 HOH HOH . E 3 HOH A 88 661 661 HOH HOH . E 3 HOH A 89 663 663 HOH HOH . E 3 HOH A 90 667 667 HOH HOH . E 3 HOH A 91 668 668 HOH HOH . E 3 HOH A 92 669 669 HOH HOH . E 3 HOH A 93 672 672 HOH HOH . E 3 HOH A 94 673 673 HOH HOH . E 3 HOH A 95 685 685 HOH HOH . E 3 HOH A 96 686 686 HOH HOH . E 3 HOH A 97 690 690 HOH HOH . E 3 HOH A 98 692 692 HOH HOH . E 3 HOH A 99 694 694 HOH HOH . E 3 HOH A 100 701 701 HOH HOH . F 3 HOH B 1 128 2 HOH HOH . F 3 HOH B 2 129 8 HOH HOH . F 3 HOH B 3 130 18 HOH HOH . F 3 HOH B 4 131 22 HOH HOH . F 3 HOH B 5 132 24 HOH HOH . F 3 HOH B 6 502 502 HOH HOH . F 3 HOH B 7 503 503 HOH HOH . F 3 HOH B 8 507 507 HOH HOH . F 3 HOH B 9 509 509 HOH HOH . F 3 HOH B 10 513 513 HOH HOH . F 3 HOH B 11 517 517 HOH HOH . F 3 HOH B 12 518 518 HOH HOH . F 3 HOH B 13 521 521 HOH HOH . F 3 HOH B 14 524 524 HOH HOH . F 3 HOH B 15 525 525 HOH HOH . F 3 HOH B 16 527 527 HOH HOH . F 3 HOH B 17 535 535 HOH HOH . F 3 HOH B 18 540 540 HOH HOH . F 3 HOH B 19 541 541 HOH HOH . F 3 HOH B 20 545 545 HOH HOH . F 3 HOH B 21 547 547 HOH HOH . F 3 HOH B 22 548 548 HOH HOH . F 3 HOH B 23 551 551 HOH HOH . F 3 HOH B 24 557 557 HOH HOH . F 3 HOH B 25 558 558 HOH HOH . F 3 HOH B 26 561 561 HOH HOH . F 3 HOH B 27 564 564 HOH HOH . F 3 HOH B 28 565 565 HOH HOH . F 3 HOH B 29 567 567 HOH HOH . F 3 HOH B 30 568 568 HOH HOH . F 3 HOH B 31 570 570 HOH HOH . F 3 HOH B 32 571 571 HOH HOH . F 3 HOH B 33 574 574 HOH HOH . F 3 HOH B 34 580 580 HOH HOH . F 3 HOH B 35 584 584 HOH HOH . F 3 HOH B 36 585 585 HOH HOH . F 3 HOH B 37 588 588 HOH HOH . F 3 HOH B 38 589 589 HOH HOH . F 3 HOH B 39 590 590 HOH HOH . F 3 HOH B 40 591 591 HOH HOH . F 3 HOH B 41 592 592 HOH HOH . F 3 HOH B 42 594 594 HOH HOH . F 3 HOH B 43 596 596 HOH HOH . F 3 HOH B 44 598 598 HOH HOH . F 3 HOH B 45 599 599 HOH HOH . F 3 HOH B 46 600 600 HOH HOH . F 3 HOH B 47 601 601 HOH HOH . F 3 HOH B 48 602 602 HOH HOH . F 3 HOH B 49 606 606 HOH HOH . F 3 HOH B 50 608 608 HOH HOH . F 3 HOH B 51 614 614 HOH HOH . F 3 HOH B 52 615 615 HOH HOH . F 3 HOH B 53 623 623 HOH HOH . F 3 HOH B 54 624 624 HOH HOH . F 3 HOH B 55 625 625 HOH HOH . F 3 HOH B 56 626 626 HOH HOH . F 3 HOH B 57 627 627 HOH HOH . F 3 HOH B 58 629 629 HOH HOH . F 3 HOH B 59 637 637 HOH HOH . F 3 HOH B 60 639 639 HOH HOH . F 3 HOH B 61 641 641 HOH HOH . F 3 HOH B 62 642 642 HOH HOH . F 3 HOH B 63 645 645 HOH HOH . F 3 HOH B 64 646 646 HOH HOH . F 3 HOH B 65 647 647 HOH HOH . F 3 HOH B 66 648 648 HOH HOH . F 3 HOH B 67 651 651 HOH HOH . F 3 HOH B 68 653 653 HOH HOH . F 3 HOH B 69 655 655 HOH HOH . F 3 HOH B 70 656 656 HOH HOH . F 3 HOH B 71 664 664 HOH HOH . F 3 HOH B 72 665 665 HOH HOH . F 3 HOH B 73 666 666 HOH HOH . F 3 HOH B 74 670 670 HOH HOH . F 3 HOH B 75 675 675 HOH HOH . F 3 HOH B 76 680 680 HOH HOH . F 3 HOH B 77 684 684 HOH HOH . F 3 HOH B 78 687 687 HOH HOH . F 3 HOH B 79 689 689 HOH HOH . F 3 HOH B 80 691 691 HOH HOH . F 3 HOH B 81 693 693 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7BD . . . D 2 20.611 43.661 27.713 0.5 42.72 ? C1 7BD 500 B 1 HETATM 2 C C2 7BD . . . D 2 21.588 42.705 26.781 0.5 42.18 ? C2 7BD 500 B 1 HETATM 3 C C3 7BD . . . D 2 22.38 42.014 27.727 0.5 42.49 ? C3 7BD 500 B 1 HETATM 4 C C4 7BD . . . D 2 22.103 42.389 29.068 0.5 42.81 ? C4 7BD 500 B 1 HETATM 5 C C5 7BD . . . D 2 21.058 43.363 29.06 0.5 42.75 ? C5 7BD 500 B 1 HETATM 6 C C6 7BD . . . D 2 22.899 41.794 30.14 0.5 42.69 ? C6 7BD 500 B 1 HETATM 7 C C10 7BD . . . D 2 20.45 44.072 30.121 0.5 42.97 ? C10 7BD 500 B 1 HETATM 8 C C11 7BD . . . D 2 19.576 44.681 27.454 0.5 42.63 ? C11 7BD 500 B 1 HETATM 9 C C12 7BD . . . D 2 18.994 45.357 28.518 0.5 42.66 ? C12 7BD 500 B 1 HETATM 10 C C13 7BD . . . D 2 19.423 45.057 29.828 0.5 42.84 ? C13 7BD 500 B 1 HETATM 11 C C16 7BD . . . D 2 21.646 42.93 23.199 0.5 38.33 ? C16 7BD 500 B 1 HETATM 12 C C17 7BD . . . D 2 20.646 43.921 22.667 0.5 36.42 ? C17 7BD 500 B 1 HETATM 13 C C18 7BD . . . D 2 21.129 44.554 21.441 0.5 35.65 ? C18 7BD 500 B 1 HETATM 14 C C7 7BD . . . D 2 23.5 41.043 27.53 0.5 42.7 ? C7 7BD 500 B 1 HETATM 15 C C8 7BD . . . D 2 24.222 40.502 28.559 0.5 42.99 ? C8 7BD 500 B 1 HETATM 16 C C9 7BD . . . D 2 23.943 40.856 29.864 0.5 42.61 ? C9 7BD 500 B 1 HETATM 17 N N14 7BD . . . D 2 21.708 42.336 25.356 0.5 42.32 ? N14 7BD 500 B 1 HETATM 18 O O15 7BD . . . D 2 21.818 43.232 24.553 0.5 40.77 ? O15 7BD 500 B 1 HETATM 19 O O19 7BD . . . D 2 21.052 45.78 21.235 0.5 33.02 ? O19 7BD 500 B 1 HETATM 20 O O20 7BD . . . D 2 21.649 43.636 20.753 0.5 34.02 ? O20 7BD 500 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #