data_3GS6 # _model_server_result.job_id SiFjlzvKc4O3yC0D7LkSyQ _model_server_result.datetime_utc '2024-11-05 00:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":341}' # _entry.id 3GS6 # _exptl.entry_id 3GS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-2-YLIDENE]AMINO] N-PHENYLCARBAMATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GS6 _cell.length_a 47.778 _cell.length_b 86.021 _cell.length_c 86.217 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H23 N3 O7' _chem_comp.formula_weight 381.38 _chem_comp.id NP6 _chem_comp.mon_nstd_flag . _chem_comp.name '[[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-2-YLIDENE]AMINO] N-PHENYLCARBAMATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 NP6 sing 250 n n C1 C3 NP6 sing 251 n n C3 C4 NP6 sing 252 n n C4 O1 NP6 doub 253 n n C4 N1 NP6 sing 254 n n N1 C5 NP6 sing 255 n n C5 C6 NP6 sing 256 n n C5 C10 NP6 sing 257 n n C6 O2 NP6 sing 258 n n C6 C7 NP6 sing 259 n n C7 O3 NP6 sing 260 n n C7 C8 NP6 sing 261 n n C8 C9 NP6 sing 262 n n C8 O5 NP6 sing 263 n n C9 O4 NP6 sing 264 n n O5 C10 NP6 sing 265 n n C10 N2 NP6 doub 266 n n N2 O6 NP6 sing 267 n n O6 C11 NP6 sing 268 n n C11 O7 NP6 doub 269 n n C11 N3 NP6 sing 270 n n N3 C12 NP6 sing 271 n n C12 C13 NP6 sing 272 n y C12 C17 NP6 doub 273 n y C13 C14 NP6 doub 274 n y C14 C15 NP6 sing 275 n y C15 C16 NP6 doub 276 n y C16 C17 NP6 sing 277 n y C2 H21C NP6 sing 278 n n C2 H22C NP6 sing 279 n n C2 H23C NP6 sing 280 n n C1 H11C NP6 sing 281 n n C1 H12C NP6 sing 282 n n C3 H31C NP6 sing 283 z n C3 H32C NP6 sing 284 n n N1 H1 NP6 sing 285 n n C5 H5 NP6 sing 286 n n C6 H6 NP6 sing 287 n n O2 H2 NP6 sing 288 n n C7 H7 NP6 sing 289 n n O3 H3 NP6 sing 290 n n C8 H8 NP6 sing 291 n n C9 H91C NP6 sing 292 n n C9 H92C NP6 sing 293 n n O4 H4 NP6 sing 294 n n N3 HA NP6 sing 295 n n C13 H13 NP6 sing 296 n n C17 H17 NP6 sing 297 n n C14 H14 NP6 sing 298 n n C15 H15 NP6 sing 299 n n C16 H16 NP6 sing 300 n n # _atom_sites.entry_id 3GS6 _atom_sites.fract_transf_matrix[1][1] 0.02093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NP6 A 1 341 341 NP6 NP6 . C 3 GOL A 1 342 342 GOL GOL . D 3 GOL A 1 343 343 GOL GOL . E 4 HOH A 1 344 344 HOH HOH . E 4 HOH A 2 345 345 HOH HOH . E 4 HOH A 3 346 346 HOH HOH . E 4 HOH A 4 347 347 HOH HOH . E 4 HOH A 5 348 348 HOH HOH . E 4 HOH A 6 349 349 HOH HOH . E 4 HOH A 7 350 350 HOH HOH . E 4 HOH A 8 351 351 HOH HOH . E 4 HOH A 9 352 352 HOH HOH . E 4 HOH A 10 353 353 HOH HOH . E 4 HOH A 11 354 354 HOH HOH . E 4 HOH A 12 355 355 HOH HOH . E 4 HOH A 13 356 356 HOH HOH . E 4 HOH A 14 357 357 HOH HOH . E 4 HOH A 15 358 358 HOH HOH . E 4 HOH A 16 359 359 HOH HOH . E 4 HOH A 17 360 360 HOH HOH . E 4 HOH A 18 361 361 HOH HOH . E 4 HOH A 19 362 362 HOH HOH . E 4 HOH A 20 363 363 HOH HOH . E 4 HOH A 21 364 364 HOH HOH . E 4 HOH A 22 365 365 HOH HOH . E 4 HOH A 23 366 366 HOH HOH . E 4 HOH A 24 367 367 HOH HOH . E 4 HOH A 25 368 368 HOH HOH . E 4 HOH A 26 369 369 HOH HOH . E 4 HOH A 27 370 370 HOH HOH . E 4 HOH A 28 371 371 HOH HOH . E 4 HOH A 29 372 372 HOH HOH . E 4 HOH A 30 373 373 HOH HOH . E 4 HOH A 31 374 374 HOH HOH . E 4 HOH A 32 375 375 HOH HOH . E 4 HOH A 33 376 376 HOH HOH . E 4 HOH A 34 377 377 HOH HOH . E 4 HOH A 35 378 378 HOH HOH . E 4 HOH A 36 379 379 HOH HOH . E 4 HOH A 37 380 380 HOH HOH . E 4 HOH A 38 381 381 HOH HOH . E 4 HOH A 39 382 382 HOH HOH . E 4 HOH A 40 383 383 HOH HOH . E 4 HOH A 41 384 384 HOH HOH . E 4 HOH A 42 385 385 HOH HOH . E 4 HOH A 43 386 386 HOH HOH . E 4 HOH A 44 387 387 HOH HOH . E 4 HOH A 45 388 388 HOH HOH . E 4 HOH A 46 389 389 HOH HOH . E 4 HOH A 47 390 390 HOH HOH . E 4 HOH A 48 391 391 HOH HOH . E 4 HOH A 49 392 392 HOH HOH . E 4 HOH A 50 393 393 HOH HOH . E 4 HOH A 51 394 394 HOH HOH . E 4 HOH A 52 395 395 HOH HOH . E 4 HOH A 53 396 396 HOH HOH . E 4 HOH A 54 397 397 HOH HOH . E 4 HOH A 55 398 398 HOH HOH . E 4 HOH A 56 399 399 HOH HOH . E 4 HOH A 57 400 400 HOH HOH . E 4 HOH A 58 401 401 HOH HOH . E 4 HOH A 59 402 402 HOH HOH . E 4 HOH A 60 403 403 HOH HOH . E 4 HOH A 61 404 404 HOH HOH . E 4 HOH A 62 405 405 HOH HOH . E 4 HOH A 63 406 406 HOH HOH . E 4 HOH A 64 407 407 HOH HOH . E 4 HOH A 65 408 408 HOH HOH . E 4 HOH A 66 409 409 HOH HOH . E 4 HOH A 67 410 410 HOH HOH . E 4 HOH A 68 411 411 HOH HOH . E 4 HOH A 69 412 412 HOH HOH . E 4 HOH A 70 413 413 HOH HOH . E 4 HOH A 71 414 414 HOH HOH . E 4 HOH A 72 415 415 HOH HOH . E 4 HOH A 73 416 416 HOH HOH . E 4 HOH A 74 417 417 HOH HOH . E 4 HOH A 75 418 418 HOH HOH . E 4 HOH A 76 419 419 HOH HOH . E 4 HOH A 77 420 420 HOH HOH . E 4 HOH A 78 421 421 HOH HOH . E 4 HOH A 79 422 422 HOH HOH . E 4 HOH A 80 423 423 HOH HOH . E 4 HOH A 81 424 424 HOH HOH . E 4 HOH A 82 425 425 HOH HOH . E 4 HOH A 83 426 426 HOH HOH . E 4 HOH A 84 427 427 HOH HOH . E 4 HOH A 85 428 428 HOH HOH . E 4 HOH A 86 429 429 HOH HOH . E 4 HOH A 87 430 430 HOH HOH . E 4 HOH A 88 431 431 HOH HOH . E 4 HOH A 89 432 432 HOH HOH . E 4 HOH A 90 433 433 HOH HOH . E 4 HOH A 91 434 434 HOH HOH . E 4 HOH A 92 435 435 HOH HOH . E 4 HOH A 93 436 436 HOH HOH . E 4 HOH A 94 437 437 HOH HOH . E 4 HOH A 95 438 438 HOH HOH . E 4 HOH A 96 439 430 HOH HOH . E 4 HOH A 97 440 440 HOH HOH . E 4 HOH A 98 441 441 HOH HOH . E 4 HOH A 99 442 442 HOH HOH . E 4 HOH A 100 443 443 HOH HOH . E 4 HOH A 101 444 444 HOH HOH . E 4 HOH A 102 445 445 HOH HOH . E 4 HOH A 103 446 446 HOH HOH . E 4 HOH A 104 447 447 HOH HOH . E 4 HOH A 105 448 448 HOH HOH . E 4 HOH A 106 449 449 HOH HOH . E 4 HOH A 107 450 450 HOH HOH . E 4 HOH A 108 451 451 HOH HOH . E 4 HOH A 109 452 452 HOH HOH . E 4 HOH A 110 453 453 HOH HOH . E 4 HOH A 111 454 454 HOH HOH . E 4 HOH A 112 455 455 HOH HOH . E 4 HOH A 113 456 456 HOH HOH . E 4 HOH A 114 457 457 HOH HOH . E 4 HOH A 115 458 458 HOH HOH . E 4 HOH A 116 459 450 HOH HOH . E 4 HOH A 117 460 460 HOH HOH . E 4 HOH A 118 461 461 HOH HOH . E 4 HOH A 119 462 462 HOH HOH . E 4 HOH A 120 463 463 HOH HOH . E 4 HOH A 121 464 464 HOH HOH . E 4 HOH A 122 465 465 HOH HOH . E 4 HOH A 123 466 466 HOH HOH . E 4 HOH A 124 467 467 HOH HOH . E 4 HOH A 125 468 468 HOH HOH . E 4 HOH A 126 469 469 HOH HOH . E 4 HOH A 127 470 470 HOH HOH . E 4 HOH A 128 471 471 HOH HOH . E 4 HOH A 129 472 472 HOH HOH . E 4 HOH A 130 473 473 HOH HOH . E 4 HOH A 131 474 474 HOH HOH . E 4 HOH A 132 475 475 HOH HOH . E 4 HOH A 133 476 476 HOH HOH . E 4 HOH A 134 477 477 HOH HOH . E 4 HOH A 135 478 478 HOH HOH . E 4 HOH A 136 479 479 HOH HOH . E 4 HOH A 137 480 480 HOH HOH . E 4 HOH A 138 481 481 HOH HOH . E 4 HOH A 139 482 482 HOH HOH . E 4 HOH A 140 483 483 HOH HOH . E 4 HOH A 141 484 484 HOH HOH . E 4 HOH A 142 485 485 HOH HOH . E 4 HOH A 143 486 486 HOH HOH . E 4 HOH A 144 487 487 HOH HOH . E 4 HOH A 145 488 488 HOH HOH . E 4 HOH A 146 489 489 HOH HOH . E 4 HOH A 147 490 490 HOH HOH . E 4 HOH A 148 491 491 HOH HOH . E 4 HOH A 149 492 492 HOH HOH . E 4 HOH A 150 493 493 HOH HOH . E 4 HOH A 151 494 494 HOH HOH . E 4 HOH A 152 495 495 HOH HOH . E 4 HOH A 153 496 496 HOH HOH . E 4 HOH A 154 497 497 HOH HOH . E 4 HOH A 155 498 498 HOH HOH . E 4 HOH A 156 499 400 HOH HOH . E 4 HOH A 157 500 500 HOH HOH . E 4 HOH A 158 501 501 HOH HOH . E 4 HOH A 159 502 502 HOH HOH . E 4 HOH A 160 503 503 HOH HOH . E 4 HOH A 161 504 504 HOH HOH . E 4 HOH A 162 505 505 HOH HOH . E 4 HOH A 163 506 506 HOH HOH . E 4 HOH A 164 507 507 HOH HOH . E 4 HOH A 165 508 508 HOH HOH . E 4 HOH A 166 509 509 HOH HOH . E 4 HOH A 167 510 510 HOH HOH . E 4 HOH A 168 511 511 HOH HOH . E 4 HOH A 169 512 512 HOH HOH . E 4 HOH A 170 513 513 HOH HOH . E 4 HOH A 171 514 514 HOH HOH . E 4 HOH A 172 515 515 HOH HOH . E 4 HOH A 173 516 516 HOH HOH . E 4 HOH A 174 517 517 HOH HOH . E 4 HOH A 175 518 518 HOH HOH . E 4 HOH A 176 519 519 HOH HOH . E 4 HOH A 177 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 NP6 . . . B 2 -19.501 -7.678 3.44 1 27 ? C2 NP6 341 A 1 HETATM 2 C C1 NP6 . . . B 2 -19.426 -6.759 4.655 1 27.34 ? C1 NP6 341 A 1 HETATM 3 C C3 NP6 . . . B 2 -17.979 -6.6 5.11 1 26.01 ? C3 NP6 341 A 1 HETATM 4 C C4 NP6 . . . B 2 -17.506 -7.937 5.647 1 26.11 ? C4 NP6 341 A 1 HETATM 5 O O1 NP6 . . . B 2 -18.241 -8.612 6.35 1 24.94 ? O1 NP6 341 A 1 HETATM 6 N N1 NP6 . . . B 2 -16.277 -8.327 5.31 1 26.16 ? N1 NP6 341 A 1 HETATM 7 C C5 NP6 . . . B 2 -15.734 -9.59 5.787 1 28.07 ? C5 NP6 341 A 1 HETATM 8 C C6 NP6 . . . B 2 -14.587 -9.267 6.761 1 27.37 ? C6 NP6 341 A 1 HETATM 9 O O2 NP6 . . . B 2 -15.111 -8.593 7.927 1 24.17 ? O2 NP6 341 A 1 HETATM 10 C C7 NP6 . . . B 2 -13.867 -10.579 7.12 1 27.04 ? C7 NP6 341 A 1 HETATM 11 O O3 NP6 . . . B 2 -12.926 -10.424 8.197 1 25.08 ? O3 NP6 341 A 1 HETATM 12 C C8 NP6 . . . B 2 -13.164 -11.153 5.883 1 27.22 ? C8 NP6 341 A 1 HETATM 13 C C9 NP6 . . . B 2 -12.523 -12.504 6.141 1 28.03 ? C9 NP6 341 A 1 HETATM 14 O O4 NP6 . . . B 2 -13.226 -13.5 6.311 1 28.32 ? O4 NP6 341 A 1 HETATM 15 O O5 NP6 . . . B 2 -14.055 -11.311 4.774 1 27.91 ? O5 NP6 341 A 1 HETATM 16 C C10 NP6 . . . B 2 -15.255 -10.488 4.672 1 29.84 ? C10 NP6 341 A 1 HETATM 17 N N2 NP6 . . . B 2 -16.006 -10.61 3.651 1 33.67 ? N2 NP6 341 A 1 HETATM 18 O O6 NP6 . . . B 2 -15.688 -11.395 2.711 1 36.19 ? O6 NP6 341 A 1 HETATM 19 C C11 NP6 . . . B 2 -16.437 -11.502 1.451 1 37.57 ? C11 NP6 341 A 1 HETATM 20 O O7 NP6 . . . B 2 -17.493 -10.888 1.323 1 36.93 ? O7 NP6 341 A 1 HETATM 21 N N3 NP6 . . . B 2 -15.913 -12.291 0.499 1 37.88 ? N3 NP6 341 A 1 HETATM 22 C C12 NP6 . . . B 2 -16.457 -12.511 -0.784 1 39.06 ? C12 NP6 341 A 1 HETATM 23 C C13 NP6 . . . B 2 -15.877 -13.488 -1.608 1 38.87 ? C13 NP6 341 A 1 HETATM 24 C C14 NP6 . . . B 2 -16.376 -13.728 -2.89 1 38.52 ? C14 NP6 341 A 1 HETATM 25 C C15 NP6 . . . B 2 -17.454 -12.978 -3.361 1 38.68 ? C15 NP6 341 A 1 HETATM 26 C C16 NP6 . . . B 2 -18.028 -11.994 -2.544 1 39.16 ? C16 NP6 341 A 1 HETATM 27 C C17 NP6 . . . B 2 -17.533 -11.754 -1.26 1 38.35 ? C17 NP6 341 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #