data_3GS7 # _model_server_result.job_id TUbmqoF13-wE1-1RKn6gkA _model_server_result.datetime_utc '2024-11-22 09:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gs7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":128}' # _entry.id 3GS7 # _exptl.entry_id 3GS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-({[(1Z)-(2-methoxyphenyl)methylidene]amino}oxy)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GS7 _cell.length_a 42.169 _cell.length_b 84.757 _cell.length_c 63.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 42.169 84.757 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H13 N O4' _chem_comp.formula_weight 223.225 _chem_comp.id 8BD _chem_comp.mon_nstd_flag . _chem_comp.name '3-({[(1Z)-(2-methoxyphenyl)methylidene]amino}oxy)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(E)-3-(2-methoxybenzylideneaminooxy)propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CAA 8BD sing 1 n n CAA HAA 8BD sing 2 n n CAA HAAA 8BD sing 3 n n CAA HAAB 8BD sing 4 n n OAL CAP 8BD sing 5 n n CAH CAP 8BD doub 6 n y CAP CAO 8BD sing 7 n y CAH CAF 8BD sing 8 n y CAH HAH 8BD sing 9 n n CAF CAE 8BD doub 10 n y CAF HAF 8BD sing 11 n n CAE CAG 8BD sing 12 n y CAE HAE 8BD sing 13 n n CAO CAG 8BD doub 14 n y CAG HAG 8BD sing 15 n n CAO CAD 8BD sing 16 n n CAD NAK 8BD doub 17 z n CAD HAD 8BD sing 18 n n NAK OAM 8BD sing 19 n n OAM CAI 8BD sing 20 n n CAI CAJ 8BD sing 21 n n CAI HAI 8BD sing 22 n n CAI HAIA 8BD sing 23 n n CAJ CAN 8BD sing 24 n n CAJ HAJ 8BD sing 25 n n CAJ HAJA 8BD sing 26 n n CAN OAB 8BD doub 27 n n CAN OAC 8BD sing 28 n n OAC HOAC 8BD sing 29 n n # _atom_sites.entry_id 3GS7 _atom_sites.fract_transf_matrix[1][1] 0.023714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8BD A 1 128 2 8BD NEW . D 2 8BD B 1 128 1 8BD NEW . E 3 HOH A 1 129 2 HOH HOH . E 3 HOH A 2 130 3 HOH HOH . E 3 HOH A 3 131 131 HOH HOH . E 3 HOH A 4 132 132 HOH HOH . E 3 HOH A 5 133 4 HOH HOH . E 3 HOH A 6 134 5 HOH HOH . E 3 HOH A 7 135 6 HOH HOH . E 3 HOH A 8 136 136 HOH HOH . E 3 HOH A 9 137 137 HOH HOH . E 3 HOH A 10 138 7 HOH HOH . E 3 HOH A 11 139 10 HOH HOH . E 3 HOH A 12 140 11 HOH HOH . E 3 HOH A 13 141 14 HOH HOH . E 3 HOH A 14 142 142 HOH HOH . E 3 HOH A 15 143 15 HOH HOH . E 3 HOH A 16 144 17 HOH HOH . E 3 HOH A 17 145 145 HOH HOH . E 3 HOH A 18 146 18 HOH HOH . E 3 HOH A 19 147 147 HOH HOH . E 3 HOH A 20 148 19 HOH HOH . E 3 HOH A 21 149 149 HOH HOH . E 3 HOH A 22 150 150 HOH HOH . E 3 HOH A 23 151 151 HOH HOH . E 3 HOH A 24 152 20 HOH HOH . E 3 HOH A 25 153 21 HOH HOH . E 3 HOH A 26 154 154 HOH HOH . E 3 HOH A 27 155 22 HOH HOH . E 3 HOH A 28 156 156 HOH HOH . E 3 HOH A 29 157 25 HOH HOH . E 3 HOH A 30 158 26 HOH HOH . E 3 HOH A 31 159 27 HOH HOH . E 3 HOH A 32 160 28 HOH HOH . E 3 HOH A 33 161 33 HOH HOH . E 3 HOH A 34 162 34 HOH HOH . E 3 HOH A 35 163 37 HOH HOH . E 3 HOH A 36 164 38 HOH HOH . E 3 HOH A 37 165 39 HOH HOH . E 3 HOH A 38 166 41 HOH HOH . E 3 HOH A 39 167 44 HOH HOH . E 3 HOH A 40 168 45 HOH HOH . E 3 HOH A 41 169 47 HOH HOH . E 3 HOH A 42 170 48 HOH HOH . E 3 HOH A 43 171 49 HOH HOH . E 3 HOH A 44 172 50 HOH HOH . E 3 HOH A 45 173 51 HOH HOH . E 3 HOH A 46 174 52 HOH HOH . E 3 HOH A 47 175 53 HOH HOH . E 3 HOH A 48 176 57 HOH HOH . E 3 HOH A 49 177 58 HOH HOH . E 3 HOH A 50 178 59 HOH HOH . E 3 HOH A 51 179 61 HOH HOH . E 3 HOH A 52 180 62 HOH HOH . E 3 HOH A 53 181 63 HOH HOH . E 3 HOH A 54 182 64 HOH HOH . E 3 HOH A 55 183 69 HOH HOH . E 3 HOH A 56 184 71 HOH HOH . E 3 HOH A 57 185 73 HOH HOH . E 3 HOH A 58 186 74 HOH HOH . E 3 HOH A 59 187 77 HOH HOH . E 3 HOH A 60 188 79 HOH HOH . E 3 HOH A 61 189 80 HOH HOH . E 3 HOH A 62 190 81 HOH HOH . E 3 HOH A 63 191 82 HOH HOH . E 3 HOH A 64 192 84 HOH HOH . E 3 HOH A 65 193 85 HOH HOH . E 3 HOH A 66 194 86 HOH HOH . E 3 HOH A 67 195 87 HOH HOH . E 3 HOH A 68 196 88 HOH HOH . E 3 HOH A 69 197 90 HOH HOH . E 3 HOH A 70 198 92 HOH HOH . E 3 HOH A 71 199 93 HOH HOH . E 3 HOH A 72 200 97 HOH HOH . E 3 HOH A 73 201 100 HOH HOH . E 3 HOH A 74 202 101 HOH HOH . E 3 HOH A 75 203 102 HOH HOH . E 3 HOH A 76 204 103 HOH HOH . E 3 HOH A 77 205 104 HOH HOH . E 3 HOH A 78 206 109 HOH HOH . E 3 HOH A 79 207 111 HOH HOH . E 3 HOH A 80 208 112 HOH HOH . E 3 HOH A 81 209 121 HOH HOH . E 3 HOH A 82 210 123 HOH HOH . E 3 HOH A 83 211 125 HOH HOH . E 3 HOH A 84 212 127 HOH HOH . E 3 HOH A 85 213 128 HOH HOH . E 3 HOH A 86 214 120 HOH HOH . F 3 HOH B 1 129 1 HOH HOH . F 3 HOH B 2 130 130 HOH HOH . F 3 HOH B 3 131 8 HOH HOH . F 3 HOH B 4 132 9 HOH HOH . F 3 HOH B 5 133 12 HOH HOH . F 3 HOH B 6 134 13 HOH HOH . F 3 HOH B 7 135 135 HOH HOH . F 3 HOH B 8 136 16 HOH HOH . F 3 HOH B 9 137 23 HOH HOH . F 3 HOH B 10 138 24 HOH HOH . F 3 HOH B 11 139 139 HOH HOH . F 3 HOH B 12 140 140 HOH HOH . F 3 HOH B 13 141 141 HOH HOH . F 3 HOH B 14 142 29 HOH HOH . F 3 HOH B 15 143 143 HOH HOH . F 3 HOH B 16 144 144 HOH HOH . F 3 HOH B 17 145 30 HOH HOH . F 3 HOH B 18 146 146 HOH HOH . F 3 HOH B 19 147 31 HOH HOH . F 3 HOH B 20 148 32 HOH HOH . F 3 HOH B 21 149 35 HOH HOH . F 3 HOH B 22 150 36 HOH HOH . F 3 HOH B 23 151 40 HOH HOH . F 3 HOH B 24 152 152 HOH HOH . F 3 HOH B 25 153 153 HOH HOH . F 3 HOH B 26 154 42 HOH HOH . F 3 HOH B 27 155 155 HOH HOH . F 3 HOH B 28 156 43 HOH HOH . F 3 HOH B 29 157 46 HOH HOH . F 3 HOH B 30 158 54 HOH HOH . F 3 HOH B 31 159 55 HOH HOH . F 3 HOH B 32 160 56 HOH HOH . F 3 HOH B 33 161 65 HOH HOH . F 3 HOH B 34 162 67 HOH HOH . F 3 HOH B 35 163 70 HOH HOH . F 3 HOH B 36 164 72 HOH HOH . F 3 HOH B 37 165 75 HOH HOH . F 3 HOH B 38 166 76 HOH HOH . F 3 HOH B 39 167 78 HOH HOH . F 3 HOH B 40 168 83 HOH HOH . F 3 HOH B 41 169 89 HOH HOH . F 3 HOH B 42 170 91 HOH HOH . F 3 HOH B 43 171 94 HOH HOH . F 3 HOH B 44 172 95 HOH HOH . F 3 HOH B 45 173 98 HOH HOH . F 3 HOH B 46 174 99 HOH HOH . F 3 HOH B 47 175 106 HOH HOH . F 3 HOH B 48 176 107 HOH HOH . F 3 HOH B 49 177 108 HOH HOH . F 3 HOH B 50 178 110 HOH HOH . F 3 HOH B 51 179 113 HOH HOH . F 3 HOH B 52 180 114 HOH HOH . F 3 HOH B 53 181 116 HOH HOH . F 3 HOH B 54 182 119 HOH HOH . F 3 HOH B 55 184 122 HOH HOH . F 3 HOH B 56 185 124 HOH HOH . F 3 HOH B 57 186 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 8BD . . . D 2 21.159 39.867 22.361 0.5 46.89 ? CAA 8BD 128 B 1 HETATM 2 O OAL 8BD . . . D 2 21.085 40.747 21.246 0.5 45.24 ? OAL 8BD 128 B 1 HETATM 3 C CAP 8BD . . . D 2 21.104 42.115 21.448 0.5 45.28 ? CAP 8BD 128 B 1 HETATM 4 C CAH 8BD . . . D 2 21.164 43.065 20.373 0.5 43.59 ? CAH 8BD 128 B 1 HETATM 5 C CAF 8BD . . . D 2 21.139 44.441 20.619 0.5 41.55 ? CAF 8BD 128 B 1 HETATM 6 C CAE 8BD . . . D 2 21.05 44.881 21.923 0.5 37.47 ? CAE 8BD 128 B 1 HETATM 7 C CAG 8BD . . . D 2 20.986 43.948 22.991 0.5 38.25 ? CAG 8BD 128 B 1 HETATM 8 C CAO 8BD . . . D 2 21.015 42.558 22.762 0.5 37.71 ? CAO 8BD 128 B 1 HETATM 9 C CAD 8BD . . . D 2 20.947 41.596 23.81 0.5 35.86 ? CAD 8BD 128 B 1 HETATM 10 N NAK 8BD . . . D 2 20.779 41.726 25.101 0.5 35.96 ? NAK 8BD 128 B 1 HETATM 11 O OAM 8BD . . . D 2 20.616 42.897 25.731 0.5 36.85 ? OAM 8BD 128 B 1 HETATM 12 C CAI 8BD . . . D 2 20.408 42.595 27.105 0.5 33 ? CAI 8BD 128 B 1 HETATM 13 C CAJ 8BD . . . D 2 21.763 42.474 27.772 0.5 37.8 ? CAJ 8BD 128 B 1 HETATM 14 C CAN 8BD . . . D 2 21.598 42.126 29.229 0.5 36.75 ? CAN 8BD 128 B 1 HETATM 15 O OAC 8BD . . . D 2 22.573 41.604 29.867 0.5 37.21 ? OAC 8BD 128 B 1 HETATM 16 O OAB 8BD . . . D 2 20.495 42.395 29.7 0.5 37.1 ? OAB 8BD 128 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #