data_3GSM
#
_model_server_result.job_id            by1bnZ_oWFXTgGAGwVzZfw 
_model_server_result.datetime_utc      '2024-12-27 03:03:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gsm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":344}' 
#
_entry.id    3GSM 
#
_exptl.entry_id    3GSM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GSM 
_cell.length_a            47.98 
_cell.length_b            86.44 
_cell.length_c            86.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GSM 
_atom_sites.fract_transf_matrix[1][1]    0.020842 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VPU A 1 341 341 VPU VPU . 
C 3 GOL A 1 343 343 GOL GOL . 
D 3 GOL A 1 344 344 GOL GOL . 
E 4 HOH A 1 345 345 HOH HOH . 
E 4 HOH A 2 346 346 HOH HOH . 
E 4 HOH A 3 347 347 HOH HOH . 
E 4 HOH A 4 348 348 HOH HOH . 
E 4 HOH A 5 349 349 HOH HOH . 
E 4 HOH A 6 350 350 HOH HOH . 
E 4 HOH A 7 351 351 HOH HOH . 
E 4 HOH A 8 352 352 HOH HOH . 
E 4 HOH A 9 353 353 HOH HOH . 
E 4 HOH A 10 354 354 HOH HOH . 
E 4 HOH A 11 355 355 HOH HOH . 
E 4 HOH A 12 356 356 HOH HOH . 
E 4 HOH A 13 357 357 HOH HOH . 
E 4 HOH A 14 358 358 HOH HOH . 
E 4 HOH A 15 359 359 HOH HOH . 
E 4 HOH A 16 360 360 HOH HOH . 
E 4 HOH A 17 361 361 HOH HOH . 
E 4 HOH A 18 362 362 HOH HOH . 
E 4 HOH A 19 363 363 HOH HOH . 
E 4 HOH A 20 364 364 HOH HOH . 
E 4 HOH A 21 365 365 HOH HOH . 
E 4 HOH A 22 366 366 HOH HOH . 
E 4 HOH A 23 367 367 HOH HOH . 
E 4 HOH A 24 368 368 HOH HOH . 
E 4 HOH A 25 369 369 HOH HOH . 
E 4 HOH A 26 370 370 HOH HOH . 
E 4 HOH A 27 371 371 HOH HOH . 
E 4 HOH A 28 372 372 HOH HOH . 
E 4 HOH A 29 373 373 HOH HOH . 
E 4 HOH A 30 374 374 HOH HOH . 
E 4 HOH A 31 375 375 HOH HOH . 
E 4 HOH A 32 376 376 HOH HOH . 
E 4 HOH A 33 377 377 HOH HOH . 
E 4 HOH A 34 378 378 HOH HOH . 
E 4 HOH A 35 379 379 HOH HOH . 
E 4 HOH A 36 380 380 HOH HOH . 
E 4 HOH A 37 381 381 HOH HOH . 
E 4 HOH A 38 382 382 HOH HOH . 
E 4 HOH A 39 383 383 HOH HOH . 
E 4 HOH A 40 384 384 HOH HOH . 
E 4 HOH A 41 385 385 HOH HOH . 
E 4 HOH A 42 386 386 HOH HOH . 
E 4 HOH A 43 387 387 HOH HOH . 
E 4 HOH A 44 388 388 HOH HOH . 
E 4 HOH A 45 389 389 HOH HOH . 
E 4 HOH A 46 390 390 HOH HOH . 
E 4 HOH A 47 391 391 HOH HOH . 
E 4 HOH A 48 392 392 HOH HOH . 
E 4 HOH A 49 393 393 HOH HOH . 
E 4 HOH A 50 394 394 HOH HOH . 
E 4 HOH A 51 395 395 HOH HOH . 
E 4 HOH A 52 396 396 HOH HOH . 
E 4 HOH A 53 397 397 HOH HOH . 
E 4 HOH A 54 398 398 HOH HOH . 
E 4 HOH A 55 399 399 HOH HOH . 
E 4 HOH A 56 400 400 HOH HOH . 
E 4 HOH A 57 401 401 HOH HOH . 
E 4 HOH A 58 402 402 HOH HOH . 
E 4 HOH A 59 403 403 HOH HOH . 
E 4 HOH A 60 404 404 HOH HOH . 
E 4 HOH A 61 405 405 HOH HOH . 
E 4 HOH A 62 406 406 HOH HOH . 
E 4 HOH A 63 407 407 HOH HOH . 
E 4 HOH A 64 408 408 HOH HOH . 
E 4 HOH A 65 409 409 HOH HOH . 
E 4 HOH A 66 410 410 HOH HOH . 
E 4 HOH A 67 411 411 HOH HOH . 
E 4 HOH A 68 412 412 HOH HOH . 
E 4 HOH A 69 413 413 HOH HOH . 
E 4 HOH A 70 414 414 HOH HOH . 
E 4 HOH A 71 415 415 HOH HOH . 
E 4 HOH A 72 416 416 HOH HOH . 
E 4 HOH A 73 417 417 HOH HOH . 
E 4 HOH A 74 418 418 HOH HOH . 
E 4 HOH A 75 419 419 HOH HOH . 
E 4 HOH A 76 420 420 HOH HOH . 
E 4 HOH A 77 421 421 HOH HOH . 
E 4 HOH A 78 422 422 HOH HOH . 
E 4 HOH A 79 423 423 HOH HOH . 
E 4 HOH A 80 424 424 HOH HOH . 
E 4 HOH A 81 425 425 HOH HOH . 
E 4 HOH A 82 426 426 HOH HOH . 
E 4 HOH A 83 427 427 HOH HOH . 
E 4 HOH A 84 428 428 HOH HOH . 
E 4 HOH A 85 429 429 HOH HOH . 
E 4 HOH A 86 430 430 HOH HOH . 
E 4 HOH A 87 431 431 HOH HOH . 
E 4 HOH A 88 432 432 HOH HOH . 
E 4 HOH A 89 433 433 HOH HOH . 
E 4 HOH A 90 434 434 HOH HOH . 
E 4 HOH A 91 435 435 HOH HOH . 
E 4 HOH A 92 436 436 HOH HOH . 
E 4 HOH A 93 437 437 HOH HOH . 
E 4 HOH A 94 438 438 HOH HOH . 
E 4 HOH A 95 439 439 HOH HOH . 
E 4 HOH A 96 440 440 HOH HOH . 
E 4 HOH A 97 441 441 HOH HOH . 
E 4 HOH A 98 442 442 HOH HOH . 
E 4 HOH A 99 443 443 HOH HOH . 
E 4 HOH A 100 444 444 HOH HOH . 
E 4 HOH A 101 445 445 HOH HOH . 
E 4 HOH A 102 446 446 HOH HOH . 
E 4 HOH A 103 447 447 HOH HOH . 
E 4 HOH A 104 448 448 HOH HOH . 
E 4 HOH A 105 449 449 HOH HOH . 
E 4 HOH A 106 450 450 HOH HOH . 
E 4 HOH A 107 451 451 HOH HOH . 
E 4 HOH A 108 452 452 HOH HOH . 
E 4 HOH A 109 453 453 HOH HOH . 
E 4 HOH A 110 454 454 HOH HOH . 
E 4 HOH A 111 455 455 HOH HOH . 
E 4 HOH A 112 456 456 HOH HOH . 
E 4 HOH A 113 457 457 HOH HOH . 
E 4 HOH A 114 458 458 HOH HOH . 
E 4 HOH A 115 459 459 HOH HOH . 
E 4 HOH A 116 460 460 HOH HOH . 
E 4 HOH A 117 461 461 HOH HOH . 
E 4 HOH A 118 462 462 HOH HOH . 
E 4 HOH A 119 463 463 HOH HOH . 
E 4 HOH A 120 464 464 HOH HOH . 
E 4 HOH A 121 465 465 HOH HOH . 
E 4 HOH A 122 466 466 HOH HOH . 
E 4 HOH A 123 467 467 HOH HOH . 
E 4 HOH A 124 468 468 HOH HOH . 
E 4 HOH A 125 469 469 HOH HOH . 
E 4 HOH A 126 470 470 HOH HOH . 
E 4 HOH A 127 471 471 HOH HOH . 
E 4 HOH A 128 472 472 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -13.926 19.433 14.804 1 32.54 ? C1 GOL 344 A 1 
HETATM 2 O O1 GOL . . . D 3 -12.958 19.521 15.833 1 27.97 ? O1 GOL 344 A 1 
HETATM 3 C C2 GOL . . . D 3 -13.504 20.184 13.526 1 33.47 ? C2 GOL 344 A 1 
HETATM 4 O O2 GOL . . . D 3 -13.854 19.422 12.39 1 34.85 ? O2 GOL 344 A 1 
HETATM 5 C C3 GOL . . . D 3 -12 20.435 13.463 1 34.91 ? C3 GOL 344 A 1 
HETATM 6 O O3 GOL . . . D 3 -11.538 20.472 12.118 1 34.61 ? O3 GOL 344 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#