data_3GSP
#
_model_server_result.job_id            Gh4rubgltcAhHKBm9JxssQ 
_model_server_result.datetime_utc      '2024-11-28 14:25:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gsp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":106}' 
#
_entry.id    3GSP 
#
_exptl.entry_id    3GSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-3'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GSP 
_cell.length_a            48.28 
_cell.length_b            51.11 
_cell.length_c            40.55 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc3 B CA CA . A CA 107 1_555 E O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc4 B CA CA . A CA 107 1_555 E O HOH . A HOH 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc5 B CA CA . A CA 107 1_555 E O HOH . A HOH 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc6 B CA CA . A CA 107 1_555 E O HOH . A HOH 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc7 B CA CA . A CA 107 1_555 E O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                3GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-3'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 3GP doub 1 n n 
P O2P 3GP sing 2 n n 
P O3P 3GP sing 3 n n 
P O3' 3GP sing 4 n n 
O2P HOP2 3GP sing 5 n n 
O3P HOP3 3GP sing 6 n n 
O5' C5' 3GP sing 7 n n 
O5' HO5' 3GP sing 8 n n 
C5' C4' 3GP sing 9 n n 
C5' "H5'1" 3GP sing 10 n n 
C5' "H5'2" 3GP sing 11 n n 
C4' O4' 3GP sing 12 n n 
C4' C3' 3GP sing 13 n n 
C4' H4' 3GP sing 14 n n 
O4' C1' 3GP sing 15 n n 
C3' O3' 3GP sing 16 n n 
C3' C2' 3GP sing 17 n n 
C3' H3' 3GP sing 18 n n 
C2' O2' 3GP sing 19 n n 
C2' C1' 3GP sing 20 n n 
C2' H2' 3GP sing 21 n n 
O2' HO2' 3GP sing 22 n n 
C1' N9 3GP sing 23 n n 
C1' H1' 3GP sing 24 n n 
N9 C8 3GP sing 25 n y 
N9 C4 3GP sing 26 n y 
C8 N7 3GP doub 27 n y 
C8 H8 3GP sing 28 n n 
N7 C5 3GP sing 29 n y 
C5 C6 3GP sing 30 n n 
C5 C4 3GP doub 31 n y 
C6 O6 3GP doub 32 n n 
C6 N1 3GP sing 33 n n 
N1 C2 3GP sing 34 n n 
N1 HN1 3GP sing 35 n n 
C2 N2 3GP sing 36 n n 
C2 N3 3GP doub 37 n n 
N2 HN21 3GP sing 38 n n 
N2 HN22 3GP sing 39 n n 
N3 C4 3GP sing 40 n n 
#
_atom_sites.entry_id                     3GSP 
_atom_sites.fract_transf_matrix[1][1]    0.020713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 107 107 CA CA . 
C 3 SGP A 1 105 105 SGP SGP . 
D 4 3GP A 1 106 106 3GP 3GP . 
E 5 HOH A 1 108 108 HOH HOH . 
E 5 HOH A 2 109 109 HOH HOH . 
E 5 HOH A 3 110 110 HOH HOH . 
E 5 HOH A 4 111 111 HOH HOH . 
E 5 HOH A 5 112 112 HOH HOH . 
E 5 HOH A 6 113 113 HOH HOH . 
E 5 HOH A 7 114 114 HOH HOH . 
E 5 HOH A 8 115 115 HOH HOH . 
E 5 HOH A 9 116 116 HOH HOH . 
E 5 HOH A 10 117 117 HOH HOH . 
E 5 HOH A 11 118 118 HOH HOH . 
E 5 HOH A 12 119 119 HOH HOH . 
E 5 HOH A 13 120 120 HOH HOH . 
E 5 HOH A 14 121 121 HOH HOH . 
E 5 HOH A 15 122 122 HOH HOH . 
E 5 HOH A 16 123 123 HOH HOH . 
E 5 HOH A 17 124 124 HOH HOH . 
E 5 HOH A 18 125 125 HOH HOH . 
E 5 HOH A 19 126 126 HOH HOH . 
E 5 HOH A 20 127 127 HOH HOH . 
E 5 HOH A 21 128 128 HOH HOH . 
E 5 HOH A 22 129 129 HOH HOH . 
E 5 HOH A 23 130 130 HOH HOH . 
E 5 HOH A 24 131 131 HOH HOH . 
E 5 HOH A 25 132 132 HOH HOH . 
E 5 HOH A 26 133 133 HOH HOH . 
E 5 HOH A 27 134 134 HOH HOH . 
E 5 HOH A 28 135 135 HOH HOH . 
E 5 HOH A 29 136 136 HOH HOH . 
E 5 HOH A 30 137 137 HOH HOH . 
E 5 HOH A 31 138 138 HOH HOH . 
E 5 HOH A 32 139 139 HOH HOH . 
E 5 HOH A 33 140 140 HOH HOH . 
E 5 HOH A 34 141 141 HOH HOH . 
E 5 HOH A 35 142 142 HOH HOH . 
E 5 HOH A 36 143 143 HOH HOH . 
E 5 HOH A 37 144 144 HOH HOH . 
E 5 HOH A 38 145 145 HOH HOH . 
E 5 HOH A 39 146 146 HOH HOH . 
E 5 HOH A 40 147 147 HOH HOH . 
E 5 HOH A 41 148 148 HOH HOH . 
E 5 HOH A 42 149 149 HOH HOH . 
E 5 HOH A 43 150 150 HOH HOH . 
E 5 HOH A 44 151 151 HOH HOH . 
E 5 HOH A 45 152 152 HOH HOH . 
E 5 HOH A 46 153 153 HOH HOH . 
E 5 HOH A 47 154 154 HOH HOH . 
E 5 HOH A 48 155 155 HOH HOH . 
E 5 HOH A 49 156 156 HOH HOH . 
E 5 HOH A 50 157 157 HOH HOH . 
E 5 HOH A 51 158 158 HOH HOH . 
E 5 HOH A 52 159 159 HOH HOH . 
E 5 HOH A 53 160 160 HOH HOH . 
E 5 HOH A 54 161 161 HOH HOH . 
E 5 HOH A 55 162 162 HOH HOH . 
E 5 HOH A 56 163 163 HOH HOH . 
E 5 HOH A 57 164 164 HOH HOH . 
E 5 HOH A 58 165 165 HOH HOH . 
E 5 HOH A 59 166 166 HOH HOH . 
E 5 HOH A 60 167 167 HOH HOH . 
E 5 HOH A 61 168 168 HOH HOH . 
E 5 HOH A 62 169 169 HOH HOH . 
E 5 HOH A 63 170 170 HOH HOH . 
E 5 HOH A 64 171 171 HOH HOH . 
E 5 HOH A 65 172 172 HOH HOH . 
E 5 HOH A 66 173 173 HOH HOH . 
E 5 HOH A 67 174 174 HOH HOH . 
E 5 HOH A 68 175 175 HOH HOH . 
E 5 HOH A 69 176 176 HOH HOH . 
E 5 HOH A 70 177 177 HOH HOH . 
E 5 HOH A 71 178 178 HOH HOH . 
E 5 HOH A 72 179 179 HOH HOH . 
E 5 HOH A 73 180 180 HOH HOH . 
E 5 HOH A 74 181 181 HOH HOH . 
E 5 HOH A 75 182 182 HOH HOH . 
E 5 HOH A 76 183 183 HOH HOH . 
E 5 HOH A 77 184 184 HOH HOH . 
E 5 HOH A 78 185 185 HOH HOH . 
E 5 HOH A 79 186 186 HOH HOH . 
E 5 HOH A 80 187 187 HOH HOH . 
E 5 HOH A 81 188 188 HOH HOH . 
E 5 HOH A 82 189 189 HOH HOH . 
E 5 HOH A 83 190 190 HOH HOH . 
E 5 HOH A 84 191 191 HOH HOH . 
E 5 HOH A 85 192 192 HOH HOH . 
E 5 HOH A 86 193 193 HOH HOH . 
E 5 HOH A 87 194 194 HOH HOH . 
E 5 HOH A 88 195 195 HOH HOH . 
E 5 HOH A 89 196 196 HOH HOH . 
E 5 HOH A 90 197 197 HOH HOH . 
E 5 HOH A 91 198 198 HOH HOH . 
E 5 HOH A 92 199 199 HOH HOH . 
E 5 HOH A 93 200 200 HOH HOH . 
E 5 HOH A 94 201 201 HOH HOH . 
E 5 HOH A 95 202 202 HOH HOH . 
E 5 HOH A 96 203 203 HOH HOH . 
E 5 HOH A 97 204 204 HOH HOH . 
E 5 HOH A 98 205 205 HOH HOH . 
E 5 HOH A 99 206 206 HOH HOH . 
E 5 HOH A 100 207 207 HOH HOH . 
E 5 HOH A 101 208 208 HOH HOH . 
E 5 HOH A 102 209 209 HOH HOH . 
E 5 HOH A 103 210 210 HOH HOH . 
E 5 HOH A 104 211 211 HOH HOH . 
E 5 HOH A 105 212 212 HOH HOH . 
E 5 HOH A 106 213 213 HOH HOH . 
E 5 HOH A 107 214 214 HOH HOH . 
E 5 HOH A 108 215 215 HOH HOH . 
E 5 HOH A 109 216 216 HOH HOH . 
E 5 HOH A 110 217 217 HOH HOH . 
E 5 HOH A 111 218 218 HOH HOH . 
E 5 HOH A 112 219 219 HOH HOH . 
E 5 HOH A 113 220 220 HOH HOH . 
E 5 HOH A 114 221 221 HOH HOH . 
E 5 HOH A 115 222 222 HOH HOH . 
E 5 HOH A 116 223 223 HOH HOH . 
E 5 HOH A 117 224 224 HOH HOH . 
E 5 HOH A 118 225 225 HOH HOH . 
E 5 HOH A 119 226 226 HOH HOH . 
E 5 HOH A 120 227 227 HOH HOH . 
E 5 HOH A 121 228 228 HOH HOH . 
E 5 HOH A 122 229 229 HOH HOH . 
E 5 HOH A 123 230 230 HOH HOH . 
E 5 HOH A 124 231 231 HOH HOH . 
E 5 HOH A 125 232 232 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3GP . . . D 4 23.67 35.351 19.962 0.6 25.11 ? P 3GP 106 A 1 
HETATM 2 O O1P 3GP . . . D 4 24.537 34.163 19.748 0.6 28.92 ? O1P 3GP 106 A 1 
HETATM 3 O O2P 3GP . . . D 4 24.116 36.272 21.04 0.6 25.78 ? O2P 3GP 106 A 1 
HETATM 4 O O3P 3GP . . . D 4 23.249 36.026 18.716 0.6 26.17 ? O3P 3GP 106 A 1 
HETATM 5 O O5' 3GP . . . D 4 20.269 37.838 22.554 0.6 30.87 ? O5' 3GP 106 A 1 
HETATM 6 C C5' 3GP . . . D 4 19.815 36.517 22.862 0.6 24.59 ? C5' 3GP 106 A 1 
HETATM 7 C C4' 3GP . . . D 4 20.77 35.378 22.405 0.6 25.14 ? C4' 3GP 106 A 1 
HETATM 8 O O4' 3GP . . . D 4 20.068 34.109 22.495 0.6 22.22 ? O4' 3GP 106 A 1 
HETATM 9 C C3' 3GP . . . D 4 21.164 35.524 20.924 0.6 25.41 ? C3' 3GP 106 A 1 
HETATM 10 O O3' 3GP . . . D 4 22.314 34.699 20.567 0.6 26.08 ? O3' 3GP 106 A 1 
HETATM 11 C C2' 3GP . . . D 4 19.919 34.945 20.316 0.6 23.15 ? C2' 3GP 106 A 1 
HETATM 12 O O2' 3GP . . . D 4 20.185 34.606 18.973 0.6 22.16 ? O2' 3GP 106 A 1 
HETATM 13 C C1' 3GP . . . D 4 19.688 33.71 21.164 0.6 20.27 ? C1' 3GP 106 A 1 
HETATM 14 N N9 3GP . . . D 4 18.257 33.276 21.055 0.6 17.26 ? N9 3GP 106 A 1 
HETATM 15 C C8 3GP . . . D 4 17.756 32.16 20.419 0.6 14.41 ? C8 3GP 106 A 1 
HETATM 16 N N7 3GP . . . D 4 16.453 32.052 20.466 0.6 12.64 ? N7 3GP 106 A 1 
HETATM 17 C C5 3GP . . . D 4 16.056 33.174 21.181 0.6 12.78 ? C5 3GP 106 A 1 
HETATM 18 C C6 3GP . . . D 4 14.763 33.615 21.562 0.6 11.16 ? C6 3GP 106 A 1 
HETATM 19 O O6 3GP . . . D 4 13.71 33.074 21.272 0.6 10.72 ? O6 3GP 106 A 1 
HETATM 20 N N1 3GP . . . D 4 14.776 34.791 22.292 0.6 11.72 ? N1 3GP 106 A 1 
HETATM 21 C C2 3GP . . . D 4 15.917 35.484 22.622 0.6 13.7 ? C2 3GP 106 A 1 
HETATM 22 N N2 3GP . . . D 4 15.776 36.587 23.357 0.6 10.68 ? N2 3GP 106 A 1 
HETATM 23 N N3 3GP . . . D 4 17.14 35.078 22.26 0.6 14.99 ? N3 3GP 106 A 1 
HETATM 24 C C4 3GP . . . D 4 17.141 33.925 21.549 0.6 14.02 ? C4 3GP 106 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#