data_3GT8 # _model_server_result.job_id 7ikIXv7ZVTfQZg7qNadm3Q _model_server_result.datetime_utc '2024-11-24 15:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":14}' # _entry.id 3GT8 # _exptl.entry_id 3GT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.74 _cell.angle_gamma 90 _cell.entry_id 3GT8 _cell.length_a 61.764 _cell.length_b 72.411 _cell.length_c 143.376 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J,K,N,P 1 1 B,D,H,I,L,M,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G MG MG . B MG 11 1_555 A OD1 ASN 150 B ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 G MG MG . B MG 11 1_555 A OD2 ASP 163 B ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 H O3A ANP . A ANP 2 1_555 I MG MG . A MG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 I MG MG . A MG 12 1_555 B OD1 ASN 150 A ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc5 I MG MG . A MG 12 1_555 B OD2 ASP 163 A ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 J O1B ANP . C ANP 3 1_555 K MG MG . C MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc7 J O2A ANP . C ANP 3 1_555 K MG MG . C MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 K MG MG . C MG 13 1_555 P O HOH . C HOH 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc9 K MG MG . C MG 13 1_555 C OD1 ASN 150 C ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc10 K MG MG . C MG 13 1_555 C OD2 ASP 163 C ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 L O2A ANP . D ANP 4 1_555 M MG MG . D MG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 M MG MG . D MG 14 1_555 D OD1 ASN 150 D ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GT8 _atom_sites.fract_transf_matrix[1][1] 0.016191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 ANP B 1 1 1 ANP ANP . G 4 MG B 1 11 11 MG MG . H 3 ANP A 1 2 2 ANP ANP . I 4 MG A 1 12 12 MG MG . J 3 ANP C 1 3 3 ANP ANP . K 4 MG C 1 13 13 MG MG . L 3 ANP D 1 4 4 ANP ANP . M 4 MG D 1 14 14 MG MG . N 5 HOH B 1 15 15 HOH HOH . N 5 HOH B 2 16 16 HOH HOH . N 5 HOH B 3 17 17 HOH HOH . N 5 HOH B 4 19 19 HOH HOH . N 5 HOH B 5 20 20 HOH HOH . N 5 HOH B 6 21 21 HOH HOH . N 5 HOH B 7 22 22 HOH HOH . N 5 HOH B 8 24 24 HOH HOH . N 5 HOH B 9 25 25 HOH HOH . N 5 HOH B 10 26 26 HOH HOH . N 5 HOH B 11 36 36 HOH HOH . N 5 HOH B 12 47 47 HOH HOH . N 5 HOH B 13 48 48 HOH HOH . N 5 HOH B 14 49 49 HOH HOH . N 5 HOH B 15 50 50 HOH HOH . N 5 HOH B 16 51 51 HOH HOH . N 5 HOH B 17 52 52 HOH HOH . N 5 HOH B 18 53 53 HOH HOH . N 5 HOH B 19 55 55 HOH HOH . O 5 HOH A 1 18 18 HOH HOH . O 5 HOH A 2 27 27 HOH HOH . O 5 HOH A 3 28 28 HOH HOH . O 5 HOH A 4 29 29 HOH HOH . O 5 HOH A 5 30 30 HOH HOH . O 5 HOH A 6 31 31 HOH HOH . O 5 HOH A 7 32 32 HOH HOH . O 5 HOH A 8 33 33 HOH HOH . O 5 HOH A 9 35 35 HOH HOH . O 5 HOH A 10 40 40 HOH HOH . O 5 HOH A 11 54 54 HOH HOH . P 5 HOH C 1 34 34 HOH HOH . P 5 HOH C 2 39 39 HOH HOH . P 5 HOH C 3 41 41 HOH HOH . P 5 HOH C 4 42 42 HOH HOH . P 5 HOH C 5 43 43 HOH HOH . P 5 HOH C 6 44 44 HOH HOH . P 5 HOH C 7 45 45 HOH HOH . Q 5 HOH D 1 23 23 HOH HOH . Q 5 HOH D 2 37 37 HOH HOH . Q 5 HOH D 3 38 38 HOH HOH . Q 5 HOH D 4 46 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.699 _atom_site.Cartn_y -26.239 _atom_site.Cartn_z -19.289 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 14 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #