data_3GT8 # _model_server_result.job_id pE0uqGxkqYtiXjNYzvSZNw _model_server_result.datetime_utc '2024-10-16 21:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":4}' # _entry.id 3GT8 # _exptl.entry_id 3GT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.74 _cell.angle_gamma 90 _cell.entry_id 3GT8 _cell.length_a 61.764 _cell.length_b 72.411 _cell.length_c 143.376 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J,K,N,P 1 1 B,D,H,I,L,M,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G MG MG . B MG 11 1_555 A OD1 ASN 150 B ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 G MG MG . B MG 11 1_555 A OD2 ASP 163 B ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 H O3A ANP . A ANP 2 1_555 I MG MG . A MG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 I MG MG . A MG 12 1_555 B OD1 ASN 150 A ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc5 I MG MG . A MG 12 1_555 B OD2 ASP 163 A ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 J O1B ANP . C ANP 3 1_555 K MG MG . C MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc7 J O2A ANP . C ANP 3 1_555 K MG MG . C MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 K MG MG . C MG 13 1_555 P O HOH . C HOH 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc9 K MG MG . C MG 13 1_555 C OD1 ASN 150 C ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc10 K MG MG . C MG 13 1_555 C OD2 ASP 163 C ASP 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 L O2A ANP . D ANP 4 1_555 M MG MG . D MG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 M MG MG . D MG 14 1_555 D OD1 ASN 150 D ASN 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3GT8 _atom_sites.fract_transf_matrix[1][1] 0.016191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 ANP B 1 1 1 ANP ANP . G 4 MG B 1 11 11 MG MG . H 3 ANP A 1 2 2 ANP ANP . I 4 MG A 1 12 12 MG MG . J 3 ANP C 1 3 3 ANP ANP . K 4 MG C 1 13 13 MG MG . L 3 ANP D 1 4 4 ANP ANP . M 4 MG D 1 14 14 MG MG . N 5 HOH B 1 15 15 HOH HOH . N 5 HOH B 2 16 16 HOH HOH . N 5 HOH B 3 17 17 HOH HOH . N 5 HOH B 4 19 19 HOH HOH . N 5 HOH B 5 20 20 HOH HOH . N 5 HOH B 6 21 21 HOH HOH . N 5 HOH B 7 22 22 HOH HOH . N 5 HOH B 8 24 24 HOH HOH . N 5 HOH B 9 25 25 HOH HOH . N 5 HOH B 10 26 26 HOH HOH . N 5 HOH B 11 36 36 HOH HOH . N 5 HOH B 12 47 47 HOH HOH . N 5 HOH B 13 48 48 HOH HOH . N 5 HOH B 14 49 49 HOH HOH . N 5 HOH B 15 50 50 HOH HOH . N 5 HOH B 16 51 51 HOH HOH . N 5 HOH B 17 52 52 HOH HOH . N 5 HOH B 18 53 53 HOH HOH . N 5 HOH B 19 55 55 HOH HOH . O 5 HOH A 1 18 18 HOH HOH . O 5 HOH A 2 27 27 HOH HOH . O 5 HOH A 3 28 28 HOH HOH . O 5 HOH A 4 29 29 HOH HOH . O 5 HOH A 5 30 30 HOH HOH . O 5 HOH A 6 31 31 HOH HOH . O 5 HOH A 7 32 32 HOH HOH . O 5 HOH A 8 33 33 HOH HOH . O 5 HOH A 9 35 35 HOH HOH . O 5 HOH A 10 40 40 HOH HOH . O 5 HOH A 11 54 54 HOH HOH . P 5 HOH C 1 34 34 HOH HOH . P 5 HOH C 2 39 39 HOH HOH . P 5 HOH C 3 41 41 HOH HOH . P 5 HOH C 4 42 42 HOH HOH . P 5 HOH C 5 43 43 HOH HOH . P 5 HOH C 6 44 44 HOH HOH . P 5 HOH C 7 45 45 HOH HOH . Q 5 HOH D 1 23 23 HOH HOH . Q 5 HOH D 2 37 37 HOH HOH . Q 5 HOH D 3 38 38 HOH HOH . Q 5 HOH D 4 46 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . L 3 26.312 -27.713 -22.79 1 46.87 ? PG ANP 4 D 1 HETATM 2 O O1G ANP . . . L 3 27.516 -28.166 -22.05 1 46.33 ? O1G ANP 4 D 1 HETATM 3 O O2G ANP . . . L 3 26.161 -28.463 -24.217 1 55.64 ? O2G ANP 4 D 1 HETATM 4 O O3G ANP . . . L 3 26.38 -26.136 -23.148 1 71.52 ? O3G ANP 4 D 1 HETATM 5 P PB ANP . . . L 3 25.247 -28.506 -20.491 1 79.55 ? PB ANP 4 D 1 HETATM 6 O O1B ANP . . . L 3 25.557 -27.404 -19.546 1 80.32 ? O1B ANP 4 D 1 HETATM 7 O O2B ANP . . . L 3 23.921 -29.325 -20.05 1 25.93 ? O2B ANP 4 D 1 HETATM 8 N N3B ANP . . . L 3 24.922 -27.951 -21.987 1 56.15 ? N3B ANP 4 D 1 HETATM 9 P PA ANP . . . L 3 27.717 -29.521 -19.66 1 48.8 ? PA ANP 4 D 1 HETATM 10 O O1A ANP . . . L 3 28.948 -30.017 -20.324 1 47.75 ? O1A ANP 4 D 1 HETATM 11 O O2A ANP . . . L 3 27.844 -27.964 -19.235 1 129.64 ? O2A ANP 4 D 1 HETATM 12 O O3A ANP . . . L 3 26.432 -29.586 -20.643 1 40.88 ? O3A ANP 4 D 1 HETATM 13 O O5' ANP . . . L 3 27.324 -30.335 -18.327 1 32.75 ? O5' ANP 4 D 1 HETATM 14 C C5' ANP . . . L 3 25.991 -30.824 -18.155 1 30.77 ? C5' ANP 4 D 1 HETATM 15 C C4' ANP . . . L 3 25.579 -30.784 -16.682 1 55.37 ? C4' ANP 4 D 1 HETATM 16 O O4' ANP . . . L 3 26.687 -30.338 -15.886 1 56.93 ? O4' ANP 4 D 1 HETATM 17 C C3' ANP . . . L 3 24.517 -29.702 -16.478 1 57.35 ? C3' ANP 4 D 1 HETATM 18 O O3' ANP . . . L 3 23.222 -30.307 -16.422 1 59.06 ? O3' ANP 4 D 1 HETATM 19 C C2' ANP . . . L 3 24.86 -29.103 -15.113 1 58.74 ? C2' ANP 4 D 1 HETATM 20 O O2' ANP . . . L 3 23.777 -29.33 -14.206 1 59.74 ? O2' ANP 4 D 1 HETATM 21 C C1' ANP . . . L 3 26.082 -29.903 -14.659 1 59.06 ? C1' ANP 4 D 1 HETATM 22 N N9 ANP . . . L 3 27.016 -29.01 -13.937 1 59.26 ? N9 ANP 4 D 1 HETATM 23 C C8 ANP . . . L 3 28.067 -28.382 -14.466 1 57.37 ? C8 ANP 4 D 1 HETATM 24 N N7 ANP . . . L 3 28.676 -27.667 -13.52 1 56.38 ? N7 ANP 4 D 1 HETATM 25 C C5 ANP . . . L 3 28.009 -27.841 -12.384 1 58.18 ? C5 ANP 4 D 1 HETATM 26 C C6 ANP . . . L 3 28.17 -27.36 -11.094 1 59.9 ? C6 ANP 4 D 1 HETATM 27 N N6 ANP . . . L 3 29.173 -26.536 -10.8 1 60.96 ? N6 ANP 4 D 1 HETATM 28 N N1 ANP . . . L 3 27.299 -27.737 -10.147 1 59.42 ? N1 ANP 4 D 1 HETATM 29 C C2 ANP . . . L 3 26.3 -28.557 -10.435 1 58.56 ? C2 ANP 4 D 1 HETATM 30 N N3 ANP . . . L 3 26.119 -29.033 -11.656 1 58.04 ? N3 ANP 4 D 1 HETATM 31 C C4 ANP . . . L 3 26.954 -28.694 -12.647 1 58.57 ? C4 ANP 4 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #