data_3GU6 # _model_server_result.job_id l9St_c1Hu6bd1dmu2jxPjA _model_server_result.datetime_utc '2024-11-04 20:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":296}' # _entry.id 3GU6 # _exptl.entry_id 3GU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GU6 _cell.length_a 46.87 _cell.length_b 62.271 _cell.length_c 88.114 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3GU6 _atom_sites.fract_transf_matrix[1][1] 0.021336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 296 296 ADP ADP . C 3 HOH A 1 297 297 HOH HOH . C 3 HOH A 2 298 298 HOH HOH . C 3 HOH A 3 299 299 HOH HOH . C 3 HOH A 4 300 300 HOH HOH . C 3 HOH A 5 301 301 HOH HOH . C 3 HOH A 6 302 302 HOH HOH . C 3 HOH A 7 303 303 HOH HOH . C 3 HOH A 8 304 304 HOH HOH . C 3 HOH A 9 305 305 HOH HOH . C 3 HOH A 10 306 306 HOH HOH . C 3 HOH A 11 307 307 HOH HOH . C 3 HOH A 12 308 308 HOH HOH . C 3 HOH A 13 309 309 HOH HOH . C 3 HOH A 14 310 310 HOH HOH . C 3 HOH A 15 311 311 HOH HOH . C 3 HOH A 16 312 312 HOH HOH . C 3 HOH A 17 313 313 HOH HOH . C 3 HOH A 18 314 314 HOH HOH . C 3 HOH A 19 315 315 HOH HOH . C 3 HOH A 20 316 316 HOH HOH . C 3 HOH A 21 317 317 HOH HOH . C 3 HOH A 22 318 318 HOH HOH . C 3 HOH A 23 319 319 HOH HOH . C 3 HOH A 24 320 320 HOH HOH . C 3 HOH A 25 321 321 HOH HOH . C 3 HOH A 26 322 322 HOH HOH . C 3 HOH A 27 323 323 HOH HOH . C 3 HOH A 28 324 324 HOH HOH . C 3 HOH A 29 325 325 HOH HOH . C 3 HOH A 30 326 326 HOH HOH . C 3 HOH A 31 327 327 HOH HOH . C 3 HOH A 32 328 328 HOH HOH . C 3 HOH A 33 329 329 HOH HOH . C 3 HOH A 34 330 330 HOH HOH . C 3 HOH A 35 331 331 HOH HOH . C 3 HOH A 36 332 332 HOH HOH . C 3 HOH A 37 333 333 HOH HOH . C 3 HOH A 38 334 334 HOH HOH . C 3 HOH A 39 335 335 HOH HOH . C 3 HOH A 40 336 336 HOH HOH . C 3 HOH A 41 337 337 HOH HOH . C 3 HOH A 42 338 338 HOH HOH . C 3 HOH A 43 339 339 HOH HOH . C 3 HOH A 44 340 340 HOH HOH . C 3 HOH A 45 341 341 HOH HOH . C 3 HOH A 46 342 342 HOH HOH . C 3 HOH A 47 343 343 HOH HOH . C 3 HOH A 48 344 344 HOH HOH . C 3 HOH A 49 345 345 HOH HOH . C 3 HOH A 50 346 346 HOH HOH . C 3 HOH A 51 347 347 HOH HOH . C 3 HOH A 52 348 348 HOH HOH . C 3 HOH A 53 349 349 HOH HOH . C 3 HOH A 54 350 350 HOH HOH . C 3 HOH A 55 351 351 HOH HOH . C 3 HOH A 56 352 352 HOH HOH . C 3 HOH A 57 353 353 HOH HOH . C 3 HOH A 58 354 354 HOH HOH . C 3 HOH A 59 355 355 HOH HOH . C 3 HOH A 60 356 356 HOH HOH . C 3 HOH A 61 357 357 HOH HOH . C 3 HOH A 62 358 358 HOH HOH . C 3 HOH A 63 359 359 HOH HOH . C 3 HOH A 64 360 360 HOH HOH . C 3 HOH A 65 361 361 HOH HOH . C 3 HOH A 66 362 362 HOH HOH . C 3 HOH A 67 363 363 HOH HOH . C 3 HOH A 68 364 364 HOH HOH . C 3 HOH A 69 365 365 HOH HOH . C 3 HOH A 70 366 366 HOH HOH . C 3 HOH A 71 367 367 HOH HOH . C 3 HOH A 72 368 368 HOH HOH . C 3 HOH A 73 369 369 HOH HOH . C 3 HOH A 74 370 370 HOH HOH . C 3 HOH A 75 371 371 HOH HOH . C 3 HOH A 76 372 372 HOH HOH . C 3 HOH A 77 373 373 HOH HOH . C 3 HOH A 78 374 374 HOH HOH . C 3 HOH A 79 375 375 HOH HOH . C 3 HOH A 80 376 376 HOH HOH . C 3 HOH A 81 377 377 HOH HOH . C 3 HOH A 82 378 378 HOH HOH . C 3 HOH A 83 379 379 HOH HOH . C 3 HOH A 84 380 380 HOH HOH . C 3 HOH A 85 381 381 HOH HOH . C 3 HOH A 86 382 382 HOH HOH . C 3 HOH A 87 383 383 HOH HOH . C 3 HOH A 88 384 384 HOH HOH . C 3 HOH A 89 385 385 HOH HOH . C 3 HOH A 90 386 386 HOH HOH . C 3 HOH A 91 387 387 HOH HOH . C 3 HOH A 92 388 388 HOH HOH . C 3 HOH A 93 389 389 HOH HOH . C 3 HOH A 94 390 390 HOH HOH . C 3 HOH A 95 391 391 HOH HOH . C 3 HOH A 96 392 392 HOH HOH . C 3 HOH A 97 393 393 HOH HOH . C 3 HOH A 98 394 394 HOH HOH . C 3 HOH A 99 395 395 HOH HOH . C 3 HOH A 100 396 396 HOH HOH . C 3 HOH A 101 397 397 HOH HOH . C 3 HOH A 102 398 398 HOH HOH . C 3 HOH A 103 399 399 HOH HOH . C 3 HOH A 104 400 400 HOH HOH . C 3 HOH A 105 401 401 HOH HOH . C 3 HOH A 106 402 402 HOH HOH . C 3 HOH A 107 403 403 HOH HOH . C 3 HOH A 108 404 404 HOH HOH . C 3 HOH A 109 405 405 HOH HOH . C 3 HOH A 110 406 406 HOH HOH . C 3 HOH A 111 407 407 HOH HOH . C 3 HOH A 112 408 408 HOH HOH . C 3 HOH A 113 409 409 HOH HOH . C 3 HOH A 114 410 410 HOH HOH . C 3 HOH A 115 411 411 HOH HOH . C 3 HOH A 116 412 412 HOH HOH . C 3 HOH A 117 413 413 HOH HOH . C 3 HOH A 118 414 414 HOH HOH . C 3 HOH A 119 415 415 HOH HOH . C 3 HOH A 120 416 416 HOH HOH . C 3 HOH A 121 417 417 HOH HOH . C 3 HOH A 122 418 418 HOH HOH . C 3 HOH A 123 419 419 HOH HOH . C 3 HOH A 124 420 420 HOH HOH . C 3 HOH A 125 421 421 HOH HOH . C 3 HOH A 126 422 422 HOH HOH . C 3 HOH A 127 423 423 HOH HOH . C 3 HOH A 128 424 424 HOH HOH . C 3 HOH A 129 425 425 HOH HOH . C 3 HOH A 130 426 426 HOH HOH . C 3 HOH A 131 427 427 HOH HOH . C 3 HOH A 132 428 428 HOH HOH . C 3 HOH A 133 429 429 HOH HOH . C 3 HOH A 134 430 430 HOH HOH . C 3 HOH A 135 431 431 HOH HOH . C 3 HOH A 136 432 432 HOH HOH . C 3 HOH A 137 433 433 HOH HOH . C 3 HOH A 138 434 434 HOH HOH . C 3 HOH A 139 435 435 HOH HOH . C 3 HOH A 140 436 436 HOH HOH . C 3 HOH A 141 437 437 HOH HOH . C 3 HOH A 142 438 438 HOH HOH . C 3 HOH A 143 439 439 HOH HOH . C 3 HOH A 144 440 440 HOH HOH . C 3 HOH A 145 441 441 HOH HOH . C 3 HOH A 146 442 442 HOH HOH . C 3 HOH A 147 443 443 HOH HOH . C 3 HOH A 148 444 444 HOH HOH . C 3 HOH A 149 445 445 HOH HOH . C 3 HOH A 150 446 446 HOH HOH . C 3 HOH A 151 447 447 HOH HOH . C 3 HOH A 152 448 448 HOH HOH . C 3 HOH A 153 449 449 HOH HOH . C 3 HOH A 154 450 450 HOH HOH . C 3 HOH A 155 451 451 HOH HOH . C 3 HOH A 156 452 452 HOH HOH . C 3 HOH A 157 453 453 HOH HOH . C 3 HOH A 158 454 454 HOH HOH . C 3 HOH A 159 455 455 HOH HOH . C 3 HOH A 160 456 456 HOH HOH . C 3 HOH A 161 457 457 HOH HOH . C 3 HOH A 162 458 458 HOH HOH . C 3 HOH A 163 459 459 HOH HOH . C 3 HOH A 164 460 460 HOH HOH . C 3 HOH A 165 461 461 HOH HOH . C 3 HOH A 166 462 462 HOH HOH . C 3 HOH A 167 463 463 HOH HOH . C 3 HOH A 168 464 464 HOH HOH . C 3 HOH A 169 465 465 HOH HOH . C 3 HOH A 170 466 466 HOH HOH . C 3 HOH A 171 467 467 HOH HOH . C 3 HOH A 172 468 468 HOH HOH . C 3 HOH A 173 469 469 HOH HOH . C 3 HOH A 174 470 470 HOH HOH . C 3 HOH A 175 471 471 HOH HOH . C 3 HOH A 176 472 472 HOH HOH . C 3 HOH A 177 473 473 HOH HOH . C 3 HOH A 178 474 474 HOH HOH . C 3 HOH A 179 475 475 HOH HOH . C 3 HOH A 180 476 476 HOH HOH . C 3 HOH A 181 477 477 HOH HOH . C 3 HOH A 182 478 478 HOH HOH . C 3 HOH A 183 479 479 HOH HOH . C 3 HOH A 184 480 480 HOH HOH . C 3 HOH A 185 481 481 HOH HOH . C 3 HOH A 186 482 482 HOH HOH . C 3 HOH A 187 483 483 HOH HOH . C 3 HOH A 188 484 484 HOH HOH . C 3 HOH A 189 485 485 HOH HOH . C 3 HOH A 190 486 486 HOH HOH . C 3 HOH A 191 487 487 HOH HOH . C 3 HOH A 192 488 488 HOH HOH . C 3 HOH A 193 489 489 HOH HOH . C 3 HOH A 194 490 490 HOH HOH . C 3 HOH A 195 491 491 HOH HOH . C 3 HOH A 196 492 492 HOH HOH . C 3 HOH A 197 493 493 HOH HOH . C 3 HOH A 198 494 494 HOH HOH . C 3 HOH A 199 495 495 HOH HOH . C 3 HOH A 200 496 496 HOH HOH . C 3 HOH A 201 497 497 HOH HOH . C 3 HOH A 202 498 498 HOH HOH . C 3 HOH A 203 499 499 HOH HOH . C 3 HOH A 204 500 500 HOH HOH . C 3 HOH A 205 501 501 HOH HOH . C 3 HOH A 206 502 502 HOH HOH . C 3 HOH A 207 503 503 HOH HOH . C 3 HOH A 208 504 504 HOH HOH . C 3 HOH A 209 505 505 HOH HOH . C 3 HOH A 210 506 506 HOH HOH . C 3 HOH A 211 507 507 HOH HOH . C 3 HOH A 212 508 508 HOH HOH . C 3 HOH A 213 509 509 HOH HOH . C 3 HOH A 214 510 510 HOH HOH . C 3 HOH A 215 511 511 HOH HOH . C 3 HOH A 216 512 512 HOH HOH . C 3 HOH A 217 513 513 HOH HOH . C 3 HOH A 218 514 514 HOH HOH . C 3 HOH A 219 515 515 HOH HOH . C 3 HOH A 220 516 516 HOH HOH . C 3 HOH A 221 517 517 HOH HOH . C 3 HOH A 222 518 518 HOH HOH . C 3 HOH A 223 519 519 HOH HOH . C 3 HOH A 224 520 520 HOH HOH . C 3 HOH A 225 521 521 HOH HOH . C 3 HOH A 226 522 522 HOH HOH . C 3 HOH A 227 523 523 HOH HOH . C 3 HOH A 228 524 524 HOH HOH . C 3 HOH A 229 525 525 HOH HOH . C 3 HOH A 230 526 526 HOH HOH . C 3 HOH A 231 527 527 HOH HOH . C 3 HOH A 232 528 528 HOH HOH . C 3 HOH A 233 529 529 HOH HOH . C 3 HOH A 234 530 530 HOH HOH . C 3 HOH A 235 531 531 HOH HOH . C 3 HOH A 236 532 532 HOH HOH . C 3 HOH A 237 533 533 HOH HOH . C 3 HOH A 238 534 534 HOH HOH . C 3 HOH A 239 535 535 HOH HOH . C 3 HOH A 240 536 536 HOH HOH . C 3 HOH A 241 537 537 HOH HOH . C 3 HOH A 242 538 538 HOH HOH . C 3 HOH A 243 539 539 HOH HOH . C 3 HOH A 244 540 540 HOH HOH . C 3 HOH A 245 541 541 HOH HOH . C 3 HOH A 246 542 542 HOH HOH . C 3 HOH A 247 543 543 HOH HOH . C 3 HOH A 248 544 544 HOH HOH . C 3 HOH A 249 545 545 HOH HOH . C 3 HOH A 250 546 546 HOH HOH . C 3 HOH A 251 547 547 HOH HOH . C 3 HOH A 252 548 548 HOH HOH . C 3 HOH A 253 550 550 HOH HOH . C 3 HOH A 254 551 551 HOH HOH . C 3 HOH A 255 552 552 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 17.402 -1.321 10.639 1 48.57 ? PB ADP 296 A 1 HETATM 2 O O1B ADP . . . B 2 18.281 -2.529 10.433 1 48.18 ? O1B ADP 296 A 1 HETATM 3 O O2B ADP . . . B 2 16.381 -1.48 11.748 1 48.17 ? O2B ADP 296 A 1 HETATM 4 O O3B ADP . . . B 2 16.823 -0.792 9.343 1 48.07 ? O3B ADP 296 A 1 HETATM 5 P PA ADP . . . B 2 19.789 0.252 10.542 1 40.53 ? PA ADP 296 A 1 HETATM 6 O O1A ADP . . . B 2 19.648 1.426 9.606 1 36.96 ? O1A ADP 296 A 1 HETATM 7 O O2A ADP . . . B 2 20.442 -1.03 10.069 1 41.52 ? O2A ADP 296 A 1 HETATM 8 O O3A ADP . . . B 2 18.371 -0.144 11.205 1 44.69 ? O3A ADP 296 A 1 HETATM 9 O O5' ADP . . . B 2 20.67 0.805 11.762 1 37.08 ? O5' ADP 296 A 1 HETATM 10 C C5' ADP . . . B 2 21.06 -0.053 12.828 1 31.9 ? C5' ADP 296 A 1 HETATM 11 C C4' ADP . . . B 2 22.184 0.635 13.575 1 27.25 ? C4' ADP 296 A 1 HETATM 12 O O4' ADP . . . B 2 23.334 0.789 12.729 1 25.3 ? O4' ADP 296 A 1 HETATM 13 C C3' ADP . . . B 2 21.822 2.048 14.003 1 26.02 ? C3' ADP 296 A 1 HETATM 14 O O3' ADP . . . B 2 21.037 2.096 15.202 1 26.83 ? O3' ADP 296 A 1 HETATM 15 C C2' ADP . . . B 2 23.182 2.708 14.114 1 23.89 ? C2' ADP 296 A 1 HETATM 16 O O2' ADP . . . B 2 23.773 2.404 15.387 1 25.05 ? O2' ADP 296 A 1 HETATM 17 C C1' ADP . . . B 2 23.976 2.039 12.99 1 20.58 ? C1' ADP 296 A 1 HETATM 18 N N9 ADP . . . B 2 23.947 2.888 11.764 1 17.39 ? N9 ADP 296 A 1 HETATM 19 C C8 ADP . . . B 2 22.999 2.876 10.8 1 18.14 ? C8 ADP 296 A 1 HETATM 20 N N7 ADP . . . B 2 23.275 3.788 9.828 1 17.41 ? N7 ADP 296 A 1 HETATM 21 C C5 ADP . . . B 2 24.413 4.404 10.165 1 17.17 ? C5 ADP 296 A 1 HETATM 22 C C6 ADP . . . B 2 25.265 5.452 9.567 1 18.77 ? C6 ADP 296 A 1 HETATM 23 N N6 ADP . . . B 2 24.912 6.051 8.404 1 17.73 ? N6 ADP 296 A 1 HETATM 24 N N1 ADP . . . B 2 26.389 5.813 10.217 1 18.21 ? N1 ADP 296 A 1 HETATM 25 C C2 ADP . . . B 2 26.743 5.222 11.385 1 18.68 ? C2 ADP 296 A 1 HETATM 26 N N3 ADP . . . B 2 26.014 4.251 11.977 1 19.09 ? N3 ADP 296 A 1 HETATM 27 C C4 ADP . . . B 2 24.862 3.802 11.425 1 18.35 ? C4 ADP 296 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #