data_3GUC
#
_model_server_result.job_id            LLp1OHw5Pj05FK_JV8rlRg 
_model_server_result.datetime_utc      '2024-11-22 14:58:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3guc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    3GUC 
#
_exptl.entry_id    3GUC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GUC 
_cell.length_a            77.394 
_cell.length_b            77.394 
_cell.length_c            205.892 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GUC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 189 A CYS 226 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 A SG CYS 192 A CYS 229 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc3 A SG CYS 266 A CYS 303 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc4 A SG CYS 271 A CYS 308 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc5 B SG CYS 189 B CYS 226 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc6 B SG CYS 192 B CYS 229 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc7 B SG CYS 266 B CYS 303 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc8 B SG CYS 271 B CYS 308 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     3GUC 
_atom_sites.fract_transf_matrix[1][1]    0.012921 
_atom_sites.fract_transf_matrix[1][2]    0.00746 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 3 ANP A 1 402 402 ANP ANP . 
E 2 ZN B 1 401 401 ZN ZN . 
F 4 HOH A 1 403 403 HOH HOH . 
F 4 HOH A 2 404 404 HOH HOH . 
F 4 HOH A 3 405 405 HOH HOH . 
F 4 HOH A 4 406 406 HOH HOH . 
F 4 HOH A 5 407 407 HOH HOH . 
F 4 HOH A 6 408 408 HOH HOH . 
F 4 HOH A 7 409 409 HOH HOH . 
F 4 HOH A 8 410 410 HOH HOH . 
F 4 HOH A 9 411 411 HOH HOH . 
F 4 HOH A 10 412 412 HOH HOH . 
F 4 HOH A 11 413 413 HOH HOH . 
F 4 HOH A 12 414 414 HOH HOH . 
F 4 HOH A 13 415 415 HOH HOH . 
F 4 HOH A 14 416 416 HOH HOH . 
F 4 HOH A 15 417 417 HOH HOH . 
F 4 HOH A 16 418 418 HOH HOH . 
F 4 HOH A 17 419 419 HOH HOH . 
F 4 HOH A 18 420 420 HOH HOH . 
F 4 HOH A 19 421 421 HOH HOH . 
F 4 HOH A 20 422 422 HOH HOH . 
F 4 HOH A 21 423 423 HOH HOH . 
F 4 HOH A 22 424 424 HOH HOH . 
F 4 HOH A 23 425 425 HOH HOH . 
F 4 HOH A 24 426 426 HOH HOH . 
F 4 HOH A 25 427 427 HOH HOH . 
F 4 HOH A 26 428 428 HOH HOH . 
F 4 HOH A 27 429 429 HOH HOH . 
F 4 HOH A 28 430 430 HOH HOH . 
F 4 HOH A 29 431 431 HOH HOH . 
F 4 HOH A 30 432 432 HOH HOH . 
F 4 HOH A 31 433 433 HOH HOH . 
F 4 HOH A 32 434 434 HOH HOH . 
F 4 HOH A 33 435 435 HOH HOH . 
F 4 HOH A 34 436 436 HOH HOH . 
F 4 HOH A 35 437 437 HOH HOH . 
F 4 HOH A 36 438 438 HOH HOH . 
F 4 HOH A 37 439 439 HOH HOH . 
F 4 HOH A 38 440 440 HOH HOH . 
F 4 HOH A 39 441 441 HOH HOH . 
F 4 HOH A 40 442 442 HOH HOH . 
F 4 HOH A 41 443 443 HOH HOH . 
F 4 HOH A 42 444 444 HOH HOH . 
F 4 HOH A 43 445 445 HOH HOH . 
F 4 HOH A 44 446 446 HOH HOH . 
F 4 HOH A 45 447 447 HOH HOH . 
F 4 HOH A 46 448 448 HOH HOH . 
F 4 HOH A 47 449 449 HOH HOH . 
F 4 HOH A 48 450 450 HOH HOH . 
F 4 HOH A 49 451 451 HOH HOH . 
F 4 HOH A 50 452 452 HOH HOH . 
F 4 HOH A 51 453 453 HOH HOH . 
F 4 HOH A 52 454 454 HOH HOH . 
F 4 HOH A 53 455 455 HOH HOH . 
F 4 HOH A 54 456 456 HOH HOH . 
F 4 HOH A 55 457 457 HOH HOH . 
F 4 HOH A 56 458 458 HOH HOH . 
F 4 HOH A 57 459 459 HOH HOH . 
F 4 HOH A 58 460 460 HOH HOH . 
F 4 HOH A 59 461 461 HOH HOH . 
F 4 HOH A 60 462 462 HOH HOH . 
F 4 HOH A 61 463 463 HOH HOH . 
F 4 HOH A 62 464 464 HOH HOH . 
F 4 HOH A 63 465 465 HOH HOH . 
F 4 HOH A 64 466 466 HOH HOH . 
F 4 HOH A 65 467 467 HOH HOH . 
F 4 HOH A 66 468 468 HOH HOH . 
F 4 HOH A 67 469 469 HOH HOH . 
F 4 HOH A 68 470 470 HOH HOH . 
G 4 HOH B 1 402 402 HOH HOH . 
G 4 HOH B 2 403 403 HOH HOH . 
G 4 HOH B 3 404 404 HOH HOH . 
G 4 HOH B 4 405 405 HOH HOH . 
G 4 HOH B 5 406 406 HOH HOH . 
G 4 HOH B 6 407 407 HOH HOH . 
G 4 HOH B 7 408 408 HOH HOH . 
G 4 HOH B 8 409 409 HOH HOH . 
G 4 HOH B 9 410 410 HOH HOH . 
G 4 HOH B 10 411 411 HOH HOH . 
G 4 HOH B 11 412 412 HOH HOH . 
G 4 HOH B 12 413 413 HOH HOH . 
G 4 HOH B 13 414 414 HOH HOH . 
G 4 HOH B 14 415 415 HOH HOH . 
G 4 HOH B 15 416 416 HOH HOH . 
G 4 HOH B 16 417 417 HOH HOH . 
G 4 HOH B 17 418 418 HOH HOH . 
G 4 HOH B 18 419 419 HOH HOH . 
G 4 HOH B 19 420 420 HOH HOH . 
G 4 HOH B 20 421 421 HOH HOH . 
G 4 HOH B 21 422 422 HOH HOH . 
G 4 HOH B 22 423 423 HOH HOH . 
G 4 HOH B 23 424 424 HOH HOH . 
G 4 HOH B 24 425 425 HOH HOH . 
G 4 HOH B 25 426 426 HOH HOH . 
G 4 HOH B 26 427 427 HOH HOH . 
G 4 HOH B 27 428 428 HOH HOH . 
G 4 HOH B 28 429 429 HOH HOH . 
G 4 HOH B 29 430 430 HOH HOH . 
G 4 HOH B 30 431 431 HOH HOH . 
G 4 HOH B 31 432 432 HOH HOH . 
G 4 HOH B 32 433 433 HOH HOH . 
G 4 HOH B 33 434 434 HOH HOH . 
G 4 HOH B 34 435 435 HOH HOH . 
G 4 HOH B 35 436 436 HOH HOH . 
G 4 HOH B 36 437 437 HOH HOH . 
G 4 HOH B 37 438 438 HOH HOH . 
G 4 HOH B 38 439 439 HOH HOH . 
G 4 HOH B 39 440 440 HOH HOH . 
G 4 HOH B 40 441 441 HOH HOH . 
G 4 HOH B 41 442 442 HOH HOH . 
G 4 HOH B 42 443 443 HOH HOH . 
G 4 HOH B 43 444 444 HOH HOH . 
G 4 HOH B 44 445 445 HOH HOH . 
G 4 HOH B 45 446 446 HOH HOH . 
G 4 HOH B 46 447 447 HOH HOH . 
G 4 HOH B 47 448 448 HOH HOH . 
G 4 HOH B 48 449 449 HOH HOH . 
G 4 HOH B 49 450 450 HOH HOH . 
G 4 HOH B 50 451 451 HOH HOH . 
G 4 HOH B 51 452 452 HOH HOH . 
G 4 HOH B 52 453 453 HOH HOH . 
G 4 HOH B 53 454 454 HOH HOH . 
G 4 HOH B 54 455 455 HOH HOH . 
G 4 HOH B 55 456 456 HOH HOH . 
G 4 HOH B 56 457 457 HOH HOH . 
G 4 HOH B 57 458 458 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ANP . . . D 3 -39.121 27.672 -12.751 1 68.64 ? PB ANP 402 A 1 
HETATM 2 O O1B ANP . . . D 3 -39.69 28.707 -11.815 1 68.34 ? O1B ANP 402 A 1 
HETATM 3 O O2B ANP . . . D 3 -38.272 26.597 -12.114 1 68.46 ? O2B ANP 402 A 1 
HETATM 4 N N3B ANP . . . D 3 -40.5 26.948 -13.578 1 69 ? N3B ANP 402 A 1 
HETATM 5 P PA ANP . . . D 3 -36.629 28.194 -14.183 1 65.99 ? PA ANP 402 A 1 
HETATM 6 O O1A ANP . . . D 3 -36.176 29.236 -15.184 1 63.96 ? O1A ANP 402 A 1 
HETATM 7 O O2A ANP . . . D 3 -35.844 28.089 -12.886 1 66.63 ? O2A ANP 402 A 1 
HETATM 8 O O3A ANP . . . D 3 -38.214 28.444 -13.87 1 67.46 ? O3A ANP 402 A 1 
HETATM 9 O O5' ANP . . . D 3 -36.655 26.707 -14.826 1 65.91 ? O5' ANP 402 A 1 
HETATM 10 C C5' ANP . . . D 3 -37.113 26.448 -16.155 1 64.84 ? C5' ANP 402 A 1 
HETATM 11 C C4' ANP . . . D 3 -36.284 25.333 -16.783 1 63.47 ? C4' ANP 402 A 1 
HETATM 12 O O4' ANP . . . D 3 -36.959 24.777 -17.925 1 62.8 ? O4' ANP 402 A 1 
HETATM 13 C C3' ANP . . . D 3 -34.924 25.839 -17.254 1 62.13 ? C3' ANP 402 A 1 
HETATM 14 O O3' ANP . . . D 3 -33.906 25.013 -16.684 1 58.27 ? O3' ANP 402 A 1 
HETATM 15 C C2' ANP . . . D 3 -34.972 25.681 -18.768 1 62.15 ? C2' ANP 402 A 1 
HETATM 16 O O2' ANP . . . D 3 -33.68 25.416 -19.336 1 57.62 ? O2' ANP 402 A 1 
HETATM 17 C C1' ANP . . . D 3 -36.002 24.566 -18.966 1 61.81 ? C1' ANP 402 A 1 
HETATM 18 N N9 ANP . . . D 3 -36.614 24.646 -20.314 1 61.45 ? N9 ANP 402 A 1 
HETATM 19 C C8 ANP . . . D 3 -37.223 25.735 -20.808 1 60.47 ? C8 ANP 402 A 1 
HETATM 20 N N7 ANP . . . D 3 -37.675 25.507 -22.061 1 59.78 ? N7 ANP 402 A 1 
HETATM 21 C C5 ANP . . . D 3 -37.356 24.239 -22.391 1 59.24 ? C5 ANP 402 A 1 
HETATM 22 C C6 ANP . . . D 3 -37.523 23.37 -23.587 1 58 ? C6 ANP 402 A 1 
HETATM 23 N N6 ANP . . . D 3 -38.154 23.845 -24.691 1 54.49 ? N6 ANP 402 A 1 
HETATM 24 N N1 ANP . . . D 3 -37.043 22.103 -23.527 1 58.05 ? N1 ANP 402 A 1 
HETATM 25 C C2 ANP . . . D 3 -36.415 21.634 -22.436 1 57.19 ? C2 ANP 402 A 1 
HETATM 26 N N3 ANP . . . D 3 -36.214 22.38 -21.333 1 58.7 ? N3 ANP 402 A 1 
HETATM 27 C C4 ANP . . . D 3 -36.649 23.669 -21.24 1 59.97 ? C4 ANP 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#