data_3GUH # _model_server_result.job_id Zh_b92iMa0OT1yIBpLLQTA _model_server_result.datetime_utc '2024-11-24 17:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3guh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":486}' # _entry.id 3GUH # _exptl.entry_id 3GUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GUH _cell.length_a 125.841 _cell.length_b 125.841 _cell.length_c 153.263 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 44 n n PB O2B ADP sing 45 n n PB O3B ADP sing 46 n n PB O3A ADP sing 47 n n O2B HOB2 ADP sing 48 n n O3B HOB3 ADP sing 49 n n PA O1A ADP doub 50 n n PA O2A ADP sing 51 n n PA O3A ADP sing 52 n n PA O5' ADP sing 53 n n O2A HOA2 ADP sing 54 n n O5' C5' ADP sing 55 n n C5' C4' ADP sing 56 n n C5' "H5'1" ADP sing 57 n n C5' "H5'2" ADP sing 58 n n C4' O4' ADP sing 59 n n C4' C3' ADP sing 60 n n C4' H4' ADP sing 61 n n O4' C1' ADP sing 62 n n C3' O3' ADP sing 63 n n C3' C2' ADP sing 64 n n C3' H3' ADP sing 65 n n O3' HO3' ADP sing 66 n n C2' O2' ADP sing 67 n n C2' C1' ADP sing 68 n n C2' H2' ADP sing 69 n n O2' HO2' ADP sing 70 n n C1' N9 ADP sing 71 n n C1' H1' ADP sing 72 n n N9 C8 ADP sing 73 n y N9 C4 ADP sing 74 n y C8 N7 ADP doub 75 n y C8 H8 ADP sing 76 n n N7 C5 ADP sing 77 n y C5 C6 ADP sing 78 n y C5 C4 ADP doub 79 n y C6 N6 ADP sing 80 n n C6 N1 ADP doub 81 n y N6 HN61 ADP sing 82 n n N6 HN62 ADP sing 83 n n N1 C2 ADP sing 84 n y C2 N3 ADP doub 85 n y C2 H2 ADP sing 86 n n N3 C4 ADP sing 87 n y # _atom_sites.entry_id 3GUH _atom_sites.fract_transf_matrix[1][1] 0.007947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 486 485 ADP ADP . C 3 250 A 1 487 487 250 250 . D 4 ASO A 1 488 481 ASO DGM . E 5 PE3 A 1 489 482 PE3 PE3 . F 5 PE3 A 1 491 491 PE3 PE3 . G 6 ACT A 1 493 493 ACT ACT . H 6 ACT A 1 494 494 ACT ACT . I 7 HOH A 1 490 9 HOH HOH . I 7 HOH A 2 492 10 HOH HOH . I 7 HOH A 3 495 11 HOH HOH . I 7 HOH A 4 496 13 HOH HOH . I 7 HOH A 5 497 14 HOH HOH . I 7 HOH A 6 498 15 HOH HOH . I 7 HOH A 7 499 16 HOH HOH . I 7 HOH A 8 500 17 HOH HOH . I 7 HOH A 9 501 18 HOH HOH . I 7 HOH A 10 502 19 HOH HOH . I 7 HOH A 11 503 21 HOH HOH . I 7 HOH A 12 504 22 HOH HOH . I 7 HOH A 13 505 23 HOH HOH . I 7 HOH A 14 506 24 HOH HOH . I 7 HOH A 15 507 25 HOH HOH . I 7 HOH A 16 508 26 HOH HOH . I 7 HOH A 17 509 28 HOH HOH . I 7 HOH A 18 510 29 HOH HOH . I 7 HOH A 19 511 30 HOH HOH . I 7 HOH A 20 512 31 HOH HOH . I 7 HOH A 21 513 32 HOH HOH . I 7 HOH A 22 514 33 HOH HOH . I 7 HOH A 23 515 34 HOH HOH . I 7 HOH A 24 516 35 HOH HOH . I 7 HOH A 25 517 36 HOH HOH . I 7 HOH A 26 518 37 HOH HOH . I 7 HOH A 27 519 38 HOH HOH . I 7 HOH A 28 520 39 HOH HOH . I 7 HOH A 29 521 40 HOH HOH . I 7 HOH A 30 522 41 HOH HOH . I 7 HOH A 31 523 42 HOH HOH . I 7 HOH A 32 524 43 HOH HOH . I 7 HOH A 33 525 44 HOH HOH . I 7 HOH A 34 526 45 HOH HOH . I 7 HOH A 35 527 46 HOH HOH . I 7 HOH A 36 528 47 HOH HOH . I 7 HOH A 37 529 48 HOH HOH . I 7 HOH A 38 530 49 HOH HOH . I 7 HOH A 39 531 50 HOH HOH . I 7 HOH A 40 532 51 HOH HOH . I 7 HOH A 41 533 52 HOH HOH . I 7 HOH A 42 534 53 HOH HOH . I 7 HOH A 43 535 54 HOH HOH . I 7 HOH A 44 536 55 HOH HOH . I 7 HOH A 45 537 56 HOH HOH . I 7 HOH A 46 538 57 HOH HOH . I 7 HOH A 47 539 58 HOH HOH . I 7 HOH A 48 540 59 HOH HOH . I 7 HOH A 49 541 60 HOH HOH . I 7 HOH A 50 542 61 HOH HOH . I 7 HOH A 51 543 62 HOH HOH . I 7 HOH A 52 544 63 HOH HOH . I 7 HOH A 53 545 64 HOH HOH . I 7 HOH A 54 546 65 HOH HOH . I 7 HOH A 55 547 66 HOH HOH . I 7 HOH A 56 548 67 HOH HOH . I 7 HOH A 57 549 68 HOH HOH . I 7 HOH A 58 550 69 HOH HOH . I 7 HOH A 59 551 70 HOH HOH . I 7 HOH A 60 552 71 HOH HOH . I 7 HOH A 61 553 72 HOH HOH . I 7 HOH A 62 554 73 HOH HOH . I 7 HOH A 63 555 74 HOH HOH . I 7 HOH A 64 556 75 HOH HOH . I 7 HOH A 65 557 76 HOH HOH . I 7 HOH A 66 558 77 HOH HOH . I 7 HOH A 67 559 78 HOH HOH . I 7 HOH A 68 560 79 HOH HOH . I 7 HOH A 69 561 80 HOH HOH . I 7 HOH A 70 562 81 HOH HOH . I 7 HOH A 71 563 82 HOH HOH . I 7 HOH A 72 564 83 HOH HOH . I 7 HOH A 73 565 84 HOH HOH . I 7 HOH A 74 566 85 HOH HOH . I 7 HOH A 75 567 86 HOH HOH . I 7 HOH A 76 568 87 HOH HOH . I 7 HOH A 77 569 88 HOH HOH . I 7 HOH A 78 570 89 HOH HOH . I 7 HOH A 79 571 90 HOH HOH . I 7 HOH A 80 572 91 HOH HOH . I 7 HOH A 81 573 92 HOH HOH . I 7 HOH A 82 574 93 HOH HOH . I 7 HOH A 83 575 94 HOH HOH . I 7 HOH A 84 576 95 HOH HOH . I 7 HOH A 85 577 96 HOH HOH . I 7 HOH A 86 578 98 HOH HOH . I 7 HOH A 87 579 99 HOH HOH . I 7 HOH A 88 580 100 HOH HOH . I 7 HOH A 89 581 101 HOH HOH . I 7 HOH A 90 582 102 HOH HOH . I 7 HOH A 91 583 104 HOH HOH . I 7 HOH A 92 584 105 HOH HOH . I 7 HOH A 93 585 106 HOH HOH . I 7 HOH A 94 586 107 HOH HOH . I 7 HOH A 95 587 108 HOH HOH . I 7 HOH A 96 588 109 HOH HOH . I 7 HOH A 97 589 110 HOH HOH . I 7 HOH A 98 590 111 HOH HOH . I 7 HOH A 99 591 112 HOH HOH . I 7 HOH A 100 592 113 HOH HOH . I 7 HOH A 101 593 114 HOH HOH . I 7 HOH A 102 594 115 HOH HOH . I 7 HOH A 103 595 116 HOH HOH . I 7 HOH A 104 596 117 HOH HOH . I 7 HOH A 105 597 119 HOH HOH . I 7 HOH A 106 598 120 HOH HOH . I 7 HOH A 107 599 121 HOH HOH . I 7 HOH A 108 600 122 HOH HOH . I 7 HOH A 109 601 123 HOH HOH . I 7 HOH A 110 602 124 HOH HOH . I 7 HOH A 111 603 125 HOH HOH . I 7 HOH A 112 604 126 HOH HOH . I 7 HOH A 113 605 127 HOH HOH . I 7 HOH A 114 606 128 HOH HOH . I 7 HOH A 115 607 129 HOH HOH . I 7 HOH A 116 608 130 HOH HOH . I 7 HOH A 117 609 131 HOH HOH . I 7 HOH A 118 610 132 HOH HOH . I 7 HOH A 119 611 133 HOH HOH . I 7 HOH A 120 612 134 HOH HOH . I 7 HOH A 121 613 135 HOH HOH . I 7 HOH A 122 614 137 HOH HOH . I 7 HOH A 123 615 138 HOH HOH . I 7 HOH A 124 616 139 HOH HOH . I 7 HOH A 125 617 141 HOH HOH . I 7 HOH A 126 618 142 HOH HOH . I 7 HOH A 127 619 143 HOH HOH . I 7 HOH A 128 620 144 HOH HOH . I 7 HOH A 129 621 145 HOH HOH . I 7 HOH A 130 622 146 HOH HOH . I 7 HOH A 131 623 147 HOH HOH . I 7 HOH A 132 624 148 HOH HOH . I 7 HOH A 133 625 149 HOH HOH . I 7 HOH A 134 626 152 HOH HOH . I 7 HOH A 135 627 153 HOH HOH . I 7 HOH A 136 628 154 HOH HOH . I 7 HOH A 137 629 157 HOH HOH . I 7 HOH A 138 630 158 HOH HOH . I 7 HOH A 139 631 159 HOH HOH . I 7 HOH A 140 632 160 HOH HOH . I 7 HOH A 141 633 162 HOH HOH . I 7 HOH A 142 634 163 HOH HOH . I 7 HOH A 143 635 165 HOH HOH . I 7 HOH A 144 636 166 HOH HOH . I 7 HOH A 145 637 169 HOH HOH . I 7 HOH A 146 638 170 HOH HOH . I 7 HOH A 147 639 171 HOH HOH . I 7 HOH A 148 640 172 HOH HOH . I 7 HOH A 149 641 173 HOH HOH . I 7 HOH A 150 642 174 HOH HOH . I 7 HOH A 151 643 175 HOH HOH . I 7 HOH A 152 644 176 HOH HOH . I 7 HOH A 153 645 178 HOH HOH . I 7 HOH A 154 646 180 HOH HOH . I 7 HOH A 155 647 183 HOH HOH . I 7 HOH A 156 648 184 HOH HOH . I 7 HOH A 157 649 185 HOH HOH . I 7 HOH A 158 650 186 HOH HOH . I 7 HOH A 159 651 188 HOH HOH . I 7 HOH A 160 652 189 HOH HOH . I 7 HOH A 161 653 190 HOH HOH . I 7 HOH A 162 654 194 HOH HOH . I 7 HOH A 163 655 195 HOH HOH . I 7 HOH A 164 656 197 HOH HOH . I 7 HOH A 165 657 198 HOH HOH . I 7 HOH A 166 658 199 HOH HOH . I 7 HOH A 167 659 201 HOH HOH . I 7 HOH A 168 660 202 HOH HOH . I 7 HOH A 169 661 203 HOH HOH . I 7 HOH A 170 662 204 HOH HOH . I 7 HOH A 171 663 205 HOH HOH . I 7 HOH A 172 664 206 HOH HOH . I 7 HOH A 173 665 207 HOH HOH . I 7 HOH A 174 666 208 HOH HOH . I 7 HOH A 175 667 209 HOH HOH . I 7 HOH A 176 668 210 HOH HOH . I 7 HOH A 177 669 211 HOH HOH . I 7 HOH A 178 670 212 HOH HOH . I 7 HOH A 179 671 213 HOH HOH . I 7 HOH A 180 672 214 HOH HOH . I 7 HOH A 181 673 215 HOH HOH . I 7 HOH A 182 674 216 HOH HOH . I 7 HOH A 183 675 217 HOH HOH . I 7 HOH A 184 676 218 HOH HOH . I 7 HOH A 185 677 219 HOH HOH . I 7 HOH A 186 678 220 HOH HOH . I 7 HOH A 187 679 221 HOH HOH . I 7 HOH A 188 680 222 HOH HOH . I 7 HOH A 189 681 223 HOH HOH . I 7 HOH A 190 682 225 HOH HOH . I 7 HOH A 191 683 227 HOH HOH . I 7 HOH A 192 684 228 HOH HOH . I 7 HOH A 193 685 229 HOH HOH . I 7 HOH A 194 686 230 HOH HOH . I 7 HOH A 195 687 231 HOH HOH . I 7 HOH A 196 688 233 HOH HOH . I 7 HOH A 197 689 234 HOH HOH . I 7 HOH A 198 690 235 HOH HOH . I 7 HOH A 199 691 236 HOH HOH . I 7 HOH A 200 692 237 HOH HOH . I 7 HOH A 201 693 239 HOH HOH . I 7 HOH A 202 694 1 HOH HOH . I 7 HOH A 203 695 2 HOH HOH . I 7 HOH A 204 696 3 HOH HOH . I 7 HOH A 205 697 4 HOH HOH . I 7 HOH A 206 698 5 HOH HOH . I 7 HOH A 207 699 6 HOH HOH . I 7 HOH A 208 700 7 HOH HOH . I 7 HOH A 209 701 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 5.599 -41.079 -37.431 1 44.39 ? PB ADP 486 A 1 HETATM 2 O O1B ADP . . . B 2 4.987 -42.195 -38.296 1 42.07 ? O1B ADP 486 A 1 HETATM 3 O O2B ADP . . . B 2 4.907 -39.744 -37.218 1 38.25 ? O2B ADP 486 A 1 HETATM 4 O O3B ADP . . . B 2 7.129 -40.949 -37.931 1 41.8 ? O3B ADP 486 A 1 HETATM 5 P PA ADP . . . B 2 6.708 -41.616 -34.784 1 41.08 ? PA ADP 486 A 1 HETATM 6 O O1A ADP . . . B 2 8.018 -42.133 -35.296 1 38.64 ? O1A ADP 486 A 1 HETATM 7 O O2A ADP . . . B 2 6.096 -42.142 -33.464 1 41.64 ? O2A ADP 486 A 1 HETATM 8 O O3A ADP . . . B 2 5.607 -41.769 -35.953 1 43.9 ? O3A ADP 486 A 1 HETATM 9 O O5' ADP . . . B 2 6.892 -40.014 -34.73 1 38.94 ? O5' ADP 486 A 1 HETATM 10 C C5' ADP . . . B 2 5.897 -39.132 -34.226 1 37.65 ? C5' ADP 486 A 1 HETATM 11 C C4' ADP . . . B 2 6.635 -37.931 -33.661 1 37.1 ? C4' ADP 486 A 1 HETATM 12 O O4' ADP . . . B 2 5.864 -36.779 -33.947 1 37.72 ? O4' ADP 486 A 1 HETATM 13 C C3' ADP . . . B 2 6.716 -38 -32.16 1 37.81 ? C3' ADP 486 A 1 HETATM 14 O O3' ADP . . . B 2 7.797 -37.165 -31.735 1 34.38 ? O3' ADP 486 A 1 HETATM 15 C C2' ADP . . . B 2 5.38 -37.42 -31.741 1 37.81 ? C2' ADP 486 A 1 HETATM 16 O O2' ADP . . . B 2 5.447 -36.819 -30.46 1 38.31 ? O2' ADP 486 A 1 HETATM 17 C C1' ADP . . . B 2 5.23 -36.312 -32.767 1 40.43 ? C1' ADP 486 A 1 HETATM 18 N N9 ADP . . . B 2 3.815 -35.984 -33.009 1 42.21 ? N9 ADP 486 A 1 HETATM 19 C C8 ADP . . . B 2 2.926 -36.695 -33.723 1 42.34 ? C8 ADP 486 A 1 HETATM 20 N N7 ADP . . . B 2 1.744 -36.036 -33.665 1 44.37 ? N7 ADP 486 A 1 HETATM 21 C C5 ADP . . . B 2 1.913 -34.914 -32.913 1 45.85 ? C5 ADP 486 A 1 HETATM 22 C C6 ADP . . . B 2 1.087 -33.854 -32.516 1 46.34 ? C6 ADP 486 A 1 HETATM 23 N N6 ADP . . . B 2 -0.217 -33.849 -32.905 1 48.54 ? N6 ADP 486 A 1 HETATM 24 N N1 ADP . . . B 2 1.579 -32.847 -31.749 1 43.76 ? N1 ADP 486 A 1 HETATM 25 C C2 ADP . . . B 2 2.853 -32.868 -31.34 1 43.33 ? C2 ADP 486 A 1 HETATM 26 N N3 ADP . . . B 2 3.673 -33.865 -31.699 1 43.43 ? N3 ADP 486 A 1 HETATM 27 C C4 ADP . . . B 2 3.231 -34.891 -32.491 1 44.39 ? C4 ADP 486 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #