data_3GUJ # _model_server_result.job_id tFXGbC5AWyg7YwsqKtg18Q _model_server_result.datetime_utc '2024-11-13 05:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3guj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3GUJ # _exptl.entry_id 3GUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GUJ _cell.length_a 48.814 _cell.length_b 48.814 _cell.length_c 128.369 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A C ARG 96 A ARG 96 1_555 A N CME 97 A CME 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CME 97 A CME 97 1_555 A N ALA 98 A ALA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C6 H6' _chem_comp.formula_weight 78.112 _chem_comp.id BNZ _chem_comp.mon_nstd_flag . _chem_comp.name BENZENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNZ doub 79 n y C1 C6 BNZ sing 80 n y C1 H1 BNZ sing 81 n n C2 C3 BNZ sing 82 n y C2 H2 BNZ sing 83 n n C3 C4 BNZ doub 84 n y C3 H3 BNZ sing 85 n n C4 C5 BNZ sing 86 n y C4 H4 BNZ sing 87 n n C5 C6 BNZ doub 88 n y C5 H5 BNZ sing 89 n n C6 H6 BNZ sing 90 n n # _atom_sites.entry_id 3GUJ _atom_sites.fract_transf_matrix[1][1] 0.020486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNZ A 1 501 501 BNZ BNZ . C 3 BME A 1 165 1 BME BME . D 4 CO3 A 1 166 2 CO3 CO3 . E 5 EPE A 1 167 3 EPE EPE . F 6 SO4 A 1 168 4 SO4 SO4 . G 7 HOH A 1 169 169 HOH HOH . G 7 HOH A 2 170 170 HOH HOH . G 7 HOH A 3 171 171 HOH HOH . G 7 HOH A 4 172 172 HOH HOH . G 7 HOH A 5 173 173 HOH HOH . G 7 HOH A 6 174 174 HOH HOH . G 7 HOH A 7 175 175 HOH HOH . G 7 HOH A 8 176 176 HOH HOH . G 7 HOH A 9 601 601 HOH HOH . G 7 HOH A 10 602 602 HOH HOH . G 7 HOH A 11 603 1 HOH HOH . G 7 HOH A 12 604 2 HOH HOH . G 7 HOH A 13 605 3 HOH HOH . G 7 HOH A 14 606 4 HOH HOH . G 7 HOH A 15 607 5 HOH HOH . G 7 HOH A 16 608 6 HOH HOH . G 7 HOH A 17 609 7 HOH HOH . G 7 HOH A 18 610 8 HOH HOH . G 7 HOH A 19 611 9 HOH HOH . G 7 HOH A 20 612 10 HOH HOH . G 7 HOH A 21 613 11 HOH HOH . G 7 HOH A 22 614 12 HOH HOH . G 7 HOH A 23 615 13 HOH HOH . G 7 HOH A 24 616 14 HOH HOH . G 7 HOH A 25 617 15 HOH HOH . G 7 HOH A 26 618 16 HOH HOH . G 7 HOH A 27 619 17 HOH HOH . G 7 HOH A 28 620 18 HOH HOH . G 7 HOH A 29 621 19 HOH HOH . G 7 HOH A 30 622 20 HOH HOH . G 7 HOH A 31 623 21 HOH HOH . G 7 HOH A 32 624 22 HOH HOH . G 7 HOH A 33 625 23 HOH HOH . G 7 HOH A 34 626 24 HOH HOH . G 7 HOH A 35 627 25 HOH HOH . G 7 HOH A 36 628 26 HOH HOH . G 7 HOH A 37 629 27 HOH HOH . G 7 HOH A 38 630 28 HOH HOH . G 7 HOH A 39 631 29 HOH HOH . G 7 HOH A 40 632 30 HOH HOH . G 7 HOH A 41 633 31 HOH HOH . G 7 HOH A 42 634 32 HOH HOH . G 7 HOH A 43 635 33 HOH HOH . G 7 HOH A 44 636 34 HOH HOH . G 7 HOH A 45 637 35 HOH HOH . G 7 HOH A 46 638 36 HOH HOH . G 7 HOH A 47 639 37 HOH HOH . G 7 HOH A 48 640 38 HOH HOH . G 7 HOH A 49 641 39 HOH HOH . G 7 HOH A 50 642 40 HOH HOH . G 7 HOH A 51 643 41 HOH HOH . G 7 HOH A 52 644 42 HOH HOH . G 7 HOH A 53 645 43 HOH HOH . G 7 HOH A 54 646 44 HOH HOH . G 7 HOH A 55 647 45 HOH HOH . G 7 HOH A 56 648 46 HOH HOH . G 7 HOH A 57 649 47 HOH HOH . G 7 HOH A 58 650 48 HOH HOH . G 7 HOH A 59 651 49 HOH HOH . G 7 HOH A 60 652 50 HOH HOH . G 7 HOH A 61 653 51 HOH HOH . G 7 HOH A 62 654 52 HOH HOH . G 7 HOH A 63 655 53 HOH HOH . G 7 HOH A 64 656 54 HOH HOH . G 7 HOH A 65 657 55 HOH HOH . G 7 HOH A 66 658 56 HOH HOH . G 7 HOH A 67 659 57 HOH HOH . G 7 HOH A 68 660 58 HOH HOH . G 7 HOH A 69 661 59 HOH HOH . G 7 HOH A 70 662 60 HOH HOH . G 7 HOH A 71 663 61 HOH HOH . G 7 HOH A 72 664 62 HOH HOH . G 7 HOH A 73 665 63 HOH HOH . G 7 HOH A 74 666 64 HOH HOH . G 7 HOH A 75 667 65 HOH HOH . G 7 HOH A 76 668 66 HOH HOH . G 7 HOH A 77 669 67 HOH HOH . G 7 HOH A 78 670 68 HOH HOH . G 7 HOH A 79 671 69 HOH HOH . G 7 HOH A 80 672 70 HOH HOH . G 7 HOH A 81 673 71 HOH HOH . G 7 HOH A 82 674 72 HOH HOH . G 7 HOH A 83 675 73 HOH HOH . G 7 HOH A 84 676 74 HOH HOH . G 7 HOH A 85 677 75 HOH HOH . G 7 HOH A 86 678 76 HOH HOH . G 7 HOH A 87 679 77 HOH HOH . G 7 HOH A 88 680 78 HOH HOH . G 7 HOH A 89 681 79 HOH HOH . G 7 HOH A 90 682 80 HOH HOH . G 7 HOH A 91 683 81 HOH HOH . G 7 HOH A 92 684 82 HOH HOH . G 7 HOH A 93 685 83 HOH HOH . G 7 HOH A 94 686 84 HOH HOH . G 7 HOH A 95 687 85 HOH HOH . G 7 HOH A 96 688 86 HOH HOH . G 7 HOH A 97 689 87 HOH HOH . G 7 HOH A 98 690 88 HOH HOH . G 7 HOH A 99 691 89 HOH HOH . G 7 HOH A 100 692 90 HOH HOH . G 7 HOH A 101 693 91 HOH HOH . G 7 HOH A 102 694 92 HOH HOH . G 7 HOH A 103 695 93 HOH HOH . G 7 HOH A 104 696 94 HOH HOH . G 7 HOH A 105 697 95 HOH HOH . G 7 HOH A 106 698 96 HOH HOH . G 7 HOH A 107 699 97 HOH HOH . G 7 HOH A 108 700 98 HOH HOH . G 7 HOH A 109 701 99 HOH HOH . G 7 HOH A 110 702 100 HOH HOH . G 7 HOH A 111 703 101 HOH HOH . G 7 HOH A 112 704 102 HOH HOH . G 7 HOH A 113 705 103 HOH HOH . G 7 HOH A 114 706 104 HOH HOH . G 7 HOH A 115 707 105 HOH HOH . G 7 HOH A 116 708 106 HOH HOH . G 7 HOH A 117 709 107 HOH HOH . G 7 HOH A 118 710 108 HOH HOH . G 7 HOH A 119 711 109 HOH HOH . G 7 HOH A 120 712 110 HOH HOH . G 7 HOH A 121 713 111 HOH HOH . G 7 HOH A 122 714 112 HOH HOH . G 7 HOH A 123 715 113 HOH HOH . G 7 HOH A 124 716 114 HOH HOH . G 7 HOH A 125 717 115 HOH HOH . G 7 HOH A 126 718 116 HOH HOH . G 7 HOH A 127 719 117 HOH HOH . G 7 HOH A 128 720 118 HOH HOH . G 7 HOH A 129 721 119 HOH HOH . G 7 HOH A 130 722 120 HOH HOH . G 7 HOH A 131 723 121 HOH HOH . G 7 HOH A 132 724 122 HOH HOH . G 7 HOH A 133 725 123 HOH HOH . G 7 HOH A 134 726 124 HOH HOH . G 7 HOH A 135 727 125 HOH HOH . G 7 HOH A 136 728 126 HOH HOH . G 7 HOH A 137 729 127 HOH HOH . G 7 HOH A 138 730 128 HOH HOH . G 7 HOH A 139 731 129 HOH HOH . G 7 HOH A 140 732 130 HOH HOH . G 7 HOH A 141 733 131 HOH HOH . G 7 HOH A 142 734 132 HOH HOH . G 7 HOH A 143 735 133 HOH HOH . G 7 HOH A 144 736 134 HOH HOH . G 7 HOH A 145 737 135 HOH HOH . G 7 HOH A 146 738 136 HOH HOH . G 7 HOH A 147 739 137 HOH HOH . G 7 HOH A 148 740 138 HOH HOH . G 7 HOH A 149 741 139 HOH HOH . G 7 HOH A 150 742 140 HOH HOH . G 7 HOH A 151 743 141 HOH HOH . G 7 HOH A 152 744 142 HOH HOH . G 7 HOH A 153 745 143 HOH HOH . G 7 HOH A 154 746 144 HOH HOH . G 7 HOH A 155 747 145 HOH HOH . G 7 HOH A 156 748 146 HOH HOH . G 7 HOH A 157 749 147 HOH HOH . G 7 HOH A 158 750 148 HOH HOH . G 7 HOH A 159 751 149 HOH HOH . G 7 HOH A 160 752 150 HOH HOH . G 7 HOH A 161 753 151 HOH HOH . G 7 HOH A 162 754 152 HOH HOH . G 7 HOH A 163 755 153 HOH HOH . G 7 HOH A 164 756 154 HOH HOH . G 7 HOH A 165 757 155 HOH HOH . G 7 HOH A 166 758 156 HOH HOH . G 7 HOH A 167 759 157 HOH HOH . G 7 HOH A 168 760 158 HOH HOH . G 7 HOH A 169 761 159 HOH HOH . G 7 HOH A 170 762 160 HOH HOH . G 7 HOH A 171 763 161 HOH HOH . G 7 HOH A 172 764 162 HOH HOH . G 7 HOH A 173 765 163 HOH HOH . G 7 HOH A 174 766 164 HOH HOH . G 7 HOH A 175 767 165 HOH HOH . G 7 HOH A 176 768 166 HOH HOH . G 7 HOH A 177 769 167 HOH HOH . G 7 HOH A 178 770 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNZ . . . B 2 21.572 -11.022 56.648 1 24.98 ? C1 BNZ 501 A 1 HETATM 2 C C2 BNZ . . . B 2 22.438 -12.008 56.17 1 24.73 ? C2 BNZ 501 A 1 HETATM 3 C C3 BNZ . . . B 2 23.666 -12.221 56.802 1 24.6 ? C3 BNZ 501 A 1 HETATM 4 C C4 BNZ . . . B 2 24.04 -11.453 57.898 1 22.6 ? C4 BNZ 501 A 1 HETATM 5 C C5 BNZ . . . B 2 23.178 -10.468 58.379 1 25.5 ? C5 BNZ 501 A 1 HETATM 6 C C6 BNZ . . . B 2 21.947 -10.253 57.751 1 25.78 ? C6 BNZ 501 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #