data_3GUM
#
_model_server_result.job_id            Hx0dd8lNRVKcVIVG0DjugQ 
_model_server_result.datetime_utc      '2024-12-01 18:17:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gum 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3GUM 
#
_exptl.entry_id    3GUM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.165 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PARA-XYLENE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GUM 
_cell.length_a            49.709 
_cell.length_b            49.709 
_cell.length_c            129.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GUM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 B SG CYS 21 B CYS 21 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A C ARG 96 A ARG 96 1_555 A N CME 97 A CME 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CME 97 A CME 97 1_555 A N ALA 98 A ALA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 B C ARG 96 B ARG 96 1_555 B N CME 97 B CME 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 B C CME 97 B CME 97 1_555 B N ALA 98 B ALA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C8 H10' 
_chem_comp.formula_weight    106.165 
_chem_comp.id                PXY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PARA-XYLENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PXY doub 304 n y 
C1 C6 PXY sing 305 n y 
C1 C1' PXY sing 306 n n 
C2 C3 PXY sing 307 n y 
C2 H2 PXY sing 308 n n 
C3 C4 PXY doub 309 n y 
C3 H3 PXY sing 310 n n 
C4 C5 PXY sing 311 n y 
C4 C4' PXY sing 312 n n 
C5 C6 PXY doub 313 n y 
C5 H5 PXY sing 314 n n 
C6 H6 PXY sing 315 n n 
C1' "H1'1" PXY sing 316 n n 
C1' "H1'2" PXY sing 317 n n 
C1' "H1'3" PXY sing 318 n n 
C4' "H4'1" PXY sing 319 n n 
C4' "H4'2" PXY sing 320 n n 
C4' "H4'3" PXY sing 321 n n 
#
_atom_sites.entry_id                     3GUM 
_atom_sites.fract_transf_matrix[1][1]    0.020117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00771 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PXY A 1 501 501 PXY PXY . 
D 3 CL A 1 165 165 CL CL . 
E 4 ACT A 1 166 166 ACT ACT . 
F 2 PXY B 1 501 501 PXY PXY . 
G 5 CA B 1 165 165 CA CA . 
H 3 CL B 1 166 166 CL CL . 
I 3 CL B 1 167 167 CL CL . 
J 4 ACT B 1 168 168 ACT ACT . 
K 6 HOH A 1 167 167 HOH HOH . 
K 6 HOH A 2 168 171 HOH HOH . 
K 6 HOH A 3 169 169 HOH HOH . 
K 6 HOH A 4 170 170 HOH HOH . 
K 6 HOH A 5 171 171 HOH HOH . 
K 6 HOH A 6 172 172 HOH HOH . 
K 6 HOH A 7 173 173 HOH HOH . 
K 6 HOH A 8 174 173 HOH HOH . 
K 6 HOH A 9 175 175 HOH HOH . 
K 6 HOH A 10 176 176 HOH HOH . 
K 6 HOH A 11 177 177 HOH HOH . 
K 6 HOH A 12 178 180 HOH HOH . 
K 6 HOH A 13 179 179 HOH HOH . 
K 6 HOH A 14 180 180 HOH HOH . 
K 6 HOH A 15 181 181 HOH HOH . 
K 6 HOH A 16 182 182 HOH HOH . 
K 6 HOH A 17 183 181 HOH HOH . 
K 6 HOH A 18 184 184 HOH HOH . 
K 6 HOH A 19 185 185 HOH HOH . 
K 6 HOH A 20 186 182 HOH HOH . 
K 6 HOH A 21 187 184 HOH HOH . 
K 6 HOH A 22 188 188 HOH HOH . 
K 6 HOH A 23 189 189 HOH HOH . 
K 6 HOH A 24 191 191 HOH HOH . 
K 6 HOH A 25 192 192 HOH HOH . 
K 6 HOH A 26 194 194 HOH HOH . 
K 6 HOH A 27 195 195 HOH HOH . 
K 6 HOH A 28 196 196 HOH HOH . 
K 6 HOH A 29 197 197 HOH HOH . 
K 6 HOH A 30 198 198 HOH HOH . 
K 6 HOH A 31 202 202 HOH HOH . 
K 6 HOH A 32 203 203 HOH HOH . 
K 6 HOH A 33 207 207 HOH HOH . 
K 6 HOH A 34 209 209 HOH HOH . 
K 6 HOH A 35 210 210 HOH HOH . 
K 6 HOH A 36 211 211 HOH HOH . 
K 6 HOH A 37 212 212 HOH HOH . 
K 6 HOH A 38 215 215 HOH HOH . 
L 6 HOH B 1 169 169 HOH HOH . 
L 6 HOH B 2 170 170 HOH HOH . 
L 6 HOH B 3 171 168 HOH HOH . 
L 6 HOH B 4 172 172 HOH HOH . 
L 6 HOH B 5 173 174 HOH HOH . 
L 6 HOH B 6 174 174 HOH HOH . 
L 6 HOH B 7 175 175 HOH HOH . 
L 6 HOH B 8 176 176 HOH HOH . 
L 6 HOH B 9 177 177 HOH HOH . 
L 6 HOH B 10 178 178 HOH HOH . 
L 6 HOH B 11 179 179 HOH HOH . 
L 6 HOH B 12 180 178 HOH HOH . 
L 6 HOH B 13 181 183 HOH HOH . 
L 6 HOH B 14 182 186 HOH HOH . 
L 6 HOH B 15 183 183 HOH HOH . 
L 6 HOH B 16 185 185 HOH HOH . 
L 6 HOH B 17 186 186 HOH HOH . 
L 6 HOH B 18 187 187 HOH HOH . 
L 6 HOH B 19 190 190 HOH HOH . 
L 6 HOH B 20 193 193 HOH HOH . 
L 6 HOH B 21 199 199 HOH HOH . 
L 6 HOH B 22 200 200 HOH HOH . 
L 6 HOH B 23 201 201 HOH HOH . 
L 6 HOH B 24 204 204 HOH HOH . 
L 6 HOH B 25 205 205 HOH HOH . 
L 6 HOH B 26 206 206 HOH HOH . 
L 6 HOH B 27 208 208 HOH HOH . 
L 6 HOH B 28 213 213 HOH HOH . 
L 6 HOH B 29 214 214 HOH HOH . 
L 6 HOH B 30 216 216 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PXY . . . C 2 7.651 -1.228 -2.484 1 42.5 ? C1 PXY 501 A 1 
HETATM 2 C C2 PXY . . . C 2 7.413 0.11 -2.124 1 42.03 ? C2 PXY 501 A 1 
HETATM 3 C C3 PXY . . . C 2 8.5 0.988 -1.99 1 38.28 ? C3 PXY 501 A 1 
HETATM 4 C C4 PXY . . . C 2 9.812 0.584 -2.281 1 40.63 ? C4 PXY 501 A 1 
HETATM 5 C C5 PXY . . . C 2 10.037 -0.726 -2.657 1 42.62 ? C5 PXY 501 A 1 
HETATM 6 C C6 PXY . . . C 2 8.966 -1.637 -2.747 1 43.11 ? C6 PXY 501 A 1 
HETATM 7 C C1' PXY . . . C 2 6.525 -2.246 -2.575 1 41.44 ? C1' PXY 501 A 1 
HETATM 8 C C4' PXY . . . C 2 10.999 1.534 -2.175 1 38.51 ? C4' PXY 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           8 
#