data_3GUR # _model_server_result.job_id E9FeyOycf8zNJvpRdCIU4w _model_server_result.datetime_utc '2024-11-22 23:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":218}' # _entry.id 3GUR # _exptl.entry_id 3GUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 604.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-gamma-glutamyl-S-{(4R)-4-[(6-hydroxyhexyl)sulfanyl]-7-nitro-4,5-dihydro-2,1,3-benzoxadiazol-4-yl}-L-cysteinylglycine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GUR _cell.length_a 56.75 _cell.length_b 78.016 _cell.length_c 219.362 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C22 H32 N6 O10 S2' _chem_comp.formula_weight 604.654 _chem_comp.id BYG _chem_comp.mon_nstd_flag . _chem_comp.name L-gamma-glutamyl-S-{(4R)-4-[(6-hydroxyhexyl)sulfanyl]-7-nitro-4,5-dihydro-2,1,3-benzoxadiazol-4-yl}-L-cysteinylglycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 BYG sing 70 n n C1 O12 BYG doub 71 n n C1 CA1 BYG sing 72 n n N1 CA1 BYG sing 73 n n S1 CE6 BYG sing 74 n n S1 CF4 BYG sing 75 n n C2 O2 BYG doub 76 n n C2 N3 BYG sing 77 n n C2 CA2 BYG sing 78 n n N2 CA2 BYG sing 79 n n N2 CD1 BYG sing 80 n n C3 O31 BYG doub 81 n n C3 O32 BYG sing 82 n n C3 CA3 BYG sing 83 n n N3 CA3 BYG sing 84 n n CI CL BYG sing 85 n y CI NA1 BYG doub 86 n y CI CF7 BYG sing 87 n n CL NA3 BYG doub 88 n y CL CF4 BYG sing 89 n n CA1 CB1 BYG sing 90 n n NA1 OA2 BYG sing 91 n y CA2 CB2 BYG sing 92 n n OA2 NA3 BYG sing 93 n y OA3 NA4 BYG doub 94 n n NA4 OA4 BYG sing 95 n n NA4 CF7 BYG sing 96 n n OA5 CE1 BYG sing 97 n n CB1 CG1 BYG sing 98 n n CB2 SG2 BYG sing 99 n n CD1 OE1 BYG doub 100 n n CD1 CG1 BYG sing 101 n n CE1 CE2 BYG sing 102 n n CE2 CE3 BYG sing 103 n n CE3 CE4 BYG sing 104 n n CE4 CE5 BYG sing 105 n n CE5 CE6 BYG sing 106 n n CF4 CF5 BYG sing 107 n n CF4 SG2 BYG sing 108 n n CF5 CF6 BYG sing 109 n n CF6 CF7 BYG doub 110 n n N1 HN1 BYG sing 111 n n N1 HN1A BYG sing 112 n n N2 HN2 BYG sing 113 n n N3 HN3 BYG sing 114 n n CA1 HA1 BYG sing 115 n n CA2 HA2 BYG sing 116 n n CA3 HA3 BYG sing 117 n n CA3 HA3A BYG sing 118 n n OA5 HOA5 BYG sing 119 n n CB1 HB1 BYG sing 120 n n CB1 HB1A BYG sing 121 n n CB2 HB2 BYG sing 122 n n CB2 HB2A BYG sing 123 n n CE1 HE1 BYG sing 124 n n CE1 HE1A BYG sing 125 n n CE2 HE2 BYG sing 126 n n CE2 HE2A BYG sing 127 n n CE3 HE3 BYG sing 128 n n CE3 HE3A BYG sing 129 n n CE4 HE4 BYG sing 130 n n CE4 HE4A BYG sing 131 n n CE5 HE5 BYG sing 132 n n CE5 HE5A BYG sing 133 n n CE6 HE6 BYG sing 134 n n CE6 HE6A BYG sing 135 n n CF5 HF5 BYG sing 136 n n CF5 HF5A BYG sing 137 n n CF6 HF6 BYG sing 138 n n CG1 HG1 BYG sing 139 n n CG1 HG1A BYG sing 140 n n O11 HO11 BYG sing 141 n n O32 HO32 BYG sing 142 n n # _atom_sites.entry_id 3GUR _atom_sites.fract_transf_matrix[1][1] 0.017621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BYG A 1 218 218 BYG BYG . F 3 GSH B 1 218 218 GSH GTT . G 2 BYG C 1 218 218 BYG BYG . H 4 EDO C 1 219 219 EDO EDO . I 3 GSH D 1 218 218 GSH GTT . J 5 HOH A 1 219 219 HOH HOH . J 5 HOH A 2 220 220 HOH HOH . J 5 HOH A 3 221 221 HOH HOH . J 5 HOH A 4 222 222 HOH HOH . J 5 HOH A 5 223 223 HOH HOH . J 5 HOH A 6 224 224 HOH HOH . J 5 HOH A 7 225 225 HOH HOH . J 5 HOH A 8 226 226 HOH HOH . J 5 HOH A 9 227 227 HOH HOH . J 5 HOH A 10 228 228 HOH HOH . J 5 HOH A 11 229 229 HOH HOH . J 5 HOH A 12 230 230 HOH HOH . J 5 HOH A 13 231 231 HOH HOH . J 5 HOH A 14 232 232 HOH HOH . J 5 HOH A 15 233 233 HOH HOH . J 5 HOH A 16 234 234 HOH HOH . J 5 HOH A 17 235 235 HOH HOH . J 5 HOH A 18 236 236 HOH HOH . J 5 HOH A 19 237 237 HOH HOH . J 5 HOH A 20 238 238 HOH HOH . J 5 HOH A 21 239 239 HOH HOH . J 5 HOH A 22 240 240 HOH HOH . J 5 HOH A 23 241 241 HOH HOH . J 5 HOH A 24 242 242 HOH HOH . J 5 HOH A 25 243 243 HOH HOH . J 5 HOH A 26 244 244 HOH HOH . J 5 HOH A 27 245 245 HOH HOH . J 5 HOH A 28 246 246 HOH HOH . J 5 HOH A 29 247 247 HOH HOH . J 5 HOH A 30 248 248 HOH HOH . J 5 HOH A 31 249 249 HOH HOH . J 5 HOH A 32 250 250 HOH HOH . J 5 HOH A 33 251 251 HOH HOH . J 5 HOH A 34 252 252 HOH HOH . J 5 HOH A 35 253 253 HOH HOH . J 5 HOH A 36 254 254 HOH HOH . J 5 HOH A 37 255 255 HOH HOH . J 5 HOH A 38 256 256 HOH HOH . J 5 HOH A 39 257 257 HOH HOH . J 5 HOH A 40 258 258 HOH HOH . J 5 HOH A 41 259 259 HOH HOH . J 5 HOH A 42 260 260 HOH HOH . J 5 HOH A 43 261 261 HOH HOH . J 5 HOH A 44 262 262 HOH HOH . J 5 HOH A 45 263 263 HOH HOH . J 5 HOH A 46 264 264 HOH HOH . J 5 HOH A 47 265 265 HOH HOH . J 5 HOH A 48 266 266 HOH HOH . J 5 HOH A 49 267 267 HOH HOH . K 5 HOH B 1 219 219 HOH HOH . K 5 HOH B 2 220 220 HOH HOH . K 5 HOH B 3 221 221 HOH HOH . K 5 HOH B 4 222 222 HOH HOH . K 5 HOH B 5 223 223 HOH HOH . K 5 HOH B 6 224 224 HOH HOH . K 5 HOH B 7 225 225 HOH HOH . K 5 HOH B 8 226 226 HOH HOH . K 5 HOH B 9 227 227 HOH HOH . K 5 HOH B 10 228 228 HOH HOH . K 5 HOH B 11 229 229 HOH HOH . K 5 HOH B 12 230 230 HOH HOH . K 5 HOH B 13 231 231 HOH HOH . K 5 HOH B 14 232 232 HOH HOH . K 5 HOH B 15 233 233 HOH HOH . K 5 HOH B 16 234 234 HOH HOH . K 5 HOH B 17 235 235 HOH HOH . K 5 HOH B 18 236 236 HOH HOH . K 5 HOH B 19 237 237 HOH HOH . K 5 HOH B 20 238 238 HOH HOH . K 5 HOH B 21 239 239 HOH HOH . K 5 HOH B 22 240 240 HOH HOH . K 5 HOH B 23 241 241 HOH HOH . K 5 HOH B 24 242 242 HOH HOH . K 5 HOH B 25 243 243 HOH HOH . K 5 HOH B 26 244 244 HOH HOH . K 5 HOH B 27 245 245 HOH HOH . K 5 HOH B 28 246 246 HOH HOH . K 5 HOH B 29 247 247 HOH HOH . K 5 HOH B 30 248 248 HOH HOH . K 5 HOH B 31 249 249 HOH HOH . K 5 HOH B 32 250 250 HOH HOH . K 5 HOH B 33 251 251 HOH HOH . K 5 HOH B 34 252 252 HOH HOH . K 5 HOH B 35 253 253 HOH HOH . K 5 HOH B 36 254 254 HOH HOH . K 5 HOH B 37 255 255 HOH HOH . K 5 HOH B 38 256 256 HOH HOH . K 5 HOH B 39 257 257 HOH HOH . K 5 HOH B 40 258 258 HOH HOH . K 5 HOH B 41 259 259 HOH HOH . K 5 HOH B 42 260 260 HOH HOH . K 5 HOH B 43 261 261 HOH HOH . K 5 HOH B 44 262 262 HOH HOH . K 5 HOH B 45 263 263 HOH HOH . L 5 HOH C 1 220 220 HOH HOH . L 5 HOH C 2 221 221 HOH HOH . L 5 HOH C 3 222 222 HOH HOH . L 5 HOH C 4 223 223 HOH HOH . L 5 HOH C 5 224 224 HOH HOH . L 5 HOH C 6 225 225 HOH HOH . L 5 HOH C 7 226 226 HOH HOH . L 5 HOH C 8 227 227 HOH HOH . L 5 HOH C 9 228 228 HOH HOH . L 5 HOH C 10 229 229 HOH HOH . L 5 HOH C 11 230 230 HOH HOH . L 5 HOH C 12 231 231 HOH HOH . L 5 HOH C 13 232 232 HOH HOH . L 5 HOH C 14 233 233 HOH HOH . L 5 HOH C 15 234 234 HOH HOH . L 5 HOH C 16 235 235 HOH HOH . L 5 HOH C 17 236 236 HOH HOH . L 5 HOH C 18 237 237 HOH HOH . L 5 HOH C 19 238 238 HOH HOH . L 5 HOH C 20 239 239 HOH HOH . L 5 HOH C 21 240 240 HOH HOH . L 5 HOH C 22 241 241 HOH HOH . L 5 HOH C 23 242 242 HOH HOH . L 5 HOH C 24 243 243 HOH HOH . L 5 HOH C 25 244 244 HOH HOH . L 5 HOH C 26 245 245 HOH HOH . L 5 HOH C 27 246 246 HOH HOH . L 5 HOH C 28 247 247 HOH HOH . L 5 HOH C 29 248 248 HOH HOH . L 5 HOH C 30 249 249 HOH HOH . L 5 HOH C 31 250 250 HOH HOH . L 5 HOH C 32 251 251 HOH HOH . L 5 HOH C 33 252 252 HOH HOH . L 5 HOH C 34 253 253 HOH HOH . L 5 HOH C 35 254 254 HOH HOH . L 5 HOH C 36 255 255 HOH HOH . L 5 HOH C 37 256 256 HOH HOH . L 5 HOH C 38 257 257 HOH HOH . L 5 HOH C 39 258 258 HOH HOH . M 5 HOH D 1 219 219 HOH HOH . M 5 HOH D 2 220 220 HOH HOH . M 5 HOH D 3 221 221 HOH HOH . M 5 HOH D 4 222 222 HOH HOH . M 5 HOH D 5 223 223 HOH HOH . M 5 HOH D 6 224 224 HOH HOH . M 5 HOH D 7 225 225 HOH HOH . M 5 HOH D 8 226 226 HOH HOH . M 5 HOH D 9 227 227 HOH HOH . M 5 HOH D 10 228 228 HOH HOH . M 5 HOH D 11 229 229 HOH HOH . M 5 HOH D 12 230 230 HOH HOH . M 5 HOH D 13 231 231 HOH HOH . M 5 HOH D 14 232 232 HOH HOH . M 5 HOH D 15 233 233 HOH HOH . M 5 HOH D 16 234 234 HOH HOH . M 5 HOH D 17 235 235 HOH HOH . M 5 HOH D 18 236 236 HOH HOH . M 5 HOH D 19 237 237 HOH HOH . M 5 HOH D 20 238 238 HOH HOH . M 5 HOH D 21 239 239 HOH HOH . M 5 HOH D 22 240 240 HOH HOH . M 5 HOH D 23 241 241 HOH HOH . M 5 HOH D 24 242 242 HOH HOH . M 5 HOH D 25 243 243 HOH HOH . M 5 HOH D 26 244 244 HOH HOH . M 5 HOH D 27 245 245 HOH HOH . M 5 HOH D 28 246 246 HOH HOH . M 5 HOH D 29 247 247 HOH HOH . M 5 HOH D 30 248 248 HOH HOH . M 5 HOH D 31 249 249 HOH HOH . M 5 HOH D 32 250 250 HOH HOH . M 5 HOH D 33 251 251 HOH HOH . M 5 HOH D 34 252 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BYG . . . E 2 12.048 -2.604 11.002 1 20.14 ? C1 BYG 218 A 1 HETATM 2 N N1 BYG . . . E 2 11.736 -2.209 13.358 1 20.6 ? N1 BYG 218 A 1 HETATM 3 S S1 BYG . . . E 2 5.123 -8.628 13.71 0.5 30.64 ? S1 BYG 218 A 1 HETATM 4 C C2 BYG . . . E 2 10.464 -9.626 13.306 1 28.98 ? C2 BYG 218 A 1 HETATM 5 N N2 BYG . . . E 2 10.767 -7.226 12.983 1 26.54 ? N2 BYG 218 A 1 HETATM 6 O O2 BYG . . . E 2 9.659 -10.775 13.172 1 28.1 ? O2 BYG 218 A 1 HETATM 7 C C3 BYG . . . E 2 13.25 -11.447 14.217 1 29.01 ? C3 BYG 218 A 1 HETATM 8 N N3 BYG . . . E 2 11.792 -9.674 13.365 1 27.83 ? N3 BYG 218 A 1 HETATM 9 C CI BYG . . . E 2 4.747 -4.962 14.587 0.5 27.08 ? CI BYG 218 A 1 HETATM 10 C CL BYG . . . E 2 5.494 -6.249 14.596 0.5 27.66 ? CL BYG 218 A 1 HETATM 11 O O11 BYG . . . E 2 11.561 -1.482 10.745 1 18.94 ? O11 BYG 218 A 1 HETATM 12 O O12 BYG . . . E 2 12.128 -3.456 10.091 1 19.59 ? O12 BYG 218 A 1 HETATM 13 O O31 BYG . . . E 2 13.112 -10.933 15.348 1 29.66 ? O31 BYG 218 A 1 HETATM 14 O O32 BYG . . . E 2 14.001 -12.439 14.091 1 29.16 ? O32 BYG 218 A 1 HETATM 15 C CA1 BYG . . . E 2 12.532 -2.93 12.384 1 20.9 ? CA1 BYG 218 A 1 HETATM 16 N NA1 BYG . . . E 2 4.699 -4.558 15.859 0.5 27.54 ? NA1 BYG 218 A 1 HETATM 17 C CA2 BYG . . . E 2 9.84 -8.264 13.39 1 28.8 ? CA2 BYG 218 A 1 HETATM 18 O OA2 BYG . . . E 2 5.326 -5.543 16.641 0.5 27.03 ? OA2 BYG 218 A 1 HETATM 19 C CA3 BYG . . . E 2 12.522 -10.879 13.023 1 28.44 ? CA3 BYG 218 A 1 HETATM 20 N NA3 BYG . . . E 2 5.808 -6.608 15.847 0.5 27.43 ? NA3 BYG 218 A 1 HETATM 21 O OA3 BYG . . . E 2 3.315 -2.943 11.671 0.5 26.78 ? OA3 BYG 218 A 1 HETATM 22 N NA4 BYG . . . E 2 3.643 -3.229 12.953 0.5 26.91 ? NA4 BYG 218 A 1 HETATM 23 O OA4 BYG . . . E 2 3.218 -2.253 13.804 0.5 27.22 ? OA4 BYG 218 A 1 HETATM 24 O OA5 BYG . . . E 2 10.766 -8.884 16.972 0.5 35.54 ? OA5 BYG 218 A 1 HETATM 25 C CB1 BYG . . . E 2 12.398 -4.429 12.628 1 21.3 ? CB1 BYG 218 A 1 HETATM 26 C CB2 BYG . . . E 2 8.594 -8.222 12.514 1 29.43 ? CB2 BYG 218 A 1 HETATM 27 C CD1 BYG . . . E 2 10.877 -6.088 13.663 1 24.99 ? CD1 BYG 218 A 1 HETATM 28 C CE1 BYG . . . E 2 9.418 -9.054 16.521 0.5 35.38 ? CE1 BYG 218 A 1 HETATM 29 O OE1 BYG . . . E 2 10.933 -6.036 15.071 1 26.36 ? OE1 BYG 218 A 1 HETATM 30 C CE2 BYG . . . E 2 8.731 -10.134 17.362 0.5 35.07 ? CE2 BYG 218 A 1 HETATM 31 C CE3 BYG . . . E 2 8.305 -11.386 16.621 0.5 33.56 ? CE3 BYG 218 A 1 HETATM 32 C CE4 BYG . . . E 2 7.013 -11.071 15.918 0.5 33.05 ? CE4 BYG 218 A 1 HETATM 33 C CE5 BYG . . . E 2 6.959 -9.6 15.505 0.5 32.77 ? CE5 BYG 218 A 1 HETATM 34 C CE6 BYG . . . E 2 5.545 -9.024 15.371 0.5 31.86 ? CE6 BYG 218 A 1 HETATM 35 C CF4 BYG . . . E 2 5.836 -7.076 13.381 0.5 28.63 ? CF4 BYG 218 A 1 HETATM 36 C CF5 BYG . . . E 2 5.255 -6.413 12.231 0.5 28.17 ? CF5 BYG 218 A 1 HETATM 37 C CF6 BYG . . . E 2 4.604 -5.175 12.24 0.5 27.78 ? CF6 BYG 218 A 1 HETATM 38 C CF7 BYG . . . E 2 4.296 -4.392 13.294 0.5 26.99 ? CF7 BYG 218 A 1 HETATM 39 C CG1 BYG . . . E 2 10.941 -4.819 12.846 1 23.6 ? CG1 BYG 218 A 1 HETATM 40 S SG2 BYG . . . E 2 7.443 -6.893 12.905 1 30.89 ? SG2 BYG 218 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #