data_3GV1 # _model_server_result.job_id yceolA3RnDfVpFkobNi9CA _model_server_result.datetime_utc '2024-10-20 00:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3GV1 # _exptl.entry_id 3GV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.3 _cell.angle_gamma 90 _cell.entry_id 3GV1 _cell.length_a 40.329 _cell.length_b 76.777 _cell.length_c 64.305 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H 1 1 A,B,D,E,F,G,H 2 1 C,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 123 1_555 A N SER 2 A SER 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C LYS 38 A LYS 160 1_555 A N MSE 39 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C MSE 39 A MSE 161 1_555 A N THR 40 A THR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C PHE 47 A PHE 169 1_555 A N MSE 48 A MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C MSE 48 A MSE 170 1_555 A N MSE 49 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 A C MSE 49 A MSE 171 1_555 A N PRO 50 A PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C TRP 78 A TRP 200 1_555 A N MSE 79 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 79 A MSE 201 1_555 A N ARG 80 A ARG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C PRO 126 A PRO 248 1_555 A N MSE 127 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C MSE 127 A MSE 249 1_555 A N PRO 128 A PRO 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale11 B C LYS 38 B LYS 160 1_555 B N MSE 39 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 B C MSE 39 B MSE 161 1_555 B N THR 40 B THR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale13 B C PHE 47 B PHE 169 1_555 B N MSE 48 B MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C MSE 48 B MSE 170 1_555 B N MSE 49 B MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 B C MSE 49 B MSE 171 1_555 B N PRO 50 B PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 B C TRP 78 B TRP 200 1_555 B N MSE 79 B MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 B C MSE 79 B MSE 201 1_555 B N ARG 80 B ARG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale18 B C PRO 126 B PRO 248 1_555 B N MSE 127 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 B C MSE 127 B MSE 249 1_555 B N PRO 128 B PRO 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale20 C C MSE 1 C MSE 123 1_555 C N SER 2 C SER 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C LYS 38 C LYS 160 1_555 C N MSE 39 C MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale22 C C MSE 39 C MSE 161 1_555 C N THR 40 C THR 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale23 C C PHE 47 C PHE 169 1_555 C N MSE 48 C MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 C C MSE 48 C MSE 170 1_555 C N MSE 49 C MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 C C MSE 49 C MSE 171 1_555 C N PRO 50 C PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale26 C C TRP 78 C TRP 200 1_555 C N MSE 79 C MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 C C MSE 79 C MSE 201 1_555 C N ARG 80 C ARG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 C C PRO 126 C PRO 248 1_555 C N MSE 127 C MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C MSE 127 C MSE 249 1_555 C N PRO 128 C PRO 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 3GV1 _atom_sites.fract_transf_matrix[1][1] 0.024796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001866 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BEZ A 1 302 2 BEZ BEZ . E 2 BEZ B 1 301 1 BEZ BEZ . F 2 BEZ B 1 303 3 BEZ BEZ . G 3 HOH A 1 3 3 HOH HOH . G 3 HOH A 2 5 5 HOH HOH . G 3 HOH A 3 6 6 HOH HOH . G 3 HOH A 4 8 8 HOH HOH . G 3 HOH A 5 13 13 HOH HOH . G 3 HOH A 6 14 14 HOH HOH . G 3 HOH A 7 17 17 HOH HOH . G 3 HOH A 8 21 21 HOH HOH . G 3 HOH A 9 22 22 HOH HOH . G 3 HOH A 10 25 25 HOH HOH . G 3 HOH A 11 28 28 HOH HOH . G 3 HOH A 12 30 30 HOH HOH . G 3 HOH A 13 32 32 HOH HOH . G 3 HOH A 14 33 33 HOH HOH . G 3 HOH A 15 34 34 HOH HOH . G 3 HOH A 16 37 37 HOH HOH . G 3 HOH A 17 42 42 HOH HOH . G 3 HOH A 18 43 43 HOH HOH . G 3 HOH A 19 46 46 HOH HOH . G 3 HOH A 20 49 49 HOH HOH . G 3 HOH A 21 54 54 HOH HOH . G 3 HOH A 22 60 60 HOH HOH . G 3 HOH A 23 61 61 HOH HOH . G 3 HOH A 24 63 63 HOH HOH . G 3 HOH A 25 65 65 HOH HOH . G 3 HOH A 26 66 66 HOH HOH . G 3 HOH A 27 71 71 HOH HOH . G 3 HOH A 28 73 73 HOH HOH . G 3 HOH A 29 77 77 HOH HOH . G 3 HOH A 30 80 80 HOH HOH . G 3 HOH A 31 83 83 HOH HOH . G 3 HOH A 32 85 85 HOH HOH . G 3 HOH A 33 91 91 HOH HOH . G 3 HOH A 34 94 94 HOH HOH . G 3 HOH A 35 99 99 HOH HOH . G 3 HOH A 36 100 100 HOH HOH . G 3 HOH A 37 102 102 HOH HOH . G 3 HOH A 38 105 105 HOH HOH . G 3 HOH A 39 106 106 HOH HOH . G 3 HOH A 40 109 109 HOH HOH . G 3 HOH A 41 110 110 HOH HOH . G 3 HOH A 42 112 112 HOH HOH . G 3 HOH A 43 120 120 HOH HOH . G 3 HOH A 44 121 121 HOH HOH . G 3 HOH A 45 270 127 HOH HOH . G 3 HOH A 46 271 130 HOH HOH . G 3 HOH A 47 272 131 HOH HOH . G 3 HOH A 48 273 133 HOH HOH . G 3 HOH A 49 274 135 HOH HOH . G 3 HOH A 50 275 136 HOH HOH . G 3 HOH A 51 276 138 HOH HOH . G 3 HOH A 52 277 142 HOH HOH . G 3 HOH A 53 278 143 HOH HOH . G 3 HOH A 54 279 144 HOH HOH . G 3 HOH A 55 280 147 HOH HOH . G 3 HOH A 56 281 152 HOH HOH . G 3 HOH A 57 282 153 HOH HOH . G 3 HOH A 58 283 155 HOH HOH . G 3 HOH A 59 284 162 HOH HOH . G 3 HOH A 60 285 171 HOH HOH . G 3 HOH A 61 286 173 HOH HOH . G 3 HOH A 62 287 179 HOH HOH . G 3 HOH A 63 288 181 HOH HOH . G 3 HOH A 64 289 182 HOH HOH . G 3 HOH A 65 290 183 HOH HOH . H 3 HOH B 1 1 1 HOH HOH . H 3 HOH B 2 4 4 HOH HOH . H 3 HOH B 3 7 7 HOH HOH . H 3 HOH B 4 10 10 HOH HOH . H 3 HOH B 5 12 12 HOH HOH . H 3 HOH B 6 16 16 HOH HOH . H 3 HOH B 7 18 18 HOH HOH . H 3 HOH B 8 23 23 HOH HOH . H 3 HOH B 9 24 24 HOH HOH . H 3 HOH B 10 26 26 HOH HOH . H 3 HOH B 11 29 29 HOH HOH . H 3 HOH B 12 31 31 HOH HOH . H 3 HOH B 13 38 38 HOH HOH . H 3 HOH B 14 39 39 HOH HOH . H 3 HOH B 15 40 40 HOH HOH . H 3 HOH B 16 44 44 HOH HOH . H 3 HOH B 17 45 45 HOH HOH . H 3 HOH B 18 47 47 HOH HOH . H 3 HOH B 19 50 50 HOH HOH . H 3 HOH B 20 53 53 HOH HOH . H 3 HOH B 21 56 56 HOH HOH . H 3 HOH B 22 70 70 HOH HOH . H 3 HOH B 23 74 74 HOH HOH . H 3 HOH B 24 75 75 HOH HOH . H 3 HOH B 25 81 81 HOH HOH . H 3 HOH B 26 82 82 HOH HOH . H 3 HOH B 27 87 87 HOH HOH . H 3 HOH B 28 89 89 HOH HOH . H 3 HOH B 29 90 90 HOH HOH . H 3 HOH B 30 93 93 HOH HOH . H 3 HOH B 31 95 95 HOH HOH . H 3 HOH B 32 103 103 HOH HOH . H 3 HOH B 33 107 107 HOH HOH . H 3 HOH B 34 111 111 HOH HOH . H 3 HOH B 35 114 114 HOH HOH . H 3 HOH B 36 118 118 HOH HOH . H 3 HOH B 37 119 119 HOH HOH . H 3 HOH B 38 270 123 HOH HOH . H 3 HOH B 39 271 125 HOH HOH . H 3 HOH B 40 272 126 HOH HOH . H 3 HOH B 41 273 137 HOH HOH . H 3 HOH B 42 274 139 HOH HOH . H 3 HOH B 43 275 148 HOH HOH . H 3 HOH B 44 276 150 HOH HOH . H 3 HOH B 45 277 157 HOH HOH . H 3 HOH B 46 278 159 HOH HOH . H 3 HOH B 47 279 160 HOH HOH . H 3 HOH B 48 280 161 HOH HOH . H 3 HOH B 49 281 178 HOH HOH . H 3 HOH B 50 282 187 HOH HOH . I 3 HOH C 1 2 2 HOH HOH . I 3 HOH C 2 9 9 HOH HOH . I 3 HOH C 3 11 11 HOH HOH . I 3 HOH C 4 15 15 HOH HOH . I 3 HOH C 5 19 19 HOH HOH . I 3 HOH C 6 20 20 HOH HOH . I 3 HOH C 7 35 35 HOH HOH . I 3 HOH C 8 36 36 HOH HOH . I 3 HOH C 9 41 41 HOH HOH . I 3 HOH C 10 48 48 HOH HOH . I 3 HOH C 11 51 51 HOH HOH . I 3 HOH C 12 57 57 HOH HOH . I 3 HOH C 13 58 58 HOH HOH . I 3 HOH C 14 59 59 HOH HOH . I 3 HOH C 15 62 62 HOH HOH . I 3 HOH C 16 64 64 HOH HOH . I 3 HOH C 17 67 67 HOH HOH . I 3 HOH C 18 68 68 HOH HOH . I 3 HOH C 19 69 69 HOH HOH . I 3 HOH C 20 72 72 HOH HOH . I 3 HOH C 21 76 76 HOH HOH . I 3 HOH C 22 78 78 HOH HOH . I 3 HOH C 23 79 79 HOH HOH . I 3 HOH C 24 84 84 HOH HOH . I 3 HOH C 25 86 86 HOH HOH . I 3 HOH C 26 88 88 HOH HOH . I 3 HOH C 27 92 92 HOH HOH . I 3 HOH C 28 96 96 HOH HOH . I 3 HOH C 29 97 97 HOH HOH . I 3 HOH C 30 98 98 HOH HOH . I 3 HOH C 31 101 101 HOH HOH . I 3 HOH C 32 104 104 HOH HOH . I 3 HOH C 33 108 108 HOH HOH . I 3 HOH C 34 113 113 HOH HOH . I 3 HOH C 35 115 115 HOH HOH . I 3 HOH C 36 116 116 HOH HOH . I 3 HOH C 37 117 117 HOH HOH . I 3 HOH C 38 122 122 HOH HOH . I 3 HOH C 39 270 124 HOH HOH . I 3 HOH C 40 271 128 HOH HOH . I 3 HOH C 41 272 129 HOH HOH . I 3 HOH C 42 273 132 HOH HOH . I 3 HOH C 43 274 134 HOH HOH . I 3 HOH C 44 275 141 HOH HOH . I 3 HOH C 45 276 145 HOH HOH . I 3 HOH C 46 277 146 HOH HOH . I 3 HOH C 47 278 149 HOH HOH . I 3 HOH C 48 279 151 HOH HOH . I 3 HOH C 49 280 156 HOH HOH . I 3 HOH C 50 281 158 HOH HOH . I 3 HOH C 51 282 163 HOH HOH . I 3 HOH C 52 283 164 HOH HOH . I 3 HOH C 53 284 165 HOH HOH . I 3 HOH C 54 285 166 HOH HOH . I 3 HOH C 55 286 168 HOH HOH . I 3 HOH C 56 287 170 HOH HOH . I 3 HOH C 57 288 172 HOH HOH . I 3 HOH C 58 289 174 HOH HOH . I 3 HOH C 59 290 175 HOH HOH . I 3 HOH C 60 291 176 HOH HOH . I 3 HOH C 61 292 177 HOH HOH . I 3 HOH C 62 293 180 HOH HOH . I 3 HOH C 63 294 184 HOH HOH . I 3 HOH C 64 295 185 HOH HOH . I 3 HOH C 65 296 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . E 2 35.225 30.24 21.288 1 23.67 ? C BEZ 301 B 1 HETATM 2 O O1 BEZ . . . E 2 34.64 29.681 22.172 1 22.08 ? O1 BEZ 301 B 1 HETATM 3 O O2 BEZ . . . E 2 36.439 30.866 21.564 1 23.92 ? O2 BEZ 301 B 1 HETATM 4 C C1 BEZ . . . E 2 34.665 30.327 19.863 1 22.96 ? C1 BEZ 301 B 1 HETATM 5 C C2 BEZ . . . E 2 35.347 30.975 18.93 1 23.06 ? C2 BEZ 301 B 1 HETATM 6 C C3 BEZ . . . E 2 34.829 31.084 17.504 1 21.99 ? C3 BEZ 301 B 1 HETATM 7 C C4 BEZ . . . E 2 33.666 30.541 17.186 1 22.41 ? C4 BEZ 301 B 1 HETATM 8 C C5 BEZ . . . E 2 32.871 29.804 18.273 1 20.23 ? C5 BEZ 301 B 1 HETATM 9 C C6 BEZ . . . E 2 33.326 29.706 19.511 1 20.88 ? C6 BEZ 301 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #