data_3GVF # _model_server_result.job_id fVhozrTNw5RwoS37M0UKJg _model_server_result.datetime_utc '2024-11-22 19:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":177}' # _entry.id 3GVF # _exptl.entry_id 3GVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GVF _cell.length_a 100.212 _cell.length_b 100.212 _cell.length_c 110.667 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4,5,6 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -100.212 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.106 -86.786138 0 4 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -50.106 -86.786138 55.3335 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -100.212 0 55.3335 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 55.3335 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 32 A ASP 11 1_555 C K K . A K 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 A O LEU 33 A LEU 12 1_555 C K K . A K 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A OE1 GLN 35 A GLN 14 1_555 C K K . A K 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc4 A OD2 ASP 87 A ASP 66 1_555 D NA NA . A NA 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 A OD2 ASP 92 A ASP 71 1_555 D NA NA . A NA 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 D NA NA . A NA 178 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc7 D NA NA . A NA 178 1_555 H O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GVF _atom_sites.fract_transf_matrix[1][1] 0.009979 _atom_sites.fract_transf_matrix[1][2] 0.005761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 176 1 PO4 PO4 . C 3 K A 1 177 1 K K . D 4 NA A 1 178 1 NA NA . E 5 PGE A 1 179 1 PGE 136 . F 6 PEG A 1 180 3 PEG PG2 . G 5 PGE A 1 181 2 PGE PGE . H 7 HOH A 1 182 1 HOH HOH . H 7 HOH A 2 183 2 HOH HOH . H 7 HOH A 3 184 3 HOH HOH . H 7 HOH A 4 185 4 HOH HOH . H 7 HOH A 5 186 5 HOH HOH . H 7 HOH A 6 187 6 HOH HOH . H 7 HOH A 7 188 7 HOH HOH . H 7 HOH A 8 189 8 HOH HOH . H 7 HOH A 9 190 9 HOH HOH . H 7 HOH A 10 191 10 HOH HOH . H 7 HOH A 11 192 11 HOH HOH . H 7 HOH A 12 193 12 HOH HOH . H 7 HOH A 13 194 13 HOH HOH . H 7 HOH A 14 195 14 HOH HOH . H 7 HOH A 15 196 15 HOH HOH . H 7 HOH A 16 197 16 HOH HOH . H 7 HOH A 17 198 17 HOH HOH . H 7 HOH A 18 199 18 HOH HOH . H 7 HOH A 19 200 19 HOH HOH . H 7 HOH A 20 201 20 HOH HOH . H 7 HOH A 21 202 21 HOH HOH . H 7 HOH A 22 203 22 HOH HOH . H 7 HOH A 23 204 23 HOH HOH . H 7 HOH A 24 205 24 HOH HOH . H 7 HOH A 25 206 25 HOH HOH . H 7 HOH A 26 207 26 HOH HOH . H 7 HOH A 27 208 27 HOH HOH . H 7 HOH A 28 209 28 HOH HOH . H 7 HOH A 29 210 29 HOH HOH . H 7 HOH A 30 211 30 HOH HOH . H 7 HOH A 31 212 31 HOH HOH . H 7 HOH A 32 213 32 HOH HOH . H 7 HOH A 33 214 33 HOH HOH . H 7 HOH A 34 215 34 HOH HOH . H 7 HOH A 35 216 35 HOH HOH . H 7 HOH A 36 217 36 HOH HOH . H 7 HOH A 37 218 37 HOH HOH . H 7 HOH A 38 219 38 HOH HOH . H 7 HOH A 39 220 39 HOH HOH . H 7 HOH A 40 221 40 HOH HOH . H 7 HOH A 41 222 41 HOH HOH . H 7 HOH A 42 223 42 HOH HOH . H 7 HOH A 43 224 43 HOH HOH . H 7 HOH A 44 225 44 HOH HOH . H 7 HOH A 45 226 45 HOH HOH . H 7 HOH A 46 227 46 HOH HOH . H 7 HOH A 47 228 47 HOH HOH . H 7 HOH A 48 229 48 HOH HOH . H 7 HOH A 49 230 49 HOH HOH . H 7 HOH A 50 231 50 HOH HOH . H 7 HOH A 51 232 51 HOH HOH . H 7 HOH A 52 233 52 HOH HOH . H 7 HOH A 53 234 53 HOH HOH . H 7 HOH A 54 235 54 HOH HOH . H 7 HOH A 55 236 55 HOH HOH . H 7 HOH A 56 237 56 HOH HOH . H 7 HOH A 57 238 57 HOH HOH . H 7 HOH A 58 239 58 HOH HOH . H 7 HOH A 59 240 59 HOH HOH . H 7 HOH A 60 241 60 HOH HOH . H 7 HOH A 61 242 61 HOH HOH . H 7 HOH A 62 243 62 HOH HOH . H 7 HOH A 63 244 63 HOH HOH . H 7 HOH A 64 245 64 HOH HOH . H 7 HOH A 65 246 65 HOH HOH . H 7 HOH A 66 247 66 HOH HOH . H 7 HOH A 67 248 67 HOH HOH . H 7 HOH A 68 249 68 HOH HOH . H 7 HOH A 69 250 69 HOH HOH . H 7 HOH A 70 251 70 HOH HOH . H 7 HOH A 71 252 71 HOH HOH . H 7 HOH A 72 253 72 HOH HOH . H 7 HOH A 73 254 73 HOH HOH . H 7 HOH A 74 255 74 HOH HOH . H 7 HOH A 75 256 75 HOH HOH . H 7 HOH A 76 257 76 HOH HOH . H 7 HOH A 77 258 77 HOH HOH . H 7 HOH A 78 259 78 HOH HOH . H 7 HOH A 79 260 79 HOH HOH . H 7 HOH A 80 261 80 HOH HOH . H 7 HOH A 81 262 81 HOH HOH . H 7 HOH A 82 263 82 HOH HOH . H 7 HOH A 83 264 83 HOH HOH . H 7 HOH A 84 265 84 HOH HOH . H 7 HOH A 85 266 85 HOH HOH . H 7 HOH A 86 267 86 HOH HOH . H 7 HOH A 87 268 87 HOH HOH . H 7 HOH A 88 269 88 HOH HOH . H 7 HOH A 89 270 89 HOH HOH . H 7 HOH A 90 271 90 HOH HOH . H 7 HOH A 91 272 91 HOH HOH . H 7 HOH A 92 273 92 HOH HOH . H 7 HOH A 93 274 93 HOH HOH . H 7 HOH A 94 275 94 HOH HOH . H 7 HOH A 95 276 95 HOH HOH . H 7 HOH A 96 277 96 HOH HOH . H 7 HOH A 97 278 97 HOH HOH . H 7 HOH A 98 279 98 HOH HOH . H 7 HOH A 99 280 99 HOH HOH . H 7 HOH A 100 281 100 HOH HOH . H 7 HOH A 101 282 101 HOH HOH . H 7 HOH A 102 283 102 HOH HOH . H 7 HOH A 103 284 103 HOH HOH . H 7 HOH A 104 285 104 HOH HOH . H 7 HOH A 105 286 105 HOH HOH . H 7 HOH A 106 287 106 HOH HOH . H 7 HOH A 107 288 107 HOH HOH . H 7 HOH A 108 289 108 HOH HOH . H 7 HOH A 109 290 109 HOH HOH . H 7 HOH A 110 291 110 HOH HOH . H 7 HOH A 111 292 111 HOH HOH . H 7 HOH A 112 293 112 HOH HOH . H 7 HOH A 113 294 113 HOH HOH . H 7 HOH A 114 295 114 HOH HOH . H 7 HOH A 115 296 115 HOH HOH . H 7 HOH A 116 297 116 HOH HOH . H 7 HOH A 117 298 117 HOH HOH . H 7 HOH A 118 299 118 HOH HOH . H 7 HOH A 119 300 119 HOH HOH . H 7 HOH A 120 301 120 HOH HOH . H 7 HOH A 121 302 121 HOH HOH . H 7 HOH A 122 303 122 HOH HOH . H 7 HOH A 123 304 123 HOH HOH . H 7 HOH A 124 305 124 HOH HOH . H 7 HOH A 125 306 125 HOH HOH . H 7 HOH A 126 307 126 HOH HOH . H 7 HOH A 127 308 127 HOH HOH . H 7 HOH A 128 309 128 HOH HOH . H 7 HOH A 129 310 129 HOH HOH . H 7 HOH A 130 311 130 HOH HOH . H 7 HOH A 131 312 131 HOH HOH . H 7 HOH A 132 313 132 HOH HOH . H 7 HOH A 133 314 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -49.335 _atom_site.Cartn_y 0.121 _atom_site.Cartn_z 0.101 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 29.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 177 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #