data_3GVT # _model_server_result.job_id AWxHdSWqYDYTdYNRiFBlxQ _model_server_result.datetime_utc '2024-12-21 11:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3GVT # _exptl.entry_id 3GVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GVT _cell.length_a 150.54 _cell.length_b 150.54 _cell.length_c 77.22 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 3GVT _atom_sites.fract_transf_matrix[1][1] 0.006643 _atom_sites.fract_transf_matrix[1][2] 0.003835 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DTT A 1 1 1 DTT DTT . D 3 GOL A 1 1057 1 GOL GOL . E 3 GOL A 1 1058 1 GOL GOL . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 6 6 HOH HOH . F 4 HOH A 3 7 7 HOH HOH . F 4 HOH A 4 8 8 HOH HOH . F 4 HOH A 5 10 10 HOH HOH . F 4 HOH A 6 11 11 HOH HOH . F 4 HOH A 7 12 12 HOH HOH . F 4 HOH A 8 13 13 HOH HOH . F 4 HOH A 9 15 15 HOH HOH . F 4 HOH A 10 16 16 HOH HOH . F 4 HOH A 11 19 19 HOH HOH . F 4 HOH A 12 21 21 HOH HOH . F 4 HOH A 13 24 24 HOH HOH . F 4 HOH A 14 25 25 HOH HOH . F 4 HOH A 15 28 28 HOH HOH . F 4 HOH A 16 29 29 HOH HOH . F 4 HOH A 17 31 31 HOH HOH . F 4 HOH A 18 33 33 HOH HOH . F 4 HOH A 19 34 34 HOH HOH . F 4 HOH A 20 37 37 HOH HOH . F 4 HOH A 21 42 42 HOH HOH . F 4 HOH A 22 43 43 HOH HOH . F 4 HOH A 23 45 45 HOH HOH . F 4 HOH A 24 51 51 HOH HOH . F 4 HOH A 25 52 52 HOH HOH . F 4 HOH A 26 53 53 HOH HOH . F 4 HOH A 27 54 54 HOH HOH . F 4 HOH A 28 56 56 HOH HOH . F 4 HOH A 29 58 58 HOH HOH . F 4 HOH A 30 64 64 HOH HOH . F 4 HOH A 31 68 68 HOH HOH . F 4 HOH A 32 69 69 HOH HOH . F 4 HOH A 33 71 71 HOH HOH . F 4 HOH A 34 73 73 HOH HOH . F 4 HOH A 35 74 74 HOH HOH . F 4 HOH A 36 75 75 HOH HOH . F 4 HOH A 37 76 76 HOH HOH . F 4 HOH A 38 77 77 HOH HOH . F 4 HOH A 39 80 80 HOH HOH . F 4 HOH A 40 81 81 HOH HOH . F 4 HOH A 41 82 82 HOH HOH . F 4 HOH A 42 83 83 HOH HOH . F 4 HOH A 43 85 85 HOH HOH . G 4 HOH B 1 1 1 HOH HOH . G 4 HOH B 2 3 3 HOH HOH . G 4 HOH B 3 4 4 HOH HOH . G 4 HOH B 4 5 5 HOH HOH . G 4 HOH B 5 9 9 HOH HOH . G 4 HOH B 6 14 14 HOH HOH . G 4 HOH B 7 17 17 HOH HOH . G 4 HOH B 8 18 18 HOH HOH . G 4 HOH B 9 20 20 HOH HOH . G 4 HOH B 10 22 22 HOH HOH . G 4 HOH B 11 23 23 HOH HOH . G 4 HOH B 12 26 26 HOH HOH . G 4 HOH B 13 27 27 HOH HOH . G 4 HOH B 14 30 30 HOH HOH . G 4 HOH B 15 32 32 HOH HOH . G 4 HOH B 16 35 35 HOH HOH . G 4 HOH B 17 36 36 HOH HOH . G 4 HOH B 18 38 38 HOH HOH . G 4 HOH B 19 39 39 HOH HOH . G 4 HOH B 20 40 40 HOH HOH . G 4 HOH B 21 41 41 HOH HOH . G 4 HOH B 22 44 44 HOH HOH . G 4 HOH B 23 46 46 HOH HOH . G 4 HOH B 24 47 47 HOH HOH . G 4 HOH B 25 48 48 HOH HOH . G 4 HOH B 26 49 49 HOH HOH . G 4 HOH B 27 50 50 HOH HOH . G 4 HOH B 28 55 55 HOH HOH . G 4 HOH B 29 57 57 HOH HOH . G 4 HOH B 30 59 59 HOH HOH . G 4 HOH B 31 60 60 HOH HOH . G 4 HOH B 32 61 61 HOH HOH . G 4 HOH B 33 62 62 HOH HOH . G 4 HOH B 34 63 63 HOH HOH . G 4 HOH B 35 65 65 HOH HOH . G 4 HOH B 36 66 66 HOH HOH . G 4 HOH B 37 67 67 HOH HOH . G 4 HOH B 38 70 70 HOH HOH . G 4 HOH B 39 72 72 HOH HOH . G 4 HOH B 40 78 78 HOH HOH . G 4 HOH B 41 79 79 HOH HOH . G 4 HOH B 42 84 84 HOH HOH . G 4 HOH B 43 86 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . C 2 -57.179 31.174 -26.54 1 67.84 ? S1 DTT 1 A 1 HETATM 2 C C1 DTT . . . C 2 -56.053 29.889 -25.954 1 65.82 ? C1 DTT 1 A 1 HETATM 3 C C2 DTT . . . C 2 -56.784 28.764 -25.246 1 64.6 ? C2 DTT 1 A 1 HETATM 4 O O2 DTT . . . C 2 -57.69 28.102 -26.112 1 64.98 ? O2 DTT 1 A 1 HETATM 5 C C3 DTT . . . C 2 -57.546 29.266 -24.037 1 65.05 ? C3 DTT 1 A 1 HETATM 6 O O3 DTT . . . C 2 -58.863 29.631 -24.399 1 64.72 ? O3 DTT 1 A 1 HETATM 7 C C4 DTT . . . C 2 -57.635 28.11 -23.051 1 65.44 ? C4 DTT 1 A 1 HETATM 8 S S4 DTT . . . C 2 -56.491 26.758 -23.446 1 65.02 ? S4 DTT 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #