data_3GVU # _model_server_result.job_id 5rBNu7I6OhtP3Sm6I7H70A _model_server_result.datetime_utc '2024-11-23 01:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3GVU # _exptl.entry_id 3GVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GVU _cell.length_a 88.46 _cell.length_b 99.44 _cell.length_c 87.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 3GVU _atom_sites.fract_transf_matrix[1][1] 0.011305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1001 1001 STI RES . C 2 STI A 1 1002 1002 STI RES . D 3 HOH A 1 7 7 HOH HOH . D 3 HOH A 2 8 8 HOH HOH . D 3 HOH A 3 9 9 HOH HOH . D 3 HOH A 4 12 12 HOH HOH . D 3 HOH A 5 13 13 HOH HOH . D 3 HOH A 6 14 14 HOH HOH . D 3 HOH A 7 16 16 HOH HOH . D 3 HOH A 8 17 17 HOH HOH . D 3 HOH A 9 20 20 HOH HOH . D 3 HOH A 10 21 21 HOH HOH . D 3 HOH A 11 22 22 HOH HOH . D 3 HOH A 12 24 24 HOH HOH . D 3 HOH A 13 25 25 HOH HOH . D 3 HOH A 14 27 27 HOH HOH . D 3 HOH A 15 28 28 HOH HOH . D 3 HOH A 16 30 30 HOH HOH . D 3 HOH A 17 34 34 HOH HOH . D 3 HOH A 18 35 35 HOH HOH . D 3 HOH A 19 36 36 HOH HOH . D 3 HOH A 20 38 38 HOH HOH . D 3 HOH A 21 39 39 HOH HOH . D 3 HOH A 22 42 42 HOH HOH . D 3 HOH A 23 43 43 HOH HOH . D 3 HOH A 24 46 46 HOH HOH . D 3 HOH A 25 47 47 HOH HOH . D 3 HOH A 26 49 49 HOH HOH . D 3 HOH A 27 51 51 HOH HOH . D 3 HOH A 28 52 52 HOH HOH . D 3 HOH A 29 53 53 HOH HOH . D 3 HOH A 30 54 54 HOH HOH . D 3 HOH A 31 55 55 HOH HOH . D 3 HOH A 32 56 56 HOH HOH . D 3 HOH A 33 57 57 HOH HOH . D 3 HOH A 34 61 61 HOH HOH . D 3 HOH A 35 70 70 HOH HOH . D 3 HOH A 36 73 73 HOH HOH . D 3 HOH A 37 74 74 HOH HOH . D 3 HOH A 38 77 77 HOH HOH . D 3 HOH A 39 79 79 HOH HOH . D 3 HOH A 40 80 80 HOH HOH . D 3 HOH A 41 81 81 HOH HOH . D 3 HOH A 42 82 82 HOH HOH . D 3 HOH A 43 83 83 HOH HOH . D 3 HOH A 44 85 85 HOH HOH . D 3 HOH A 45 86 86 HOH HOH . D 3 HOH A 46 88 88 HOH HOH . D 3 HOH A 47 89 89 HOH HOH . D 3 HOH A 48 90 90 HOH HOH . D 3 HOH A 49 91 91 HOH HOH . D 3 HOH A 50 93 93 HOH HOH . D 3 HOH A 51 95 95 HOH HOH . D 3 HOH A 52 96 96 HOH HOH . D 3 HOH A 53 99 99 HOH HOH . D 3 HOH A 54 100 100 HOH HOH . D 3 HOH A 55 101 101 HOH HOH . D 3 HOH A 56 103 103 HOH HOH . D 3 HOH A 57 114 114 HOH HOH . D 3 HOH A 58 116 116 HOH HOH . D 3 HOH A 59 117 117 HOH HOH . D 3 HOH A 60 118 118 HOH HOH . D 3 HOH A 61 120 120 HOH HOH . D 3 HOH A 62 121 121 HOH HOH . D 3 HOH A 63 122 122 HOH HOH . D 3 HOH A 64 129 129 HOH HOH . D 3 HOH A 65 130 130 HOH HOH . D 3 HOH A 66 132 132 HOH HOH . D 3 HOH A 67 133 133 HOH HOH . D 3 HOH A 68 134 134 HOH HOH . D 3 HOH A 69 135 135 HOH HOH . D 3 HOH A 70 136 136 HOH HOH . D 3 HOH A 71 138 138 HOH HOH . D 3 HOH A 72 141 141 HOH HOH . D 3 HOH A 73 161 161 HOH HOH . D 3 HOH A 74 164 164 HOH HOH . D 3 HOH A 75 166 166 HOH HOH . D 3 HOH A 76 168 168 HOH HOH . D 3 HOH A 77 170 170 HOH HOH . D 3 HOH A 78 173 173 HOH HOH . D 3 HOH A 79 174 174 HOH HOH . D 3 HOH A 80 175 175 HOH HOH . D 3 HOH A 81 176 176 HOH HOH . D 3 HOH A 82 178 178 HOH HOH . D 3 HOH A 83 180 180 HOH HOH . D 3 HOH A 84 182 182 HOH HOH . D 3 HOH A 85 183 183 HOH HOH . D 3 HOH A 86 184 184 HOH HOH . D 3 HOH A 87 185 185 HOH HOH . D 3 HOH A 88 186 186 HOH HOH . D 3 HOH A 89 187 187 HOH HOH . D 3 HOH A 90 188 188 HOH HOH . D 3 HOH A 91 189 189 HOH HOH . D 3 HOH A 92 190 190 HOH HOH . D 3 HOH A 93 191 191 HOH HOH . D 3 HOH A 94 193 193 HOH HOH . D 3 HOH A 95 194 194 HOH HOH . D 3 HOH A 96 195 195 HOH HOH . D 3 HOH A 97 196 196 HOH HOH . D 3 HOH A 98 197 197 HOH HOH . D 3 HOH A 99 198 198 HOH HOH . D 3 HOH A 100 199 199 HOH HOH . D 3 HOH A 101 200 200 HOH HOH . D 3 HOH A 102 201 201 HOH HOH . D 3 HOH A 103 202 202 HOH HOH . D 3 HOH A 104 203 203 HOH HOH . D 3 HOH A 105 205 205 HOH HOH . D 3 HOH A 106 206 206 HOH HOH . D 3 HOH A 107 207 207 HOH HOH . D 3 HOH A 108 208 208 HOH HOH . D 3 HOH A 109 209 209 HOH HOH . D 3 HOH A 110 210 210 HOH HOH . D 3 HOH A 111 211 211 HOH HOH . D 3 HOH A 112 212 212 HOH HOH . D 3 HOH A 113 213 213 HOH HOH . D 3 HOH A 114 214 214 HOH HOH . D 3 HOH A 115 215 215 HOH HOH . D 3 HOH A 116 216 216 HOH HOH . D 3 HOH A 117 217 217 HOH HOH . D 3 HOH A 118 218 218 HOH HOH . D 3 HOH A 119 219 219 HOH HOH . D 3 HOH A 120 221 221 HOH HOH . D 3 HOH A 121 227 227 HOH HOH . D 3 HOH A 122 228 228 HOH HOH . D 3 HOH A 123 229 229 HOH HOH . D 3 HOH A 124 230 230 HOH HOH . D 3 HOH A 125 231 231 HOH HOH . D 3 HOH A 126 232 232 HOH HOH . D 3 HOH A 127 233 233 HOH HOH . D 3 HOH A 128 234 234 HOH HOH . D 3 HOH A 129 237 237 HOH HOH . D 3 HOH A 130 238 238 HOH HOH . D 3 HOH A 131 239 239 HOH HOH . D 3 HOH A 132 240 240 HOH HOH . D 3 HOH A 133 241 241 HOH HOH . D 3 HOH A 134 242 242 HOH HOH . D 3 HOH A 135 243 243 HOH HOH . D 3 HOH A 136 244 244 HOH HOH . D 3 HOH A 137 245 245 HOH HOH . D 3 HOH A 138 246 246 HOH HOH . D 3 HOH A 139 247 247 HOH HOH . D 3 HOH A 140 248 248 HOH HOH . D 3 HOH A 141 249 249 HOH HOH . D 3 HOH A 142 250 250 HOH HOH . D 3 HOH A 143 251 251 HOH HOH . D 3 HOH A 144 252 252 HOH HOH . D 3 HOH A 145 253 253 HOH HOH . D 3 HOH A 146 254 254 HOH HOH . D 3 HOH A 147 547 255 HOH HOH . D 3 HOH A 148 548 256 HOH HOH . D 3 HOH A 149 549 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 6.574 7.654 23.339 1 24.83 ? C1 STI 1001 A 1 HETATM 2 C C6 STI . . . B 2 7.413 8.386 22.5 1 24.37 ? C6 STI 1001 A 1 HETATM 3 C C5 STI . . . B 2 8.474 7.718 21.866 1 23.25 ? C5 STI 1001 A 1 HETATM 4 C C4 STI . . . B 2 8.633 6.351 22.102 1 22.3 ? C4 STI 1001 A 1 HETATM 5 N N3 STI . . . B 2 7.815 5.68 22.909 1 31.16 ? N3 STI 1001 A 1 HETATM 6 C C2 STI . . . B 2 6.808 6.284 23.518 1 25.41 ? C2 STI 1001 A 1 HETATM 7 C C7 STI . . . B 2 9.352 8.39 21.009 1 30.53 ? C7 STI 1001 A 1 HETATM 8 C C12 STI . . . B 2 9.136 9.725 20.671 1 21.03 ? C12 STI 1001 A 1 HETATM 9 C C11 STI . . . B 2 10.043 10.333 19.805 1 24.67 ? C11 STI 1001 A 1 HETATM 10 N N10 STI . . . B 2 11.082 9.676 19.327 1 21.78 ? N10 STI 1001 A 1 HETATM 11 C C9 STI . . . B 2 11.291 8.403 19.671 1 21.09 ? C9 STI 1001 A 1 HETATM 12 N N8 STI . . . B 2 10.426 7.759 20.48 1 20.2 ? N8 STI 1001 A 1 HETATM 13 N N13 STI . . . B 2 12.337 7.743 19.19 1 21.55 ? N13 STI 1001 A 1 HETATM 14 C C14 STI . . . B 2 13.172 8.218 18.245 1 18.81 ? C14 STI 1001 A 1 HETATM 15 C C19 STI . . . B 2 12.864 8.126 16.901 1 19.37 ? C19 STI 1001 A 1 HETATM 16 C C18 STI . . . B 2 13.785 8.573 15.964 1 11.58 ? C18 STI 1001 A 1 HETATM 17 C C17 STI . . . B 2 14.998 9.095 16.339 1 21.2 ? C17 STI 1001 A 1 HETATM 18 C C16 STI . . . B 2 15.337 9.192 17.68 1 21.26 ? C16 STI 1001 A 1 HETATM 19 C C15 STI . . . B 2 14.411 8.726 18.616 1 17.31 ? C15 STI 1001 A 1 HETATM 20 N N21 STI . . . B 2 16.571 9.663 17.992 1 18.55 ? N21 STI 1001 A 1 HETATM 21 C C22 STI . . . B 2 17.077 9.836 19.227 1 22.94 ? C22 STI 1001 A 1 HETATM 22 C C23 STI . . . B 2 18.564 10.223 19.289 1 18.11 ? C23 STI 1001 A 1 HETATM 23 C C25 STI . . . B 2 19.247 10.823 18.238 1 22.32 ? C25 STI 1001 A 1 HETATM 24 C C26 STI . . . B 2 20.598 11.153 18.375 1 22.34 ? C26 STI 1001 A 1 HETATM 25 C C27 STI . . . B 2 21.281 10.887 19.557 1 24.57 ? C27 STI 1001 A 1 HETATM 26 C C28 STI . . . B 2 20.59 10.284 20.579 1 18.95 ? C28 STI 1001 A 1 HETATM 27 C C29 STI . . . B 2 19.247 9.961 20.456 1 21.9 ? C29 STI 1001 A 1 HETATM 28 C C46 STI . . . B 2 22.785 11.255 19.771 1 19.96 ? C46 STI 1001 A 1 HETATM 29 N N48 STI . . . B 2 23.082 12.619 19.284 1 22.34 ? N48 STI 1001 A 1 HETATM 30 C C53 STI . . . B 2 22.263 13.509 20.022 1 20.78 ? C53 STI 1001 A 1 HETATM 31 C C52 STI . . . B 2 22.513 14.894 19.409 1 21.82 ? C52 STI 1001 A 1 HETATM 32 N N51 STI . . . B 2 23.92 15.334 19.584 1 26.69 ? N51 STI 1001 A 1 HETATM 33 C C54 STI . . . B 2 24.284 16.496 18.778 1 24.5 ? C54 STI 1001 A 1 HETATM 34 C C50 STI . . . B 2 24.718 14.303 18.843 1 20.79 ? C50 STI 1001 A 1 HETATM 35 C C49 STI . . . B 2 24.487 12.894 19.459 1 26.94 ? C49 STI 1001 A 1 HETATM 36 O O29 STI . . . B 2 16.448 9.748 20.287 1 20.21 ? O29 STI 1001 A 1 HETATM 37 C C20 STI . . . B 2 11.517 7.562 16.433 1 13.81 ? C20 STI 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #