data_3GWD # _model_server_result.job_id '_IpT5HkMunygM8Iv4mV16Q' _model_server_result.datetime_utc '2025-07-16 08:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":541}' # _entry.id 3GWD # _exptl.entry_id 3GWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GWD _cell.length_a 62.485 _cell.length_b 90.989 _cell.length_c 100.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3GWD _atom_sites.fract_transf_matrix[1][1] 0.016004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 541 541 FAD FAD . C 3 NAP A 1 542 542 NAP NAP . D 3 NAP A 1 543 542 NAP NAP . E 4 HOH A 1 544 544 HOH HOH . E 4 HOH A 2 545 545 HOH HOH . E 4 HOH A 3 546 546 HOH HOH . E 4 HOH A 4 547 547 HOH HOH . E 4 HOH A 5 548 548 HOH HOH . E 4 HOH A 6 549 549 HOH HOH . E 4 HOH A 7 550 550 HOH HOH . E 4 HOH A 8 551 551 HOH HOH . E 4 HOH A 9 552 552 HOH HOH . E 4 HOH A 10 553 553 HOH HOH . E 4 HOH A 11 554 554 HOH HOH . E 4 HOH A 12 555 555 HOH HOH . E 4 HOH A 13 556 556 HOH HOH . E 4 HOH A 14 557 557 HOH HOH . E 4 HOH A 15 558 558 HOH HOH . E 4 HOH A 16 559 559 HOH HOH . E 4 HOH A 17 560 560 HOH HOH . E 4 HOH A 18 561 561 HOH HOH . E 4 HOH A 19 562 562 HOH HOH . E 4 HOH A 20 563 563 HOH HOH . E 4 HOH A 21 564 564 HOH HOH . E 4 HOH A 22 565 565 HOH HOH . E 4 HOH A 23 566 566 HOH HOH . E 4 HOH A 24 567 567 HOH HOH . E 4 HOH A 25 568 568 HOH HOH . E 4 HOH A 26 569 569 HOH HOH . E 4 HOH A 27 570 570 HOH HOH . E 4 HOH A 28 571 571 HOH HOH . E 4 HOH A 29 572 572 HOH HOH . E 4 HOH A 30 573 573 HOH HOH . E 4 HOH A 31 574 574 HOH HOH . E 4 HOH A 32 575 575 HOH HOH . E 4 HOH A 33 576 576 HOH HOH . E 4 HOH A 34 577 577 HOH HOH . E 4 HOH A 35 578 578 HOH HOH . E 4 HOH A 36 579 579 HOH HOH . E 4 HOH A 37 580 580 HOH HOH . E 4 HOH A 38 581 581 HOH HOH . E 4 HOH A 39 582 582 HOH HOH . E 4 HOH A 40 583 583 HOH HOH . E 4 HOH A 41 584 584 HOH HOH . E 4 HOH A 42 585 585 HOH HOH . E 4 HOH A 43 586 586 HOH HOH . E 4 HOH A 44 587 587 HOH HOH . E 4 HOH A 45 588 588 HOH HOH . E 4 HOH A 46 589 589 HOH HOH . E 4 HOH A 47 590 590 HOH HOH . E 4 HOH A 48 591 591 HOH HOH . E 4 HOH A 49 592 592 HOH HOH . E 4 HOH A 50 593 593 HOH HOH . E 4 HOH A 51 594 594 HOH HOH . E 4 HOH A 52 595 595 HOH HOH . E 4 HOH A 53 596 596 HOH HOH . E 4 HOH A 54 597 597 HOH HOH . E 4 HOH A 55 598 598 HOH HOH . E 4 HOH A 56 599 599 HOH HOH . E 4 HOH A 57 600 600 HOH HOH . E 4 HOH A 58 601 601 HOH HOH . E 4 HOH A 59 602 602 HOH HOH . E 4 HOH A 60 603 603 HOH HOH . E 4 HOH A 61 604 604 HOH HOH . E 4 HOH A 62 605 605 HOH HOH . E 4 HOH A 63 606 606 HOH HOH . E 4 HOH A 64 607 607 HOH HOH . E 4 HOH A 65 608 608 HOH HOH . E 4 HOH A 66 609 609 HOH HOH . E 4 HOH A 67 610 610 HOH HOH . E 4 HOH A 68 611 611 HOH HOH . E 4 HOH A 69 612 612 HOH HOH . E 4 HOH A 70 613 613 HOH HOH . E 4 HOH A 71 614 614 HOH HOH . E 4 HOH A 72 615 615 HOH HOH . E 4 HOH A 73 616 616 HOH HOH . E 4 HOH A 74 617 617 HOH HOH . E 4 HOH A 75 618 618 HOH HOH . E 4 HOH A 76 619 619 HOH HOH . E 4 HOH A 77 620 620 HOH HOH . E 4 HOH A 78 621 621 HOH HOH . E 4 HOH A 79 622 622 HOH HOH . E 4 HOH A 80 623 623 HOH HOH . E 4 HOH A 81 624 624 HOH HOH . E 4 HOH A 82 625 625 HOH HOH . E 4 HOH A 83 626 626 HOH HOH . E 4 HOH A 84 627 627 HOH HOH . E 4 HOH A 85 628 628 HOH HOH . E 4 HOH A 86 629 629 HOH HOH . E 4 HOH A 87 630 630 HOH HOH . E 4 HOH A 88 631 631 HOH HOH . E 4 HOH A 89 632 632 HOH HOH . E 4 HOH A 90 633 633 HOH HOH . E 4 HOH A 91 634 634 HOH HOH . E 4 HOH A 92 635 635 HOH HOH . E 4 HOH A 93 636 636 HOH HOH . E 4 HOH A 94 637 637 HOH HOH . E 4 HOH A 95 638 638 HOH HOH . E 4 HOH A 96 639 639 HOH HOH . E 4 HOH A 97 640 640 HOH HOH . E 4 HOH A 98 641 641 HOH HOH . E 4 HOH A 99 643 643 HOH HOH . E 4 HOH A 100 644 644 HOH HOH . E 4 HOH A 101 645 645 HOH HOH . E 4 HOH A 102 646 646 HOH HOH . E 4 HOH A 103 647 647 HOH HOH . E 4 HOH A 104 648 648 HOH HOH . E 4 HOH A 105 649 649 HOH HOH . E 4 HOH A 106 650 650 HOH HOH . E 4 HOH A 107 651 651 HOH HOH . E 4 HOH A 108 652 652 HOH HOH . E 4 HOH A 109 653 653 HOH HOH . E 4 HOH A 110 654 654 HOH HOH . E 4 HOH A 111 655 655 HOH HOH . E 4 HOH A 112 656 656 HOH HOH . E 4 HOH A 113 657 657 HOH HOH . E 4 HOH A 114 658 658 HOH HOH . E 4 HOH A 115 659 659 HOH HOH . E 4 HOH A 116 660 660 HOH HOH . E 4 HOH A 117 661 661 HOH HOH . E 4 HOH A 118 662 662 HOH HOH . E 4 HOH A 119 663 663 HOH HOH . E 4 HOH A 120 664 664 HOH HOH . E 4 HOH A 121 665 665 HOH HOH . E 4 HOH A 122 666 666 HOH HOH . E 4 HOH A 123 667 667 HOH HOH . E 4 HOH A 124 668 668 HOH HOH . E 4 HOH A 125 669 669 HOH HOH . E 4 HOH A 126 670 670 HOH HOH . E 4 HOH A 127 671 671 HOH HOH . E 4 HOH A 128 672 672 HOH HOH . E 4 HOH A 129 673 673 HOH HOH . E 4 HOH A 130 674 674 HOH HOH . E 4 HOH A 131 675 675 HOH HOH . E 4 HOH A 132 676 676 HOH HOH . E 4 HOH A 133 677 677 HOH HOH . E 4 HOH A 134 678 678 HOH HOH . E 4 HOH A 135 679 679 HOH HOH . E 4 HOH A 136 680 680 HOH HOH . E 4 HOH A 137 681 681 HOH HOH . E 4 HOH A 138 682 682 HOH HOH . E 4 HOH A 139 685 685 HOH HOH . E 4 HOH A 140 687 687 HOH HOH . E 4 HOH A 141 688 688 HOH HOH . E 4 HOH A 142 689 689 HOH HOH . E 4 HOH A 143 690 690 HOH HOH . E 4 HOH A 144 691 691 HOH HOH . E 4 HOH A 145 692 692 HOH HOH . E 4 HOH A 146 693 693 HOH HOH . E 4 HOH A 147 694 694 HOH HOH . E 4 HOH A 148 695 695 HOH HOH . E 4 HOH A 149 696 696 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -12.346 5.065 6.166 1 28.24 ? PA FAD 541 A 1 HETATM 2 O O1A FAD . . . B 2 -11.981 4.307 7.418 1 28.4 ? O1A FAD 541 A 1 HETATM 3 O O2A FAD . . . B 2 -12.222 4.225 4.923 1 30.99 ? O2A FAD 541 A 1 HETATM 4 O O5B FAD . . . B 2 -11.436 6.366 6.005 1 28.19 ? O5B FAD 541 A 1 HETATM 5 C C5B FAD . . . B 2 -11.09 7.17 7.104 1 25.68 ? C5B FAD 541 A 1 HETATM 6 C C4B FAD . . . B 2 -9.753 7.829 6.799 1 25.15 ? C4B FAD 541 A 1 HETATM 7 O O4B FAD . . . B 2 -9.614 8.963 7.639 1 24.18 ? O4B FAD 541 A 1 HETATM 8 C C3B FAD . . . B 2 -8.546 6.927 7.086 1 25.94 ? C3B FAD 541 A 1 HETATM 9 O O3B FAD . . . B 2 -7.769 6.731 5.902 1 26.71 ? O3B FAD 541 A 1 HETATM 10 C C2B FAD . . . B 2 -7.783 7.676 8.188 1 25.27 ? C2B FAD 541 A 1 HETATM 11 O O2B FAD . . . B 2 -6.373 7.541 8.103 1 25.41 ? O2B FAD 541 A 1 HETATM 12 C C1B FAD . . . B 2 -8.267 9.101 7.977 1 23.39 ? C1B FAD 541 A 1 HETATM 13 N N9A FAD . . . B 2 -8.196 9.942 9.165 1 24.07 ? N9A FAD 541 A 1 HETATM 14 C C8A FAD . . . B 2 -8.865 9.754 10.345 1 23.64 ? C8A FAD 541 A 1 HETATM 15 N N7A FAD . . . B 2 -8.508 10.752 11.178 1 23.37 ? N7A FAD 541 A 1 HETATM 16 C C5A FAD . . . B 2 -7.656 11.586 10.542 1 22.61 ? C5A FAD 541 A 1 HETATM 17 C C6A FAD . . . B 2 -7.019 12.755 10.922 1 23.38 ? C6A FAD 541 A 1 HETATM 18 N N6A FAD . . . B 2 -7.195 13.257 12.138 1 24.14 ? N6A FAD 541 A 1 HETATM 19 N N1A FAD . . . B 2 -6.182 13.397 10.03 1 23.5 ? N1A FAD 541 A 1 HETATM 20 C C2A FAD . . . B 2 -5.982 12.876 8.768 1 22.1 ? C2A FAD 541 A 1 HETATM 21 N N3A FAD . . . B 2 -6.613 11.718 8.411 1 22.11 ? N3A FAD 541 A 1 HETATM 22 C C4A FAD . . . B 2 -7.441 11.085 9.274 1 22.21 ? C4A FAD 541 A 1 HETATM 23 N N1 FAD . . . B 2 -18.237 -2.162 5.15 1 28.02 ? N1 FAD 541 A 1 HETATM 24 C C2 FAD . . . B 2 -19.205 -2.714 4.31 1 28.1 ? C2 FAD 541 A 1 HETATM 25 O O2 FAD . . . B 2 -20.263 -2.15 4.119 1 27.86 ? O2 FAD 541 A 1 HETATM 26 N N3 FAD . . . B 2 -18.981 -3.9 3.655 1 28.34 ? N3 FAD 541 A 1 HETATM 27 C C4 FAD . . . B 2 -17.781 -4.559 3.86 1 28.91 ? C4 FAD 541 A 1 HETATM 28 O O4 FAD . . . B 2 -17.591 -5.613 3.261 1 29.2 ? O4 FAD 541 A 1 HETATM 29 C C4X FAD . . . B 2 -16.797 -4.033 4.708 1 28.52 ? C4X FAD 541 A 1 HETATM 30 N N5 FAD . . . B 2 -15.58 -4.703 4.908 1 28.29 ? N5 FAD 541 A 1 HETATM 31 C C5X FAD . . . B 2 -14.626 -4.163 5.747 1 27.78 ? C5X FAD 541 A 1 HETATM 32 C C6 FAD . . . B 2 -13.419 -4.816 5.959 1 28.39 ? C6 FAD 541 A 1 HETATM 33 C C7 FAD . . . B 2 -12.457 -4.273 6.818 1 28.23 ? C7 FAD 541 A 1 HETATM 34 C C7M FAD . . . B 2 -11.16 -4.991 7.019 1 28.44 ? C7M FAD 541 A 1 HETATM 35 C C8 FAD . . . B 2 -12.713 -3.077 7.488 1 28.37 ? C8 FAD 541 A 1 HETATM 36 C C8M FAD . . . B 2 -11.707 -2.466 8.425 1 27.68 ? C8M FAD 541 A 1 HETATM 37 C C9 FAD . . . B 2 -13.936 -2.424 7.279 1 28.05 ? C9 FAD 541 A 1 HETATM 38 C C9A FAD . . . B 2 -14.88 -2.956 6.403 1 28.11 ? C9A FAD 541 A 1 HETATM 39 N N10 FAD . . . B 2 -16.08 -2.292 6.203 1 28.49 ? N10 FAD 541 A 1 HETATM 40 C C10 FAD . . . B 2 -17.039 -2.82 5.352 1 27.42 ? C10 FAD 541 A 1 HETATM 41 C C1' FAD . . . B 2 -16.284 -0.942 6.828 1 29.5 ? C1' FAD 541 A 1 HETATM 42 C C2' FAD . . . B 2 -15.548 0.133 6.035 1 29.59 ? C2' FAD 541 A 1 HETATM 43 O O2' FAD . . . B 2 -14.968 0.975 7.015 1 31.66 ? O2' FAD 541 A 1 HETATM 44 C C3' FAD . . . B 2 -16.484 0.956 5.137 1 29.55 ? C3' FAD 541 A 1 HETATM 45 O O3' FAD . . . B 2 -17.162 0.165 4.176 1 28.81 ? O3' FAD 541 A 1 HETATM 46 C C4' FAD . . . B 2 -15.837 2.136 4.41 1 28.72 ? C4' FAD 541 A 1 HETATM 47 O O4' FAD . . . B 2 -14.615 1.805 3.787 1 29.93 ? O4' FAD 541 A 1 HETATM 48 C C5' FAD . . . B 2 -15.62 3.317 5.347 1 29.88 ? C5' FAD 541 A 1 HETATM 49 O O5' FAD . . . B 2 -15.14 4.408 4.584 1 29.52 ? O5' FAD 541 A 1 HETATM 50 P P FAD . . . B 2 -14.93 5.855 5.252 1 29 ? P FAD 541 A 1 HETATM 51 O O1P FAD . . . B 2 -14.43 6.763 4.154 1 29.78 ? O1P FAD 541 A 1 HETATM 52 O O2P FAD . . . B 2 -16.136 6.424 5.967 1 26.15 ? O2P FAD 541 A 1 HETATM 53 O O3P FAD . . . B 2 -13.846 5.566 6.404 1 30.78 ? O3P FAD 541 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #