data_3GWO # _model_server_result.job_id qLcVq36U9AAKjNs9Dv63Aw _model_server_result.datetime_utc '2024-11-23 07:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":56}' # _entry.id 3GWO # _exptl.entry_id 3GWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.822 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GWO _cell.length_a 33.957 _cell.length_b 33.957 _cell.length_c 174.838 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id NA _struct_conn.ptnr1_label_comp_id NA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id NA _struct_conn.ptnr1_auth_seq_id 57 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 61 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.353 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H63 N O10' _chem_comp.formula_weight 597.822 _chem_comp.id JEF _chem_comp.mon_nstd_flag . _chem_comp.name "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JEFFAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O12 JEF sing 151 n n C38 H381 JEF sing 152 n n C38 H382 JEF sing 153 n n C38 H383 JEF sing 154 n n O12 C37 JEF sing 155 n n C37 C36 JEF sing 156 n n C37 H371 JEF sing 157 n n C37 H372 JEF sing 158 n n C36 O11 JEF sing 159 n n C36 H361 JEF sing 160 n n C36 H362 JEF sing 161 n n C33 C34 JEF sing 162 n n C33 C32 JEF sing 163 n n C33 H33 JEF sing 164 n n C34 H341 JEF sing 165 n n C34 H342 JEF sing 166 n n C34 H343 JEF sing 167 n n C32 O10 JEF sing 168 n n C32 H321 JEF sing 169 n n C32 H322 JEF sing 170 n n O10 C19 JEF sing 171 n n C19 C40 JEF sing 172 n n C19 C20 JEF sing 173 n n C19 H19 JEF sing 174 n n C40 H401 JEF sing 175 n n C40 H402 JEF sing 176 n n C40 H403 JEF sing 177 n n C20 O JEF sing 178 n n C20 H201 JEF sing 179 n n C20 H202 JEF sing 180 n n O C JEF sing 181 n n C C18 JEF sing 182 n n C C17 JEF sing 183 n n C H JEF sing 184 n n C18 H181 JEF sing 185 n n C18 H182 JEF sing 186 n n C18 H183 JEF sing 187 n n C17 OH JEF sing 188 n n C17 H171 JEF sing 189 n n C17 H172 JEF sing 190 n n OH C2 JEF sing 191 n n C2 C1 JEF sing 192 n n C2 C3 JEF sing 193 n n C2 H2 JEF sing 194 n n C1 H11A JEF sing 195 n n C1 H12 JEF sing 196 n n C1 H13A JEF sing 197 n n C3 O2 JEF sing 198 n n C3 H31 JEF sing 199 n n C3 H32 JEF sing 200 n n O2 C5 JEF sing 201 n n C5 C6 JEF sing 202 n n C5 C4 JEF sing 203 n n C5 H5 JEF sing 204 n n C6 H61 JEF sing 205 n n C6 H62 JEF sing 206 n n C6 H63 JEF sing 207 n n C4 O3 JEF sing 208 n n C4 H41 JEF sing 209 n n C4 H42 JEF sing 210 n n O3 C7 JEF sing 211 n n C7 C9 JEF sing 212 n n C7 C8 JEF sing 213 n n C7 H7 JEF sing 214 n n C9 H91 JEF sing 215 n n C9 H92 JEF sing 216 n n C9 H93 JEF sing 217 n n C8 O4 JEF sing 218 n n C8 H81 JEF sing 219 n n C8 H82 JEF sing 220 n n O4 C11 JEF sing 221 n n C11 C12 JEF sing 222 n n C11 C10 JEF sing 223 n n C11 H11 JEF sing 224 n n C12 H121 JEF sing 225 n n C12 H122 JEF sing 226 n n C12 H123 JEF sing 227 n n C10 O5 JEF sing 228 n n C10 H101 JEF sing 229 n n C10 H102 JEF sing 230 n n O5 C13 JEF sing 231 n n C13 C15 JEF sing 232 n n C13 C14 JEF sing 233 n n C13 H13 JEF sing 234 n n C15 H151 JEF sing 235 n n C15 H152 JEF sing 236 n n C15 H153 JEF sing 237 n n C14 O6 JEF sing 238 n n C14 H141 JEF sing 239 n n C14 H142 JEF sing 240 n n O6 C16 JEF sing 241 n n C16 C30 JEF sing 242 n n C16 H161 JEF sing 243 n n C16 H162 JEF sing 244 n n C30 C31 JEF sing 245 n n C30 N1 JEF sing 246 n n C30 H30 JEF sing 247 n n C31 H311 JEF sing 248 n n C31 H312 JEF sing 249 n n C31 H313 JEF sing 250 n n N1 HN11 JEF sing 251 n n N1 HN12 JEF sing 252 n n C33 O11 JEF sing 253 n n # _atom_sites.entry_id 3GWO _atom_sites.fract_transf_matrix[1][1] 0.029449 _atom_sites.fract_transf_matrix[1][2] 0.017002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JEF A 1 55 1 JEF JEF . D 2 JEF A 1 56 2 JEF JEF . E 3 NA A 1 57 1 NA NA . F 4 HOH A 1 58 2 HOH HOH . F 4 HOH A 2 59 3 HOH HOH . F 4 HOH A 3 60 4 HOH HOH . F 4 HOH A 4 61 5 HOH HOH . F 4 HOH A 5 62 6 HOH HOH . F 4 HOH A 6 63 7 HOH HOH . F 4 HOH A 7 64 9 HOH HOH . F 4 HOH A 8 65 10 HOH HOH . F 4 HOH A 9 66 11 HOH HOH . F 4 HOH A 10 67 13 HOH HOH . F 4 HOH A 11 68 14 HOH HOH . F 4 HOH A 12 69 15 HOH HOH . F 4 HOH A 13 70 17 HOH HOH . F 4 HOH A 14 71 18 HOH HOH . F 4 HOH A 15 72 20 HOH HOH . F 4 HOH A 16 73 21 HOH HOH . F 4 HOH A 17 74 22 HOH HOH . F 4 HOH A 18 75 23 HOH HOH . F 4 HOH A 19 76 24 HOH HOH . F 4 HOH A 20 77 25 HOH HOH . F 4 HOH A 21 78 26 HOH HOH . F 4 HOH A 22 79 27 HOH HOH . F 4 HOH A 23 80 29 HOH HOH . F 4 HOH A 24 81 30 HOH HOH . F 4 HOH A 25 82 31 HOH HOH . F 4 HOH A 26 83 32 HOH HOH . F 4 HOH A 27 84 33 HOH HOH . F 4 HOH A 28 85 34 HOH HOH . F 4 HOH A 29 86 36 HOH HOH . F 4 HOH A 30 87 37 HOH HOH . F 4 HOH A 31 88 39 HOH HOH . F 4 HOH A 32 89 40 HOH HOH . F 4 HOH A 33 90 42 HOH HOH . F 4 HOH A 34 91 43 HOH HOH . F 4 HOH A 35 92 44 HOH HOH . F 4 HOH A 36 93 47 HOH HOH . G 4 HOH B 1 55 1 HOH HOH . G 4 HOH B 2 56 8 HOH HOH . G 4 HOH B 3 57 12 HOH HOH . G 4 HOH B 4 58 16 HOH HOH . G 4 HOH B 5 59 19 HOH HOH . G 4 HOH B 6 60 28 HOH HOH . G 4 HOH B 7 61 35 HOH HOH . G 4 HOH B 8 62 38 HOH HOH . G 4 HOH B 9 63 41 HOH HOH . G 4 HOH B 10 64 45 HOH HOH . G 4 HOH B 11 65 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH JEF . . . D 2 5.533 -8.582 -5.473 1 67.68 ? OH JEF 56 A 1 HETATM 2 C C2 JEF . . . D 2 4.467 -7.64 -5.397 1 67.6 ? C2 JEF 56 A 1 HETATM 3 C C1 JEF . . . D 2 3.147 -8.387 -5.554 1 67.91 ? C1 JEF 56 A 1 HETATM 4 C C3 JEF . . . D 2 4.487 -6.801 -4.106 1 67.66 ? C3 JEF 56 A 1 HETATM 5 O O2 JEF . . . D 2 5.188 -7.367 -2.981 1 66.93 ? O2 JEF 56 A 1 HETATM 6 C C5 JEF . . . D 2 5.48 -6.343 -2.016 1 65.2 ? C5 JEF 56 A 1 HETATM 7 C C6 JEF . . . D 2 6.977 -6.11 -1.917 1 64.76 ? C6 JEF 56 A 1 HETATM 8 C C4 JEF . . . D 2 4.893 -6.64 -0.642 1 65.44 ? C4 JEF 56 A 1 HETATM 9 O O3 JEF . . . D 2 5.602 -7.66 0.063 1 66.15 ? O3 JEF 56 A 1 HETATM 10 C C7 JEF . . . D 2 5.606 -7.55 1.501 1 66.26 ? C7 JEF 56 A 1 HETATM 11 C C9 JEF . . . D 2 4.99 -6.234 1.99 1 67.65 ? C9 JEF 56 A 1 HETATM 12 C C8 JEF . . . D 2 4.938 -8.761 2.149 1 66.79 ? C8 JEF 56 A 1 HETATM 13 O O4 JEF . . . D 2 4.354 -8.468 3.427 1 68.04 ? O4 JEF 56 A 1 HETATM 14 C C11 JEF . . . D 2 4.658 -9.491 4.381 1 67.49 ? C11 JEF 56 A 1 HETATM 15 C C12 JEF . . . D 2 3.884 -9.3 5.667 1 67.55 ? C12 JEF 56 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #