data_3GWS # _model_server_result.job_id NuNlRVQKJAhBnxq57YFFrw _model_server_result.datetime_utc '2024-11-16 06:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3GWS # _exptl.entry_id 3GWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GWS _cell.length_a 68.974 _cell.length_b 68.974 _cell.length_c 131.247 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 92 X PHE 293 1_555 A N CAS 93 X CAS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CAS 93 X CAS 294 1_555 A N GLU 94 X GLU 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 186 X ALA 387 1_555 A N CAS 187 X CAS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CAS 187 X CAS 388 1_555 A N VAL 188 X VAL 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ALA 232 X ALA 433 1_555 A N CAS 233 X CAS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C CAS 233 X CAS 434 1_555 A N HIS 234 X HIS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 311 n y C1 C11 T3 sing 312 n y C1 C13 T3 sing 313 n n C2 C4 T3 doub 314 n y C2 C12 T3 sing 315 n y C2 O2 T3 sing 316 n n C3 C5 T3 sing 317 n y C3 HC3 T3 sing 318 n n C4 C6 T3 sing 319 n y C4 HC4 T3 sing 320 n n C5 C7 T3 doub 321 n y C5 I1 T3 sing 322 n n C6 C8 T3 doub 323 n y C6 I2 T3 sing 324 n n C7 C9 T3 sing 325 n y C7 O2 T3 sing 326 n n C8 C10 T3 sing 327 n y C8 O1 T3 sing 328 n n C9 C11 T3 doub 329 n y C9 I3 T3 sing 330 n n C10 C12 T3 doub 331 n y C10 HC10 T3 sing 332 n n C11 HC11 T3 sing 333 n n C12 HC12 T3 sing 334 n n C13 CA T3 sing 335 n n C13 H131 T3 sing 336 n n C13 H132 T3 sing 337 n n CA C T3 sing 338 n n CA N T3 sing 339 n n CA HA T3 sing 340 n n C OXT T3 sing 341 n n C O T3 doub 342 n n N H2 T3 sing 343 n n N H T3 sing 344 n n O1 HO1 T3 sing 345 n n OXT HXT T3 sing 346 n n # _atom_sites.entry_id 3GWS _atom_sites.fract_transf_matrix[1][1] 0.014498 _atom_sites.fract_transf_matrix[1][2] 0.008371 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3 X 1 500 500 T3 T3 . C 3 HOH X 1 1 1 HOH HOH . C 3 HOH X 2 2 2 HOH HOH . C 3 HOH X 3 3 3 HOH HOH . C 3 HOH X 4 4 4 HOH HOH . C 3 HOH X 5 5 5 HOH HOH . C 3 HOH X 6 6 6 HOH HOH . C 3 HOH X 7 7 7 HOH HOH . C 3 HOH X 8 8 8 HOH HOH . C 3 HOH X 9 9 9 HOH HOH . C 3 HOH X 10 10 10 HOH HOH . C 3 HOH X 11 11 11 HOH HOH . C 3 HOH X 12 12 12 HOH HOH . C 3 HOH X 13 13 13 HOH HOH . C 3 HOH X 14 14 14 HOH HOH . C 3 HOH X 15 15 15 HOH HOH . C 3 HOH X 16 16 16 HOH HOH . C 3 HOH X 17 17 17 HOH HOH . C 3 HOH X 18 18 18 HOH HOH . C 3 HOH X 19 19 19 HOH HOH . C 3 HOH X 20 20 20 HOH HOH . C 3 HOH X 21 21 21 HOH HOH . C 3 HOH X 22 22 22 HOH HOH . C 3 HOH X 23 23 23 HOH HOH . C 3 HOH X 24 24 24 HOH HOH . C 3 HOH X 25 25 25 HOH HOH . C 3 HOH X 26 26 26 HOH HOH . C 3 HOH X 27 27 27 HOH HOH . C 3 HOH X 28 28 28 HOH HOH . C 3 HOH X 29 29 29 HOH HOH . C 3 HOH X 30 30 30 HOH HOH . C 3 HOH X 31 31 31 HOH HOH . C 3 HOH X 32 32 32 HOH HOH . C 3 HOH X 33 33 33 HOH HOH . C 3 HOH X 34 34 34 HOH HOH . C 3 HOH X 35 35 35 HOH HOH . C 3 HOH X 36 36 36 HOH HOH . C 3 HOH X 37 37 37 HOH HOH . C 3 HOH X 38 38 38 HOH HOH . C 3 HOH X 39 39 39 HOH HOH . C 3 HOH X 40 40 40 HOH HOH . C 3 HOH X 41 41 41 HOH HOH . C 3 HOH X 42 42 42 HOH HOH . C 3 HOH X 43 43 43 HOH HOH . C 3 HOH X 44 44 44 HOH HOH . C 3 HOH X 45 45 45 HOH HOH . C 3 HOH X 46 46 46 HOH HOH . C 3 HOH X 47 47 47 HOH HOH . C 3 HOH X 48 48 48 HOH HOH . C 3 HOH X 49 49 49 HOH HOH . C 3 HOH X 50 50 50 HOH HOH . C 3 HOH X 51 51 51 HOH HOH . C 3 HOH X 52 52 52 HOH HOH . C 3 HOH X 53 53 53 HOH HOH . C 3 HOH X 54 54 54 HOH HOH . C 3 HOH X 55 55 55 HOH HOH . C 3 HOH X 56 56 56 HOH HOH . C 3 HOH X 57 57 57 HOH HOH . C 3 HOH X 58 58 58 HOH HOH . C 3 HOH X 59 59 59 HOH HOH . C 3 HOH X 60 60 60 HOH HOH . C 3 HOH X 61 61 61 HOH HOH . C 3 HOH X 62 62 62 HOH HOH . C 3 HOH X 63 63 63 HOH HOH . C 3 HOH X 64 64 64 HOH HOH . C 3 HOH X 65 65 65 HOH HOH . C 3 HOH X 66 66 66 HOH HOH . C 3 HOH X 67 67 67 HOH HOH . C 3 HOH X 68 68 68 HOH HOH . C 3 HOH X 69 69 69 HOH HOH . C 3 HOH X 70 70 70 HOH HOH . C 3 HOH X 71 71 71 HOH HOH . C 3 HOH X 72 72 72 HOH HOH . C 3 HOH X 73 73 73 HOH HOH . C 3 HOH X 74 74 74 HOH HOH . C 3 HOH X 75 75 75 HOH HOH . C 3 HOH X 76 76 76 HOH HOH . C 3 HOH X 77 77 77 HOH HOH . C 3 HOH X 78 78 78 HOH HOH . C 3 HOH X 79 79 79 HOH HOH . C 3 HOH X 80 80 80 HOH HOH . C 3 HOH X 81 81 81 HOH HOH . C 3 HOH X 82 82 82 HOH HOH . C 3 HOH X 83 83 83 HOH HOH . C 3 HOH X 84 84 84 HOH HOH . C 3 HOH X 85 85 85 HOH HOH . C 3 HOH X 86 86 86 HOH HOH . C 3 HOH X 87 87 87 HOH HOH . C 3 HOH X 88 88 88 HOH HOH . C 3 HOH X 89 89 89 HOH HOH . C 3 HOH X 90 90 90 HOH HOH . C 3 HOH X 91 91 91 HOH HOH . C 3 HOH X 92 92 92 HOH HOH . C 3 HOH X 93 93 93 HOH HOH . C 3 HOH X 94 94 94 HOH HOH . C 3 HOH X 95 95 95 HOH HOH . C 3 HOH X 96 96 96 HOH HOH . C 3 HOH X 97 97 97 HOH HOH . C 3 HOH X 98 98 98 HOH HOH . C 3 HOH X 99 99 99 HOH HOH . C 3 HOH X 100 100 100 HOH HOH . C 3 HOH X 101 101 101 HOH HOH . C 3 HOH X 102 102 102 HOH HOH . C 3 HOH X 103 103 103 HOH HOH . C 3 HOH X 104 104 104 HOH HOH . C 3 HOH X 105 105 105 HOH HOH . C 3 HOH X 106 106 106 HOH HOH . C 3 HOH X 107 107 107 HOH HOH . C 3 HOH X 108 108 108 HOH HOH . C 3 HOH X 109 109 109 HOH HOH . C 3 HOH X 110 110 110 HOH HOH . C 3 HOH X 111 111 111 HOH HOH . C 3 HOH X 112 112 112 HOH HOH . C 3 HOH X 113 113 113 HOH HOH . C 3 HOH X 114 114 114 HOH HOH . C 3 HOH X 115 115 115 HOH HOH . C 3 HOH X 116 116 116 HOH HOH . C 3 HOH X 117 117 117 HOH HOH . C 3 HOH X 118 118 118 HOH HOH . C 3 HOH X 119 119 119 HOH HOH . C 3 HOH X 120 120 120 HOH HOH . C 3 HOH X 121 121 121 HOH HOH . C 3 HOH X 122 122 122 HOH HOH . C 3 HOH X 123 123 123 HOH HOH . C 3 HOH X 124 124 124 HOH HOH . C 3 HOH X 125 125 125 HOH HOH . C 3 HOH X 126 126 126 HOH HOH . C 3 HOH X 127 127 127 HOH HOH . C 3 HOH X 128 128 128 HOH HOH . C 3 HOH X 129 129 129 HOH HOH . C 3 HOH X 130 130 130 HOH HOH . C 3 HOH X 131 131 131 HOH HOH . C 3 HOH X 132 132 132 HOH HOH . C 3 HOH X 133 133 133 HOH HOH . C 3 HOH X 134 134 134 HOH HOH . C 3 HOH X 135 135 135 HOH HOH . C 3 HOH X 136 136 136 HOH HOH . C 3 HOH X 137 137 137 HOH HOH . C 3 HOH X 138 138 138 HOH HOH . C 3 HOH X 139 139 139 HOH HOH . C 3 HOH X 140 140 140 HOH HOH . C 3 HOH X 141 141 141 HOH HOH . C 3 HOH X 142 142 142 HOH HOH . C 3 HOH X 143 143 143 HOH HOH . C 3 HOH X 144 144 144 HOH HOH . C 3 HOH X 145 145 145 HOH HOH . C 3 HOH X 146 146 146 HOH HOH . C 3 HOH X 147 147 147 HOH HOH . C 3 HOH X 148 148 148 HOH HOH . C 3 HOH X 149 149 149 HOH HOH . C 3 HOH X 150 150 150 HOH HOH . C 3 HOH X 151 151 151 HOH HOH . C 3 HOH X 152 152 152 HOH HOH . C 3 HOH X 153 153 153 HOH HOH . C 3 HOH X 154 154 154 HOH HOH . C 3 HOH X 155 155 155 HOH HOH . C 3 HOH X 156 156 156 HOH HOH . C 3 HOH X 157 157 157 HOH HOH . C 3 HOH X 158 158 158 HOH HOH . C 3 HOH X 159 159 159 HOH HOH . C 3 HOH X 160 160 160 HOH HOH . C 3 HOH X 161 161 161 HOH HOH . C 3 HOH X 162 162 162 HOH HOH . C 3 HOH X 163 163 163 HOH HOH . C 3 HOH X 164 164 164 HOH HOH . C 3 HOH X 165 165 165 HOH HOH . C 3 HOH X 166 166 166 HOH HOH . C 3 HOH X 167 167 167 HOH HOH . C 3 HOH X 168 168 168 HOH HOH . C 3 HOH X 169 169 169 HOH HOH . C 3 HOH X 170 170 170 HOH HOH . C 3 HOH X 171 171 171 HOH HOH . C 3 HOH X 172 172 172 HOH HOH . C 3 HOH X 173 173 173 HOH HOH . C 3 HOH X 174 174 174 HOH HOH . C 3 HOH X 175 175 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . B 2 6.754 20.83 27.533 1 33.76 ? C1 T3 500 X 1 HETATM 2 C C2 T3 . . . B 2 3.47 18.06 30.034 1 29.57 ? C2 T3 500 X 1 HETATM 3 C C3 T3 . . . B 2 7.014 20.406 28.932 1 30.78 ? C3 T3 500 X 1 HETATM 4 C C4 T3 . . . B 2 3.084 17.185 31.101 1 27.06 ? C4 T3 500 X 1 HETATM 5 C C5 T3 . . . B 2 6.292 19.39 29.482 1 33.89 ? C5 T3 500 X 1 HETATM 6 C C6 T3 . . . B 2 1.957 17.476 31.888 1 31.2 ? C6 T3 500 X 1 HETATM 7 C C7 T3 . . . B 2 5.29 18.757 28.718 1 26.08 ? C7 T3 500 X 1 HETATM 8 C C8 T3 . . . B 2 1.219 18.598 31.629 1 28.73 ? C8 T3 500 X 1 HETATM 9 C C9 T3 . . . B 2 5.045 19.158 27.362 1 33.87 ? C9 T3 500 X 1 HETATM 10 C C10 T3 . . . B 2 1.614 19.497 30.522 1 30.43 ? C10 T3 500 X 1 HETATM 11 C C11 T3 . . . B 2 5.793 20.209 26.787 1 34.08 ? C11 T3 500 X 1 HETATM 12 C C12 T3 . . . B 2 2.707 19.215 29.758 1 32.53 ? C12 T3 500 X 1 HETATM 13 C C13 T3 . . . B 2 7.575 21.956 26.916 1 31.49 ? C13 T3 500 X 1 HETATM 14 C CA T3 . . . B 2 8.251 21.65 25.579 1 29.86 ? CA T3 500 X 1 HETATM 15 C C T3 . . . B 2 9.29 22.691 25.204 1 29.1 ? C T3 500 X 1 HETATM 16 I I1 T3 . . . B 2 6.677 18.782 31.469 1 38.71 ? I1 T3 500 X 1 HETATM 17 I I2 T3 . . . B 2 1.459 16.147 33.457 1 41.51 ? I2 T3 500 X 1 HETATM 18 I I3 T3 . . . B 2 3.568 18.157 26.235 1 37.28 ? I3 T3 500 X 1 HETATM 19 N N T3 . . . B 2 8.746 20.294 25.459 1 29.5 ? N T3 500 X 1 HETATM 20 O O1 T3 . . . B 2 0.079 18.897 32.388 1 29.07 ? O1 T3 500 X 1 HETATM 21 O O2 T3 . . . B 2 4.566 17.689 29.245 1 25.15 ? O2 T3 500 X 1 HETATM 22 O OXT T3 . . . B 2 10.235 22.377 24.564 1 30.16 ? OXT T3 500 X 1 HETATM 23 O O T3 . . . B 2 9.092 24.014 25.611 1 30.19 ? O T3 500 X 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #