data_3GWU # _model_server_result.job_id DxygkCqH0dBOJy7Uhp4sjA _model_server_result.datetime_utc '2024-11-28 14:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":752}' # _entry.id 3GWU # _exptl.entry_id 3GWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.65 _cell.angle_gamma 90 _cell.entry_id 3GWU _cell.length_a 88.338 _cell.length_b 86.85 _cell.length_c 81.308 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.333117 0 80.912995 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 B OXT LEU . A LEU 601 1_555 D NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GWU _atom_sites.fract_transf_matrix[1][1] 0.01132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEU A 1 601 601 LEU LEU . C 3 NA A 1 751 751 NA NA . D 3 NA A 1 752 752 NA NA . E 4 SRE A 1 801 801 SRE SRE . F 5 HOH A 1 901 901 HOH HOH . F 5 HOH A 2 902 902 HOH HOH . F 5 HOH A 3 903 903 HOH HOH . F 5 HOH A 4 904 904 HOH HOH . F 5 HOH A 5 905 905 HOH HOH . F 5 HOH A 6 906 906 HOH HOH . F 5 HOH A 7 907 907 HOH HOH . F 5 HOH A 8 908 908 HOH HOH . F 5 HOH A 9 909 909 HOH HOH . F 5 HOH A 10 910 910 HOH HOH . F 5 HOH A 11 911 911 HOH HOH . F 5 HOH A 12 912 912 HOH HOH . F 5 HOH A 13 913 913 HOH HOH . F 5 HOH A 14 914 914 HOH HOH . F 5 HOH A 15 915 915 HOH HOH . F 5 HOH A 16 916 916 HOH HOH . F 5 HOH A 17 917 917 HOH HOH . F 5 HOH A 18 918 918 HOH HOH . F 5 HOH A 19 919 919 HOH HOH . F 5 HOH A 20 920 920 HOH HOH . F 5 HOH A 21 921 921 HOH HOH . F 5 HOH A 22 922 922 HOH HOH . F 5 HOH A 23 923 923 HOH HOH . F 5 HOH A 24 924 924 HOH HOH . F 5 HOH A 25 925 925 HOH HOH . F 5 HOH A 26 926 926 HOH HOH . F 5 HOH A 27 927 927 HOH HOH . F 5 HOH A 28 928 928 HOH HOH . F 5 HOH A 29 929 929 HOH HOH . F 5 HOH A 30 930 930 HOH HOH . F 5 HOH A 31 931 931 HOH HOH . F 5 HOH A 32 932 932 HOH HOH . F 5 HOH A 33 933 933 HOH HOH . F 5 HOH A 34 934 934 HOH HOH . F 5 HOH A 35 935 935 HOH HOH . F 5 HOH A 36 936 936 HOH HOH . F 5 HOH A 37 937 937 HOH HOH . F 5 HOH A 38 938 938 HOH HOH . F 5 HOH A 39 939 939 HOH HOH . F 5 HOH A 40 940 940 HOH HOH . F 5 HOH A 41 941 941 HOH HOH . F 5 HOH A 42 942 942 HOH HOH . F 5 HOH A 43 943 943 HOH HOH . F 5 HOH A 44 944 944 HOH HOH . F 5 HOH A 45 945 945 HOH HOH . F 5 HOH A 46 946 946 HOH HOH . F 5 HOH A 47 947 947 HOH HOH . F 5 HOH A 48 948 948 HOH HOH . F 5 HOH A 49 949 949 HOH HOH . F 5 HOH A 50 950 950 HOH HOH . F 5 HOH A 51 951 951 HOH HOH . F 5 HOH A 52 952 952 HOH HOH . F 5 HOH A 53 953 953 HOH HOH . F 5 HOH A 54 954 954 HOH HOH . F 5 HOH A 55 955 955 HOH HOH . F 5 HOH A 56 956 956 HOH HOH . F 5 HOH A 57 957 957 HOH HOH . F 5 HOH A 58 958 958 HOH HOH . F 5 HOH A 59 959 959 HOH HOH . F 5 HOH A 60 960 960 HOH HOH . F 5 HOH A 61 961 961 HOH HOH . F 5 HOH A 62 962 962 HOH HOH . F 5 HOH A 63 963 963 HOH HOH . F 5 HOH A 64 964 964 HOH HOH . F 5 HOH A 65 965 965 HOH HOH . F 5 HOH A 66 966 966 HOH HOH . F 5 HOH A 67 967 967 HOH HOH . F 5 HOH A 68 968 968 HOH HOH . F 5 HOH A 69 969 969 HOH HOH . F 5 HOH A 70 970 970 HOH HOH . F 5 HOH A 71 971 971 HOH HOH . F 5 HOH A 72 972 972 HOH HOH . F 5 HOH A 73 973 973 HOH HOH . F 5 HOH A 74 974 974 HOH HOH . F 5 HOH A 75 975 975 HOH HOH . F 5 HOH A 76 976 976 HOH HOH . F 5 HOH A 77 977 977 HOH HOH . F 5 HOH A 78 978 978 HOH HOH . F 5 HOH A 79 979 979 HOH HOH . F 5 HOH A 80 980 980 HOH HOH . F 5 HOH A 81 981 981 HOH HOH . F 5 HOH A 82 982 982 HOH HOH . F 5 HOH A 83 983 983 HOH HOH . F 5 HOH A 84 984 984 HOH HOH . F 5 HOH A 85 985 985 HOH HOH . F 5 HOH A 86 986 986 HOH HOH . F 5 HOH A 87 987 987 HOH HOH . F 5 HOH A 88 988 988 HOH HOH . F 5 HOH A 89 989 989 HOH HOH . F 5 HOH A 90 990 990 HOH HOH . F 5 HOH A 91 991 991 HOH HOH . F 5 HOH A 92 992 992 HOH HOH . F 5 HOH A 93 993 993 HOH HOH . F 5 HOH A 94 994 994 HOH HOH . F 5 HOH A 95 995 995 HOH HOH . F 5 HOH A 96 996 996 HOH HOH . F 5 HOH A 97 997 997 HOH HOH . F 5 HOH A 98 998 998 HOH HOH . F 5 HOH A 99 999 999 HOH HOH . F 5 HOH A 100 1000 1000 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.167 _atom_site.Cartn_y 31.182 _atom_site.Cartn_z 15.95 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 752 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #