data_3GWV # _model_server_result.job_id PmvZl8kui982Es8ci5nUsQ _model_server_result.datetime_utc '2024-10-14 01:19:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3GWV # _exptl.entry_id 3GWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.67 _cell.angle_gamma 90 _cell.entry_id 3GWV _cell.length_a 87.813 _cell.length_b 87.39 _cell.length_c 81.154 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.795088 0 80.756949 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc11 B OXT LEU . A LEU 601 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 160 n n N H LEU sing 161 n n N H2 LEU sing 162 n n CA C LEU sing 163 n n CA CB LEU sing 164 n n CA HA LEU sing 165 n n C O LEU doub 166 n n C OXT LEU sing 167 n n CB CG LEU sing 168 n n CB HB2 LEU sing 169 n n CB HB3 LEU sing 170 n n CG CD1 LEU sing 171 n n CG CD2 LEU sing 172 n n CG HG LEU sing 173 n n CD1 HD11 LEU sing 174 n n CD1 HD12 LEU sing 175 n n CD1 HD13 LEU sing 176 n n CD2 HD21 LEU sing 177 n n CD2 HD22 LEU sing 178 n n CD2 HD23 LEU sing 179 n n OXT HXT LEU sing 180 n n # _atom_sites.entry_id 3GWV _atom_sites.fract_transf_matrix[1][1] 0.011388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEU A 1 601 601 LEU LEU . C 3 NA A 1 701 701 NA NA . D 3 NA A 1 702 702 NA NA . E 4 RFX A 1 801 801 RFX RFX . F 5 HOH A 1 901 901 HOH HOH . F 5 HOH A 2 902 902 HOH HOH . F 5 HOH A 3 903 903 HOH HOH . F 5 HOH A 4 904 904 HOH HOH . F 5 HOH A 5 905 905 HOH HOH . F 5 HOH A 6 906 906 HOH HOH . F 5 HOH A 7 907 907 HOH HOH . F 5 HOH A 8 908 908 HOH HOH . F 5 HOH A 9 909 909 HOH HOH . F 5 HOH A 10 910 910 HOH HOH . F 5 HOH A 11 911 911 HOH HOH . F 5 HOH A 12 912 912 HOH HOH . F 5 HOH A 13 913 913 HOH HOH . F 5 HOH A 14 914 914 HOH HOH . F 5 HOH A 15 915 915 HOH HOH . F 5 HOH A 16 916 916 HOH HOH . F 5 HOH A 17 917 917 HOH HOH . F 5 HOH A 18 918 918 HOH HOH . F 5 HOH A 19 919 919 HOH HOH . F 5 HOH A 20 920 920 HOH HOH . F 5 HOH A 21 921 921 HOH HOH . F 5 HOH A 22 922 922 HOH HOH . F 5 HOH A 23 923 923 HOH HOH . F 5 HOH A 24 924 924 HOH HOH . F 5 HOH A 25 925 925 HOH HOH . F 5 HOH A 26 926 926 HOH HOH . F 5 HOH A 27 927 927 HOH HOH . F 5 HOH A 28 928 928 HOH HOH . F 5 HOH A 29 929 929 HOH HOH . F 5 HOH A 30 930 930 HOH HOH . F 5 HOH A 31 931 931 HOH HOH . F 5 HOH A 32 932 932 HOH HOH . F 5 HOH A 33 933 933 HOH HOH . F 5 HOH A 34 934 934 HOH HOH . F 5 HOH A 35 935 935 HOH HOH . F 5 HOH A 36 936 936 HOH HOH . F 5 HOH A 37 937 937 HOH HOH . F 5 HOH A 38 938 938 HOH HOH . F 5 HOH A 39 939 939 HOH HOH . F 5 HOH A 40 940 940 HOH HOH . F 5 HOH A 41 941 941 HOH HOH . F 5 HOH A 42 942 942 HOH HOH . F 5 HOH A 43 943 943 HOH HOH . F 5 HOH A 44 944 944 HOH HOH . F 5 HOH A 45 945 945 HOH HOH . F 5 HOH A 46 946 946 HOH HOH . F 5 HOH A 47 947 947 HOH HOH . F 5 HOH A 48 948 948 HOH HOH . F 5 HOH A 49 949 949 HOH HOH . F 5 HOH A 50 950 950 HOH HOH . F 5 HOH A 51 951 951 HOH HOH . F 5 HOH A 52 952 952 HOH HOH . F 5 HOH A 53 953 953 HOH HOH . F 5 HOH A 54 954 954 HOH HOH . F 5 HOH A 55 955 955 HOH HOH . F 5 HOH A 56 956 956 HOH HOH . F 5 HOH A 57 957 957 HOH HOH . F 5 HOH A 58 958 958 HOH HOH . F 5 HOH A 59 959 959 HOH HOH . F 5 HOH A 60 960 960 HOH HOH . F 5 HOH A 61 961 961 HOH HOH . F 5 HOH A 62 962 962 HOH HOH . F 5 HOH A 63 963 963 HOH HOH . F 5 HOH A 64 964 964 HOH HOH . F 5 HOH A 65 965 965 HOH HOH . F 5 HOH A 66 966 966 HOH HOH . F 5 HOH A 67 967 967 HOH HOH . F 5 HOH A 68 968 968 HOH HOH . F 5 HOH A 69 969 969 HOH HOH . F 5 HOH A 70 970 970 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . B 2 24.358 32.745 18.929 1 19.83 ? N LEU 601 A 1 HETATM 2 C CA LEU . . . B 2 25.664 32.019 18.898 1 20.12 ? CA LEU 601 A 1 HETATM 3 C C LEU . . . B 2 25.561 30.689 18.167 1 20.4 ? C LEU 601 A 1 HETATM 4 O O LEU . . . B 2 26.575 29.994 17.971 1 20.77 ? O LEU 601 A 1 HETATM 5 C CB LEU . . . B 2 26.186 31.772 20.319 1 20.27 ? CB LEU 601 A 1 HETATM 6 C CG LEU . . . B 2 26.396 32.925 21.304 1 20.09 ? CG LEU 601 A 1 HETATM 7 C CD1 LEU . . . B 2 27.032 32.368 22.566 1 21.35 ? CD1 LEU 601 A 1 HETATM 8 C CD2 LEU . . . B 2 27.259 34.035 20.72 1 19.33 ? CD2 LEU 601 A 1 HETATM 9 O OXT LEU . . . B 2 24.465 30.275 17.768 1 20.25 ? OXT LEU 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 558 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #