data_3GWX
#
_model_server_result.job_id            rJ2CWeZc4Y4mHZjuMcYCNw 
_model_server_result.datetime_utc      '2024-11-26 10:14:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gwx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3}' 
#
_entry.id    3GWX 
#
_exptl.entry_id    3GWX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.451 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5,8,11,14,17-EICOSAPENTAENOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.89 
_cell.angle_gamma         90 
_cell.entry_id            3GWX 
_cell.length_a            39.379 
_cell.length_b            95.543 
_cell.length_c            96.181 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GWX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H30 O2' 
_chem_comp.formula_weight    302.451 
_chem_comp.id                EPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5,8,11,14,17-EICOSAPENTAENOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 OA EPA sing 83 n n 
C1 OB EPA doub 84 n n 
C1 C2 EPA sing 85 n n 
OA HOA EPA sing 86 n n 
C2 C3 EPA sing 87 n n 
C2 H21 EPA sing 88 n n 
C2 H22 EPA sing 89 n n 
C3 C4 EPA sing 90 n n 
C3 H31 EPA sing 91 n n 
C3 H32 EPA sing 92 n n 
C4 C5 EPA sing 93 n n 
C4 H41 EPA sing 94 n n 
C4 H42 EPA sing 95 n n 
C5 C6 EPA doub 96 z n 
C5 H51 EPA sing 97 n n 
C6 C7 EPA sing 98 n n 
C6 H61 EPA sing 99 n n 
C7 C8 EPA sing 100 n n 
C7 H71 EPA sing 101 n n 
C7 H72 EPA sing 102 n n 
C8 C9 EPA doub 103 z n 
C8 H81 EPA sing 104 n n 
C9 C10 EPA sing 105 n n 
C9 H91 EPA sing 106 n n 
C10 C11 EPA sing 107 n n 
C10 H101 EPA sing 108 n n 
C10 H102 EPA sing 109 n n 
C11 C12 EPA doub 110 z n 
C11 H111 EPA sing 111 n n 
C12 C13 EPA sing 112 n n 
C12 H121 EPA sing 113 n n 
C13 C14 EPA sing 114 n n 
C13 H131 EPA sing 115 n n 
C13 H132 EPA sing 116 n n 
C14 C15 EPA doub 117 z n 
C14 H141 EPA sing 118 n n 
C15 C16 EPA sing 119 n n 
C15 H151 EPA sing 120 n n 
C16 C17 EPA sing 121 n n 
C16 H161 EPA sing 122 n n 
C16 H162 EPA sing 123 n n 
C17 C18 EPA doub 124 z n 
C17 H171 EPA sing 125 n n 
C18 C19 EPA sing 126 n n 
C18 H181 EPA sing 127 n n 
C19 C20 EPA sing 128 n n 
C19 H191 EPA sing 129 n n 
C19 H192 EPA sing 130 n n 
C20 H201 EPA sing 131 n n 
C20 H202 EPA sing 132 n n 
C20 H203 EPA sing 133 n n 
#
_atom_sites.entry_id                     3GWX 
_atom_sites.fract_transf_matrix[1][1]    0.025394 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003519 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010466 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EPA A 1 1 1 EPA EPA . 
D 2 EPA B 1 3 3 EPA EPA . 
E 3 HOH A 1 478 11 HOH HOH . 
E 3 HOH A 2 479 13 HOH HOH . 
E 3 HOH A 3 480 25 HOH HOH . 
E 3 HOH A 4 481 31 HOH HOH . 
E 3 HOH A 5 482 39 HOH HOH . 
E 3 HOH A 6 483 58 HOH HOH . 
E 3 HOH A 7 484 60 HOH HOH . 
E 3 HOH A 8 485 63 HOH HOH . 
E 3 HOH A 9 486 66 HOH HOH . 
E 3 HOH A 10 487 93 HOH HOH . 
E 3 HOH A 11 488 103 HOH HOH . 
E 3 HOH A 12 489 120 HOH HOH . 
E 3 HOH A 13 490 134 HOH HOH . 
E 3 HOH A 14 491 143 HOH HOH . 
E 3 HOH A 15 492 161 HOH HOH . 
E 3 HOH A 16 493 163 HOH HOH . 
E 3 HOH A 17 494 167 HOH HOH . 
E 3 HOH A 18 495 168 HOH HOH . 
E 3 HOH A 19 496 169 HOH HOH . 
E 3 HOH A 20 497 181 HOH HOH . 
E 3 HOH A 21 498 193 HOH HOH . 
E 3 HOH A 22 499 197 HOH HOH . 
E 3 HOH A 23 500 199 HOH HOH . 
E 3 HOH A 24 501 209 HOH HOH . 
E 3 HOH A 25 502 213 HOH HOH . 
E 3 HOH A 26 503 218 HOH HOH . 
E 3 HOH A 27 504 227 HOH HOH . 
E 3 HOH A 28 505 228 HOH HOH . 
E 3 HOH A 29 506 230 HOH HOH . 
E 3 HOH A 30 507 233 HOH HOH . 
E 3 HOH A 31 508 239 HOH HOH . 
E 3 HOH A 32 509 241 HOH HOH . 
E 3 HOH A 33 510 250 HOH HOH . 
E 3 HOH A 34 511 251 HOH HOH . 
E 3 HOH A 35 512 254 HOH HOH . 
E 3 HOH A 36 513 275 HOH HOH . 
E 3 HOH A 37 514 277 HOH HOH . 
E 3 HOH A 38 515 280 HOH HOH . 
E 3 HOH A 39 516 300 HOH HOH . 
E 3 HOH A 40 517 306 HOH HOH . 
E 3 HOH A 41 518 309 HOH HOH . 
E 3 HOH A 42 519 311 HOH HOH . 
E 3 HOH A 43 520 317 HOH HOH . 
E 3 HOH A 44 521 327 HOH HOH . 
E 3 HOH A 45 522 334 HOH HOH . 
E 3 HOH A 46 523 338 HOH HOH . 
E 3 HOH A 47 524 346 HOH HOH . 
E 3 HOH A 48 525 361 HOH HOH . 
E 3 HOH A 49 526 368 HOH HOH . 
E 3 HOH A 50 527 5 HOH HOH . 
E 3 HOH A 51 528 6 HOH HOH . 
F 3 HOH B 1 478 26 HOH HOH . 
F 3 HOH B 2 479 37 HOH HOH . 
F 3 HOH B 3 480 46 HOH HOH . 
F 3 HOH B 4 481 65 HOH HOH . 
F 3 HOH B 5 482 80 HOH HOH . 
F 3 HOH B 6 483 83 HOH HOH . 
F 3 HOH B 7 484 86 HOH HOH . 
F 3 HOH B 8 485 105 HOH HOH . 
F 3 HOH B 9 486 111 HOH HOH . 
F 3 HOH B 10 487 114 HOH HOH . 
F 3 HOH B 11 488 115 HOH HOH . 
F 3 HOH B 12 489 118 HOH HOH . 
F 3 HOH B 13 490 126 HOH HOH . 
F 3 HOH B 14 491 131 HOH HOH . 
F 3 HOH B 15 492 135 HOH HOH . 
F 3 HOH B 16 493 148 HOH HOH . 
F 3 HOH B 17 494 166 HOH HOH . 
F 3 HOH B 18 495 177 HOH HOH . 
F 3 HOH B 19 496 178 HOH HOH . 
F 3 HOH B 20 497 184 HOH HOH . 
F 3 HOH B 21 498 202 HOH HOH . 
F 3 HOH B 22 499 207 HOH HOH . 
F 3 HOH B 23 500 210 HOH HOH . 
F 3 HOH B 24 501 236 HOH HOH . 
F 3 HOH B 25 502 271 HOH HOH . 
F 3 HOH B 26 503 281 HOH HOH . 
F 3 HOH B 27 504 282 HOH HOH . 
F 3 HOH B 28 505 283 HOH HOH . 
F 3 HOH B 29 506 307 HOH HOH . 
F 3 HOH B 30 507 314 HOH HOH . 
F 3 HOH B 31 508 319 HOH HOH . 
F 3 HOH B 32 509 328 HOH HOH . 
F 3 HOH B 33 510 340 HOH HOH . 
F 3 HOH B 34 511 343 HOH HOH . 
F 3 HOH B 35 512 362 HOH HOH . 
F 3 HOH B 36 513 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EPA . A . D 2 -5.612 -4.949 11.728 0.5 87.47 ? C1 EPA 3 B 1 
HETATM 2 C C1 EPA . B . D 2 -7.037 -4.515 11.717 0.5 74.03 ? C1 EPA 3 B 1 
HETATM 3 O OA EPA . A . D 2 -6.266 -5.56 10.782 0.5 91.13 ? OA EPA 3 B 1 
HETATM 4 O OA EPA . B . D 2 -7.849 -5.5 11.809 0.5 72.75 ? OA EPA 3 B 1 
HETATM 5 O OB EPA . A . D 2 -5.461 -5.418 12.85 0.5 86.14 ? OB EPA 3 B 1 
HETATM 6 O OB EPA . B . D 2 -6.748 -3.787 12.721 0.5 71 ? OB EPA 3 B 1 
HETATM 7 C C2 EPA . A . D 2 -5.03 -3.585 11.456 0.5 87.07 ? C2 EPA 3 B 1 
HETATM 8 C C2 EPA . B . D 2 -6.356 -4.242 10.346 0.5 73.42 ? C2 EPA 3 B 1 
HETATM 9 C C3 EPA . A . D 2 -6.099 -2.434 11.567 0.5 84.52 ? C3 EPA 3 B 1 
HETATM 10 C C3 EPA . B . D 2 -6.593 -2.839 9.889 0.5 72.83 ? C3 EPA 3 B 1 
HETATM 11 C C4 EPA . A . D 2 -5.308 -1.241 11.102 0.5 81.77 ? C4 EPA 3 B 1 
HETATM 12 C C4 EPA . B . D 2 -5.286 -2.065 9.631 0.5 72.94 ? C4 EPA 3 B 1 
HETATM 13 C C5 EPA . A . D 2 -6.096 0.047 11.126 0.5 77.72 ? C5 EPA 3 B 1 
HETATM 14 C C5 EPA . B . D 2 -5.802 -0.696 9.107 0.5 74.1 ? C5 EPA 3 B 1 
HETATM 15 C C6 EPA . A . D 2 -5.532 1.153 11.549 0.5 73.8 ? C6 EPA 3 B 1 
HETATM 16 C C6 EPA . B . D 2 -5.417 0.544 9.515 0.5 73.95 ? C6 EPA 3 B 1 
HETATM 17 C C7 EPA . A . D 2 -4.057 1.222 12.028 0.5 72.45 ? C7 EPA 3 B 1 
HETATM 18 C C7 EPA . B . D 2 -4.388 0.851 10.567 0.5 73.43 ? C7 EPA 3 B 1 
HETATM 19 C C8 EPA . A . D 2 -3.155 1.597 10.837 0.5 71 ? C8 EPA 3 B 1 
HETATM 20 C C8 EPA . B . D 2 -4.883 2.037 11.388 0.5 72.16 ? C8 EPA 3 B 1 
HETATM 21 C C9 EPA . A . D 2 -1.806 1.496 10.858 0.5 67.59 ? C9 EPA 3 B 1 
HETATM 22 C C9 EPA . B . D 2 -4.11 3.035 11.901 0.5 72.46 ? C9 EPA 3 B 1 
HETATM 23 C C10 EPA . A . D 2 -1.075 0.993 12.085 0.5 65.22 ? C10 EPA 3 B 1 
HETATM 24 C C10 EPA . B . D 2 -2.61 3.19 11.758 0.5 73.42 ? C10 EPA 3 B 1 
HETATM 25 C C11 EPA . A . D 2 -0.622 -0.458 11.906 0.5 62.05 ? C11 EPA 3 B 1 
HETATM 26 C C11 EPA . B . D 2 -2.423 4.464 10.951 0.5 72.7 ? C11 EPA 3 B 1 
HETATM 27 C C12 EPA . A . D 2 0.61 -0.955 12.283 0.5 62.27 ? C12 EPA 3 B 1 
HETATM 28 C C12 EPA . B . D 2 -1.781 4.54 9.781 0.5 71.73 ? C12 EPA 3 B 1 
HETATM 29 C C13 EPA . A . D 2 1.772 -0.2 12.934 0.5 64.18 ? C13 EPA 3 B 1 
HETATM 30 C C13 EPA . B . D 2 -1.112 3.383 9.028 0.5 70.07 ? C13 EPA 3 B 1 
HETATM 31 C C14 EPA . A . D 2 1.595 -0.19 14.428 0.5 64.49 ? C14 EPA 3 B 1 
HETATM 32 C C14 EPA . B . D 2 -0.818 3.895 7.635 0.5 64.93 ? C14 EPA 3 B 1 
HETATM 33 C C15 EPA . A . D 2 2.453 0.105 15.42 0.5 63.45 ? C15 EPA 3 B 1 
HETATM 34 C C15 EPA . B . D 2 -0.2 3.387 6.568 0.5 63.92 ? C15 EPA 3 B 1 
HETATM 35 C C16 EPA . A . D 2 3.891 0.518 15.321 0.5 63.47 ? C16 EPA 3 B 1 
HETATM 36 C C16 EPA . B . D 2 0.48 2.048 6.302 0.5 65.23 ? C16 EPA 3 B 1 
HETATM 37 C C17 EPA . A . D 2 4.746 -0.267 16.247 0.5 59.81 ? C17 EPA 3 B 1 
HETATM 38 C C17 EPA . B . D 2 1.778 2.197 5.534 0.5 65.48 ? C17 EPA 3 B 1 
HETATM 39 C C18 EPA . A . D 2 5.724 -1.141 15.991 0.5 61.86 ? C18 EPA 3 B 1 
HETATM 40 C C18 EPA . B . D 2 1.996 2.374 4.212 0.5 66.6 ? C18 EPA 3 B 1 
HETATM 41 C C19 EPA . A . D 2 6.32 -1.658 14.695 0.5 61.81 ? C19 EPA 3 B 1 
HETATM 42 C C19 EPA . B . D 2 1.03 2.467 3.075 0.5 63.62 ? C19 EPA 3 B 1 
HETATM 43 C C20 EPA . A . D 2 7.568 -2.409 15.165 0.5 64.11 ? C20 EPA 3 B 1 
HETATM 44 C C20 EPA . B . D 2 1.781 3.214 2.009 0.5 60.07 ? C20 EPA 3 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#