data_3GX0 # _model_server_result.job_id rQ8Tft-PgvjgjK-Ar8bzFA _model_server_result.datetime_utc '2025-02-28 02:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3GX0 # _exptl.entry_id 3GX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.631 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXIDIZED GLUTATHIONE DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GX0 _cell.length_a 68.49 _cell.length_b 68.49 _cell.length_c 111.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 111.99 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H32 N6 O12 S2' _chem_comp.formula_weight 612.631 _chem_comp.id GDS _chem_comp.mon_nstd_flag . _chem_comp.name 'OXIDIZED GLUTATHIONE DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDS sing 83 n n N1 HN11 GDS sing 84 n n N1 HN12 GDS sing 85 n n CA1 C1 GDS sing 86 n n CA1 CB1 GDS sing 87 n n CA1 HA1 GDS sing 88 n n C1 OE1 GDS doub 89 n n C1 OE2 GDS sing 90 n n OE2 HO2 GDS sing 91 n n CB1 CG1 GDS sing 92 n n CB1 HB11 GDS sing 93 n n CB1 HB12 GDS sing 94 n n CG1 CD1 GDS sing 95 n n CG1 HG11 GDS sing 96 n n CG1 HG12 GDS sing 97 n n CD1 O1 GDS doub 98 n n CD1 N2 GDS sing 99 n n N2 CA2 GDS sing 100 n n N2 HN2 GDS sing 101 n n CA2 C2 GDS sing 102 n n CA2 CB2 GDS sing 103 n n CA2 HA2 GDS sing 104 n n C2 O2 GDS doub 105 n n C2 N3 GDS sing 106 n n CB2 SG2 GDS sing 107 n n CB2 HB21 GDS sing 108 n n CB2 HB22 GDS sing 109 n n SG2 SG5 GDS sing 110 n n N3 CA3 GDS sing 111 n n N3 HN3 GDS sing 112 n n CA3 C3 GDS sing 113 n n CA3 HA31 GDS sing 114 n n CA3 HA32 GDS sing 115 n n C3 OE3 GDS doub 116 n n C3 OE4 GDS sing 117 n n OE4 HO4 GDS sing 118 n n N4 CA4 GDS sing 119 n n N4 C5 GDS sing 120 n n N4 HN4 GDS sing 121 n n CA4 C4 GDS sing 122 n n CA4 HA41 GDS sing 123 n n CA4 HA42 GDS sing 124 n n C4 OE5 GDS doub 125 n n C4 OE6 GDS sing 126 n n OE6 HO6 GDS sing 127 n n C5 O5 GDS doub 128 n n C5 CA5 GDS sing 129 n n CA5 N5 GDS sing 130 n n CA5 CB5 GDS sing 131 n n CA5 HA5 GDS sing 132 n n N5 CD6 GDS sing 133 n n N5 HN5 GDS sing 134 n n CB5 SG5 GDS sing 135 n n CB5 HB51 GDS sing 136 n n CB5 HB52 GDS sing 137 n n CA6 C6 GDS sing 138 n n CA6 N6 GDS sing 139 n n CA6 CB6 GDS sing 140 n n CA6 HA6 GDS sing 141 n n C6 OE7 GDS doub 142 n n C6 OE8 GDS sing 143 n n OE8 HO8 GDS sing 144 n n N6 HN61 GDS sing 145 n n N6 HN62 GDS sing 146 n n CB6 CG6 GDS sing 147 n n CB6 HB61 GDS sing 148 n n CB6 HB62 GDS sing 149 n n CG6 CD6 GDS sing 150 n n CG6 HG61 GDS sing 151 n n CG6 HG62 GDS sing 152 n n CD6 O6 GDS doub 153 n n # _atom_sites.entry_id 3GX0 _atom_sites.fract_transf_matrix[1][1] 0.014601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDS A 1 301 301 GDS GDS . C 3 HOH A 1 216 1 HOH HOH . C 3 HOH A 2 217 3 HOH HOH . C 3 HOH A 3 218 4 HOH HOH . C 3 HOH A 4 219 5 HOH HOH . C 3 HOH A 5 220 6 HOH HOH . C 3 HOH A 6 221 7 HOH HOH . C 3 HOH A 7 222 8 HOH HOH . C 3 HOH A 8 223 10 HOH HOH . C 3 HOH A 9 224 11 HOH HOH . C 3 HOH A 10 225 12 HOH HOH . C 3 HOH A 11 226 13 HOH HOH . C 3 HOH A 12 227 14 HOH HOH . C 3 HOH A 13 228 15 HOH HOH . C 3 HOH A 14 229 16 HOH HOH . C 3 HOH A 15 230 17 HOH HOH . C 3 HOH A 16 231 18 HOH HOH . C 3 HOH A 17 232 19 HOH HOH . C 3 HOH A 18 233 20 HOH HOH . C 3 HOH A 19 234 21 HOH HOH . C 3 HOH A 20 235 22 HOH HOH . C 3 HOH A 21 236 23 HOH HOH . C 3 HOH A 22 237 24 HOH HOH . C 3 HOH A 23 238 26 HOH HOH . C 3 HOH A 24 239 28 HOH HOH . C 3 HOH A 25 240 29 HOH HOH . C 3 HOH A 26 241 31 HOH HOH . C 3 HOH A 27 242 32 HOH HOH . C 3 HOH A 28 243 33 HOH HOH . C 3 HOH A 29 244 34 HOH HOH . C 3 HOH A 30 245 35 HOH HOH . C 3 HOH A 31 246 36 HOH HOH . C 3 HOH A 32 247 37 HOH HOH . C 3 HOH A 33 248 38 HOH HOH . C 3 HOH A 34 249 39 HOH HOH . C 3 HOH A 35 250 40 HOH HOH . C 3 HOH A 36 251 41 HOH HOH . C 3 HOH A 37 252 42 HOH HOH . C 3 HOH A 38 253 43 HOH HOH . C 3 HOH A 39 254 44 HOH HOH . C 3 HOH A 40 255 45 HOH HOH . C 3 HOH A 41 256 46 HOH HOH . C 3 HOH A 42 257 47 HOH HOH . C 3 HOH A 43 258 48 HOH HOH . C 3 HOH A 44 259 49 HOH HOH . C 3 HOH A 45 260 50 HOH HOH . C 3 HOH A 46 261 51 HOH HOH . C 3 HOH A 47 262 52 HOH HOH . C 3 HOH A 48 263 53 HOH HOH . C 3 HOH A 49 264 54 HOH HOH . C 3 HOH A 50 265 55 HOH HOH . C 3 HOH A 51 266 58 HOH HOH . C 3 HOH A 52 267 59 HOH HOH . C 3 HOH A 53 268 61 HOH HOH . C 3 HOH A 54 269 62 HOH HOH . C 3 HOH A 55 270 63 HOH HOH . C 3 HOH A 56 271 64 HOH HOH . C 3 HOH A 57 272 65 HOH HOH . C 3 HOH A 58 273 66 HOH HOH . C 3 HOH A 59 274 67 HOH HOH . C 3 HOH A 60 275 69 HOH HOH . C 3 HOH A 61 276 70 HOH HOH . C 3 HOH A 62 277 71 HOH HOH . C 3 HOH A 63 278 72 HOH HOH . C 3 HOH A 64 279 73 HOH HOH . C 3 HOH A 65 280 74 HOH HOH . C 3 HOH A 66 281 75 HOH HOH . C 3 HOH A 67 282 77 HOH HOH . C 3 HOH A 68 283 78 HOH HOH . C 3 HOH A 69 284 79 HOH HOH . C 3 HOH A 70 285 80 HOH HOH . C 3 HOH A 71 286 81 HOH HOH . C 3 HOH A 72 287 82 HOH HOH . C 3 HOH A 73 288 83 HOH HOH . C 3 HOH A 74 289 84 HOH HOH . C 3 HOH A 75 290 85 HOH HOH . C 3 HOH A 76 291 86 HOH HOH . C 3 HOH A 77 292 87 HOH HOH . C 3 HOH A 78 293 88 HOH HOH . C 3 HOH A 79 294 92 HOH HOH . C 3 HOH A 80 295 94 HOH HOH . C 3 HOH A 81 296 95 HOH HOH . C 3 HOH A 82 297 96 HOH HOH . C 3 HOH A 83 298 99 HOH HOH . C 3 HOH A 84 299 100 HOH HOH . C 3 HOH A 85 300 101 HOH HOH . C 3 HOH A 86 302 102 HOH HOH . C 3 HOH A 87 303 103 HOH HOH . C 3 HOH A 88 304 104 HOH HOH . C 3 HOH A 89 305 106 HOH HOH . C 3 HOH A 90 306 107 HOH HOH . C 3 HOH A 91 307 108 HOH HOH . C 3 HOH A 92 308 109 HOH HOH . C 3 HOH A 93 309 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDS . . . B 2 28.505 43.369 52.674 1 37.68 ? N1 GDS 301 A 1 HETATM 2 C CA1 GDS . . . B 2 29.117 42.639 51.564 1 38.18 ? CA1 GDS 301 A 1 HETATM 3 C C1 GDS . . . B 2 30.639 42.715 51.713 1 39.51 ? C1 GDS 301 A 1 HETATM 4 O OE1 GDS . . . B 2 31.13 43.822 52.071 1 37.91 ? OE1 GDS 301 A 1 HETATM 5 O OE2 GDS . . . B 2 31.285 41.651 51.466 1 42.13 ? OE2 GDS 301 A 1 HETATM 6 C CB1 GDS . . . B 2 28.643 43.167 50.174 1 36.28 ? CB1 GDS 301 A 1 HETATM 7 C CG1 GDS . . . B 2 28.975 42.158 49.049 1 34.92 ? CG1 GDS 301 A 1 HETATM 8 C CD1 GDS . . . B 2 28.187 40.813 49.173 1 34.95 ? CD1 GDS 301 A 1 HETATM 9 O O1 GDS . . . B 2 26.997 40.801 49.53 1 36.3 ? O1 GDS 301 A 1 HETATM 10 N N2 GDS . . . B 2 28.903 39.712 48.876 1 30.81 ? N2 GDS 301 A 1 HETATM 11 C CA2 GDS . . . B 2 28.356 38.328 48.92 1 27.74 ? CA2 GDS 301 A 1 HETATM 12 C C2 GDS . . . B 2 29.277 37.444 49.748 1 27.02 ? C2 GDS 301 A 1 HETATM 13 O O2 GDS . . . B 2 30.479 37.726 49.834 1 27.54 ? O2 GDS 301 A 1 HETATM 14 C CB2 GDS . . . B 2 28.302 37.747 47.507 1 25.95 ? CB2 GDS 301 A 1 HETATM 15 S SG2 GDS . . . B 2 26.975 38.412 46.438 1 27.9 ? SG2 GDS 301 A 1 HETATM 16 N N3 GDS . . . B 2 28.706 36.374 50.328 1 23.71 ? N3 GDS 301 A 1 HETATM 17 C CA3 GDS . . . B 2 29.49 35.418 51.133 1 21.34 ? CA3 GDS 301 A 1 HETATM 18 C C3 GDS . . . B 2 28.772 34.064 51.253 1 22.75 ? C3 GDS 301 A 1 HETATM 19 O OE3 GDS . . . B 2 28.936 33.456 52.355 1 24.24 ? OE3 GDS 301 A 1 HETATM 20 O OE4 GDS . . . B 2 28.06 33.665 50.284 1 20.17 ? OE4 GDS 301 A 1 HETATM 21 N N4 GDS . . . B 2 24.261 41.186 50.644 1 33.74 ? N4 GDS 301 A 1 HETATM 22 C CA4 GDS . . . B 2 23.507 42.35 51.201 1 35.62 ? CA4 GDS 301 A 1 HETATM 23 C C4 GDS . . . B 2 24.416 43.138 52.165 1 36.89 ? C4 GDS 301 A 1 HETATM 24 O OE5 GDS . . . B 2 25.573 42.67 52.34 1 36.92 ? OE5 GDS 301 A 1 HETATM 25 O OE6 GDS . . . B 2 23.932 44.175 52.701 1 36.67 ? OE6 GDS 301 A 1 HETATM 26 C C5 GDS . . . B 2 23.587 40.134 50.153 1 32.55 ? C5 GDS 301 A 1 HETATM 27 O O5 GDS . . . B 2 22.344 40.047 50.109 1 28.67 ? O5 GDS 301 A 1 HETATM 28 C CA5 GDS . . . B 2 24.464 39.011 49.597 1 31.59 ? CA5 GDS 301 A 1 HETATM 29 N N5 GDS . . . B 2 23.953 37.74 50.166 1 29.83 ? N5 GDS 301 A 1 HETATM 30 C CB5 GDS . . . B 2 24.407 39.095 48.057 1 30.46 ? CB5 GDS 301 A 1 HETATM 31 S SG5 GDS . . . B 2 25.209 37.68 47.248 1 28.62 ? SG5 GDS 301 A 1 HETATM 32 C CA6 GDS . . . B 2 24.147 33.647 52.866 1 24.47 ? CA6 GDS 301 A 1 HETATM 33 C C6 GDS . . . B 2 23.421 32.716 51.878 1 21.63 ? C6 GDS 301 A 1 HETATM 34 O OE7 GDS . . . B 2 22.283 33.098 51.527 1 19.15 ? OE7 GDS 301 A 1 HETATM 35 O OE8 GDS . . . B 2 23.986 31.65 51.5 1 19.67 ? OE8 GDS 301 A 1 HETATM 36 N N6 GDS . . . B 2 25.101 32.915 53.734 1 23.92 ? N6 GDS 301 A 1 HETATM 37 C CB6 GDS . . . B 2 24.891 34.75 52.125 1 27.54 ? CB6 GDS 301 A 1 HETATM 38 C CG6 GDS . . . B 2 23.952 35.638 51.342 1 28.93 ? CG6 GDS 301 A 1 HETATM 39 C CD6 GDS . . . B 2 24.722 36.84 50.782 1 30.36 ? CD6 GDS 301 A 1 HETATM 40 O O6 GDS . . . B 2 25.949 36.912 50.897 1 29.66 ? O6 GDS 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #