data_3GX9 # _model_server_result.job_id LiciU0qbs8VXDWKVTITcUg _model_server_result.datetime_utc '2024-11-27 20:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 3GX9 # _exptl.entry_id 3GX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GX9 _cell.length_a 49.651 _cell.length_b 122.941 _cell.length_c 179.587 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 122.941 89.7935 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3GX9 _atom_sites.fract_transf_matrix[1][1] 0.020141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 400 400 FMN FMN . C 3 TXD A 1 600 600 TXD TXD . D 4 HOH A 1 378 1 HOH HOH . D 4 HOH A 2 379 2 HOH HOH . D 4 HOH A 3 380 3 HOH HOH . D 4 HOH A 4 381 4 HOH HOH . D 4 HOH A 5 382 5 HOH HOH . D 4 HOH A 6 383 6 HOH HOH . D 4 HOH A 7 384 7 HOH HOH . D 4 HOH A 8 385 8 HOH HOH . D 4 HOH A 9 386 9 HOH HOH . D 4 HOH A 10 387 10 HOH HOH . D 4 HOH A 11 388 11 HOH HOH . D 4 HOH A 12 389 12 HOH HOH . D 4 HOH A 13 390 13 HOH HOH . D 4 HOH A 14 391 14 HOH HOH . D 4 HOH A 15 392 15 HOH HOH . D 4 HOH A 16 393 16 HOH HOH . D 4 HOH A 17 394 17 HOH HOH . D 4 HOH A 18 395 18 HOH HOH . D 4 HOH A 19 396 19 HOH HOH . D 4 HOH A 20 397 20 HOH HOH . D 4 HOH A 21 398 21 HOH HOH . D 4 HOH A 22 399 22 HOH HOH . D 4 HOH A 23 401 23 HOH HOH . D 4 HOH A 24 402 24 HOH HOH . D 4 HOH A 25 403 25 HOH HOH . D 4 HOH A 26 404 26 HOH HOH . D 4 HOH A 27 405 27 HOH HOH . D 4 HOH A 28 406 28 HOH HOH . D 4 HOH A 29 407 29 HOH HOH . D 4 HOH A 30 408 30 HOH HOH . D 4 HOH A 31 409 31 HOH HOH . D 4 HOH A 32 410 32 HOH HOH . D 4 HOH A 33 411 33 HOH HOH . D 4 HOH A 34 412 34 HOH HOH . D 4 HOH A 35 413 35 HOH HOH . D 4 HOH A 36 414 36 HOH HOH . D 4 HOH A 37 415 37 HOH HOH . D 4 HOH A 38 416 38 HOH HOH . D 4 HOH A 39 417 39 HOH HOH . D 4 HOH A 40 418 40 HOH HOH . D 4 HOH A 41 419 41 HOH HOH . D 4 HOH A 42 420 42 HOH HOH . D 4 HOH A 43 421 43 HOH HOH . D 4 HOH A 44 422 44 HOH HOH . D 4 HOH A 45 423 45 HOH HOH . D 4 HOH A 46 424 46 HOH HOH . D 4 HOH A 47 425 47 HOH HOH . D 4 HOH A 48 426 48 HOH HOH . D 4 HOH A 49 427 49 HOH HOH . D 4 HOH A 50 428 50 HOH HOH . D 4 HOH A 51 429 51 HOH HOH . D 4 HOH A 52 430 52 HOH HOH . D 4 HOH A 53 431 53 HOH HOH . D 4 HOH A 54 432 54 HOH HOH . D 4 HOH A 55 433 55 HOH HOH . D 4 HOH A 56 434 56 HOH HOH . D 4 HOH A 57 435 57 HOH HOH . D 4 HOH A 58 436 58 HOH HOH . D 4 HOH A 59 437 59 HOH HOH . D 4 HOH A 60 438 60 HOH HOH . D 4 HOH A 61 439 61 HOH HOH . D 4 HOH A 62 440 62 HOH HOH . D 4 HOH A 63 441 63 HOH HOH . D 4 HOH A 64 442 64 HOH HOH . D 4 HOH A 65 443 65 HOH HOH . D 4 HOH A 66 444 66 HOH HOH . D 4 HOH A 67 445 67 HOH HOH . D 4 HOH A 68 446 68 HOH HOH . D 4 HOH A 69 447 69 HOH HOH . D 4 HOH A 70 448 70 HOH HOH . D 4 HOH A 71 449 71 HOH HOH . D 4 HOH A 72 450 72 HOH HOH . D 4 HOH A 73 451 73 HOH HOH . D 4 HOH A 74 452 74 HOH HOH . D 4 HOH A 75 453 75 HOH HOH . D 4 HOH A 76 454 76 HOH HOH . D 4 HOH A 77 455 77 HOH HOH . D 4 HOH A 78 456 78 HOH HOH . D 4 HOH A 79 457 79 HOH HOH . D 4 HOH A 80 458 80 HOH HOH . D 4 HOH A 81 459 81 HOH HOH . D 4 HOH A 82 460 82 HOH HOH . D 4 HOH A 83 461 83 HOH HOH . D 4 HOH A 84 462 84 HOH HOH . D 4 HOH A 85 463 85 HOH HOH . D 4 HOH A 86 464 86 HOH HOH . D 4 HOH A 87 465 87 HOH HOH . D 4 HOH A 88 466 88 HOH HOH . D 4 HOH A 89 467 89 HOH HOH . D 4 HOH A 90 468 90 HOH HOH . D 4 HOH A 91 469 91 HOH HOH . D 4 HOH A 92 470 92 HOH HOH . D 4 HOH A 93 471 93 HOH HOH . D 4 HOH A 94 472 94 HOH HOH . D 4 HOH A 95 473 95 HOH HOH . D 4 HOH A 96 474 96 HOH HOH . D 4 HOH A 97 475 97 HOH HOH . D 4 HOH A 98 476 98 HOH HOH . D 4 HOH A 99 477 99 HOH HOH . D 4 HOH A 100 478 100 HOH HOH . D 4 HOH A 101 479 101 HOH HOH . D 4 HOH A 102 480 102 HOH HOH . D 4 HOH A 103 481 103 HOH HOH . D 4 HOH A 104 482 104 HOH HOH . D 4 HOH A 105 483 105 HOH HOH . D 4 HOH A 106 484 106 HOH HOH . D 4 HOH A 107 485 107 HOH HOH . D 4 HOH A 108 486 108 HOH HOH . D 4 HOH A 109 487 109 HOH HOH . D 4 HOH A 110 488 110 HOH HOH . D 4 HOH A 111 489 111 HOH HOH . D 4 HOH A 112 490 112 HOH HOH . D 4 HOH A 113 491 113 HOH HOH . D 4 HOH A 114 492 114 HOH HOH . D 4 HOH A 115 493 115 HOH HOH . D 4 HOH A 116 494 116 HOH HOH . D 4 HOH A 117 495 117 HOH HOH . D 4 HOH A 118 496 118 HOH HOH . D 4 HOH A 119 497 119 HOH HOH . D 4 HOH A 120 498 120 HOH HOH . D 4 HOH A 121 499 121 HOH HOH . D 4 HOH A 122 500 122 HOH HOH . D 4 HOH A 123 501 123 HOH HOH . D 4 HOH A 124 502 124 HOH HOH . D 4 HOH A 125 503 125 HOH HOH . D 4 HOH A 126 504 126 HOH HOH . D 4 HOH A 127 505 127 HOH HOH . D 4 HOH A 128 506 128 HOH HOH . D 4 HOH A 129 507 129 HOH HOH . D 4 HOH A 130 508 130 HOH HOH . D 4 HOH A 131 509 131 HOH HOH . D 4 HOH A 132 510 132 HOH HOH . D 4 HOH A 133 511 133 HOH HOH . D 4 HOH A 134 512 134 HOH HOH . D 4 HOH A 135 513 135 HOH HOH . D 4 HOH A 136 514 136 HOH HOH . D 4 HOH A 137 515 137 HOH HOH . D 4 HOH A 138 516 138 HOH HOH . D 4 HOH A 139 517 139 HOH HOH . D 4 HOH A 140 518 140 HOH HOH . D 4 HOH A 141 519 141 HOH HOH . D 4 HOH A 142 520 142 HOH HOH . D 4 HOH A 143 521 143 HOH HOH . D 4 HOH A 144 522 144 HOH HOH . D 4 HOH A 145 523 145 HOH HOH . D 4 HOH A 146 524 146 HOH HOH . D 4 HOH A 147 525 147 HOH HOH . D 4 HOH A 148 526 148 HOH HOH . D 4 HOH A 149 527 149 HOH HOH . D 4 HOH A 150 528 150 HOH HOH . D 4 HOH A 151 529 151 HOH HOH . D 4 HOH A 152 530 152 HOH HOH . D 4 HOH A 153 531 153 HOH HOH . D 4 HOH A 154 532 154 HOH HOH . D 4 HOH A 155 533 155 HOH HOH . D 4 HOH A 156 534 156 HOH HOH . D 4 HOH A 157 535 157 HOH HOH . D 4 HOH A 158 536 158 HOH HOH . D 4 HOH A 159 537 159 HOH HOH . D 4 HOH A 160 538 160 HOH HOH . D 4 HOH A 161 539 161 HOH HOH . D 4 HOH A 162 540 162 HOH HOH . D 4 HOH A 163 541 163 HOH HOH . D 4 HOH A 164 542 164 HOH HOH . D 4 HOH A 165 543 165 HOH HOH . D 4 HOH A 166 544 166 HOH HOH . D 4 HOH A 167 545 167 HOH HOH . D 4 HOH A 168 546 168 HOH HOH . D 4 HOH A 169 547 169 HOH HOH . D 4 HOH A 170 548 170 HOH HOH . D 4 HOH A 171 549 171 HOH HOH . D 4 HOH A 172 550 172 HOH HOH . D 4 HOH A 173 551 173 HOH HOH . D 4 HOH A 174 552 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 14.703 51.283 24.331 1 19 ? N1 FMN 400 A 1 HETATM 2 C C2 FMN . . . B 2 15.583 52.321 24.061 1 20.85 ? C2 FMN 400 A 1 HETATM 3 O O2 FMN . . . B 2 16.804 52.175 24.2 1 21.46 ? O2 FMN 400 A 1 HETATM 4 N N3 FMN . . . B 2 15.101 53.541 23.628 1 19.3 ? N3 FMN 400 A 1 HETATM 5 C C4 FMN . . . B 2 13.769 53.772 23.452 1 20.28 ? C4 FMN 400 A 1 HETATM 6 O O4 FMN . . . B 2 13.374 54.933 23.345 1 20.78 ? O4 FMN 400 A 1 HETATM 7 C C4A FMN . . . B 2 12.866 52.749 23.71 1 20.81 ? C4A FMN 400 A 1 HETATM 8 N N5 FMN . . . B 2 11.49 52.987 23.558 1 19.06 ? N5 FMN 400 A 1 HETATM 9 C C5A FMN . . . B 2 10.636 51.95 23.896 1 21.89 ? C5A FMN 400 A 1 HETATM 10 C C6 FMN . . . B 2 9.283 52.147 23.759 1 20.44 ? C6 FMN 400 A 1 HETATM 11 C C7 FMN . . . B 2 8.388 51.143 24.121 1 21.45 ? C7 FMN 400 A 1 HETATM 12 C C7M FMN . . . B 2 6.957 51.565 24.387 1 16.44 ? C7M FMN 400 A 1 HETATM 13 C C8 FMN . . . B 2 8.882 49.908 24.548 1 23.62 ? C8 FMN 400 A 1 HETATM 14 C C8M FMN . . . B 2 7.985 48.867 25.141 1 21.76 ? C8M FMN 400 A 1 HETATM 15 C C9 FMN . . . B 2 10.259 49.697 24.678 1 21.39 ? C9 FMN 400 A 1 HETATM 16 C C9A FMN . . . B 2 11.136 50.703 24.343 1 19.29 ? C9A FMN 400 A 1 HETATM 17 N N10 FMN . . . B 2 12.5 50.491 24.475 1 18.8 ? N10 FMN 400 A 1 HETATM 18 C C10 FMN . . . B 2 13.358 51.511 24.165 1 20.22 ? C10 FMN 400 A 1 HETATM 19 C C1' FMN . . . B 2 13.05 49.291 25.15 1 17.29 ? C1' FMN 400 A 1 HETATM 20 C C2' FMN . . . B 2 12.878 49.589 26.669 1 21.2 ? C2' FMN 400 A 1 HETATM 21 O O2' FMN . . . B 2 13.807 50.606 27.075 1 14.81 ? O2' FMN 400 A 1 HETATM 22 C C3' FMN . . . B 2 12.981 48.281 27.469 1 20.93 ? C3' FMN 400 A 1 HETATM 23 O O3' FMN . . . B 2 14.338 47.893 27.328 1 20.59 ? O3' FMN 400 A 1 HETATM 24 C C4' FMN . . . B 2 12.03 47.124 26.964 1 21.12 ? C4' FMN 400 A 1 HETATM 25 O O4' FMN . . . B 2 10.68 47.455 27.183 1 21.67 ? O4' FMN 400 A 1 HETATM 26 C C5' FMN . . . B 2 12.221 45.806 27.728 1 23.05 ? C5' FMN 400 A 1 HETATM 27 O O5' FMN . . . B 2 12.052 45.992 29.149 1 19.64 ? O5' FMN 400 A 1 HETATM 28 P P FMN . . . B 2 10.648 45.758 29.874 1 19.91 ? P FMN 400 A 1 HETATM 29 O O1P FMN . . . B 2 9.619 46.742 29.246 1 17.4 ? O1P FMN 400 A 1 HETATM 30 O O2P FMN . . . B 2 10.367 44.299 29.707 1 21.51 ? O2P FMN 400 A 1 HETATM 31 O O3P FMN . . . B 2 10.716 45.921 31.392 1 14.54 ? O3P FMN 400 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #