data_3GX9 # _model_server_result.job_id MkJ-MEAUcRZVDaYyYL2pRw _model_server_result.datetime_utc '2024-11-08 14:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 3GX9 # _exptl.entry_id 3GX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.457 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GX9 _cell.length_a 49.651 _cell.length_b 122.941 _cell.length_c 179.587 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 122.941 89.7935 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H31 N7 O14 P2' _chem_comp.formula_weight 667.457 _chem_comp.id TXD _chem_comp.mon_nstd_flag n _chem_comp.name '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7N C7N TXD doub 388 n n C7N C3N TXD sing 389 n n C7N N7N TXD sing 390 n n N7N H7N1 TXD sing 391 n n N7N H7N2 TXD sing 392 n n C3N C4N TXD sing 393 n n C3N C2N TXD sing 394 n n C3N H3N TXD sing 395 n n C2N N1N TXD sing 396 n n C2N H2N1 TXD sing 397 n n C2N H2N2 TXD sing 398 n n C4N C5N TXD doub 399 n n C4N H4N TXD sing 400 n n C5N C6N TXD sing 401 n n C5N H5N TXD sing 402 n n C6N N1N TXD sing 403 n n C6N H6N1 TXD sing 404 n n C6N H6N2 TXD sing 405 n n N1N "C1'A" TXD sing 406 n n "C1'A" "O4'A" TXD sing 407 n n "C1'A" "C2'A" TXD sing 408 n n "C1'A" "H1'A" TXD sing 409 n n "O4'A" "C4'A" TXD sing 410 n n "C2'A" "C3'A" TXD sing 411 n n "C2'A" "O2'A" TXD sing 412 n n "C2'A" "H2'A" TXD sing 413 n n "O2'A" HO2A TXD sing 414 n n "C3'A" "C4'A" TXD sing 415 n n "C3'A" "O3'A" TXD sing 416 n n "C3'A" "H3'A" TXD sing 417 n n "O3'A" HO3A TXD sing 418 n n "C4'A" "C5'A" TXD sing 419 n n "C4'A" "H4'A" TXD sing 420 n n "C5'A" "O5'A" TXD sing 421 n n "C5'A" "H5'1" TXD sing 422 n n "C5'A" "H5'2" TXD sing 423 n n "O5'A" PN TXD sing 424 n n PN O1N TXD doub 425 n n PN O2N TXD sing 426 n n PN O3 TXD sing 427 n n O2N HO2N TXD sing 428 n n O3 PA TXD sing 429 n n PA O1P TXD doub 430 n n PA O5' TXD sing 431 n n PA O2P TXD sing 432 n n O2P HO2P TXD sing 433 n n O5' C5' TXD sing 434 n n C5' C4' TXD sing 435 n n C5' "H5'A" TXD sing 436 n n C5' "H5'B" TXD sing 437 n n C4' O4' TXD sing 438 n n C4' C3' TXD sing 439 n n C4' H4' TXD sing 440 n n C3' O3' TXD sing 441 n n C3' C2' TXD sing 442 n n C3' H3' TXD sing 443 n n O3' HO3' TXD sing 444 n n C2' C1' TXD sing 445 n n C2' O2' TXD sing 446 n n C2' H2' TXD sing 447 n n O2' HO2' TXD sing 448 n n C1' O4' TXD sing 449 n n C1' N9A TXD sing 450 n n C1' H1' TXD sing 451 n n N9A C4A TXD sing 452 n y N9A C8A TXD sing 453 n y C4A N3A TXD sing 454 n y C4A C5A TXD doub 455 n y N3A C2A TXD doub 456 n y C2A N1A TXD sing 457 n y C2A H2A TXD sing 458 n n N1A C6A TXD doub 459 n y C6A C5A TXD sing 460 n y C6A N6A TXD sing 461 n n N6A H6A1 TXD sing 462 n n N6A H6A2 TXD sing 463 n n C5A N7A TXD sing 464 n y N7A C8A TXD doub 465 n y C8A H8A TXD sing 466 n n # _atom_sites.entry_id 3GX9 _atom_sites.fract_transf_matrix[1][1] 0.020141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 400 400 FMN FMN . C 3 TXD A 1 600 600 TXD TXD . D 4 HOH A 1 378 1 HOH HOH . D 4 HOH A 2 379 2 HOH HOH . D 4 HOH A 3 380 3 HOH HOH . D 4 HOH A 4 381 4 HOH HOH . D 4 HOH A 5 382 5 HOH HOH . D 4 HOH A 6 383 6 HOH HOH . D 4 HOH A 7 384 7 HOH HOH . D 4 HOH A 8 385 8 HOH HOH . D 4 HOH A 9 386 9 HOH HOH . D 4 HOH A 10 387 10 HOH HOH . D 4 HOH A 11 388 11 HOH HOH . D 4 HOH A 12 389 12 HOH HOH . D 4 HOH A 13 390 13 HOH HOH . D 4 HOH A 14 391 14 HOH HOH . D 4 HOH A 15 392 15 HOH HOH . D 4 HOH A 16 393 16 HOH HOH . D 4 HOH A 17 394 17 HOH HOH . D 4 HOH A 18 395 18 HOH HOH . D 4 HOH A 19 396 19 HOH HOH . D 4 HOH A 20 397 20 HOH HOH . D 4 HOH A 21 398 21 HOH HOH . D 4 HOH A 22 399 22 HOH HOH . D 4 HOH A 23 401 23 HOH HOH . D 4 HOH A 24 402 24 HOH HOH . D 4 HOH A 25 403 25 HOH HOH . D 4 HOH A 26 404 26 HOH HOH . D 4 HOH A 27 405 27 HOH HOH . D 4 HOH A 28 406 28 HOH HOH . D 4 HOH A 29 407 29 HOH HOH . D 4 HOH A 30 408 30 HOH HOH . D 4 HOH A 31 409 31 HOH HOH . D 4 HOH A 32 410 32 HOH HOH . D 4 HOH A 33 411 33 HOH HOH . D 4 HOH A 34 412 34 HOH HOH . D 4 HOH A 35 413 35 HOH HOH . D 4 HOH A 36 414 36 HOH HOH . D 4 HOH A 37 415 37 HOH HOH . D 4 HOH A 38 416 38 HOH HOH . D 4 HOH A 39 417 39 HOH HOH . D 4 HOH A 40 418 40 HOH HOH . D 4 HOH A 41 419 41 HOH HOH . D 4 HOH A 42 420 42 HOH HOH . D 4 HOH A 43 421 43 HOH HOH . D 4 HOH A 44 422 44 HOH HOH . D 4 HOH A 45 423 45 HOH HOH . D 4 HOH A 46 424 46 HOH HOH . D 4 HOH A 47 425 47 HOH HOH . D 4 HOH A 48 426 48 HOH HOH . D 4 HOH A 49 427 49 HOH HOH . D 4 HOH A 50 428 50 HOH HOH . D 4 HOH A 51 429 51 HOH HOH . D 4 HOH A 52 430 52 HOH HOH . D 4 HOH A 53 431 53 HOH HOH . D 4 HOH A 54 432 54 HOH HOH . D 4 HOH A 55 433 55 HOH HOH . D 4 HOH A 56 434 56 HOH HOH . D 4 HOH A 57 435 57 HOH HOH . D 4 HOH A 58 436 58 HOH HOH . D 4 HOH A 59 437 59 HOH HOH . D 4 HOH A 60 438 60 HOH HOH . D 4 HOH A 61 439 61 HOH HOH . D 4 HOH A 62 440 62 HOH HOH . D 4 HOH A 63 441 63 HOH HOH . D 4 HOH A 64 442 64 HOH HOH . D 4 HOH A 65 443 65 HOH HOH . D 4 HOH A 66 444 66 HOH HOH . D 4 HOH A 67 445 67 HOH HOH . D 4 HOH A 68 446 68 HOH HOH . D 4 HOH A 69 447 69 HOH HOH . D 4 HOH A 70 448 70 HOH HOH . D 4 HOH A 71 449 71 HOH HOH . D 4 HOH A 72 450 72 HOH HOH . D 4 HOH A 73 451 73 HOH HOH . D 4 HOH A 74 452 74 HOH HOH . D 4 HOH A 75 453 75 HOH HOH . D 4 HOH A 76 454 76 HOH HOH . D 4 HOH A 77 455 77 HOH HOH . D 4 HOH A 78 456 78 HOH HOH . D 4 HOH A 79 457 79 HOH HOH . D 4 HOH A 80 458 80 HOH HOH . D 4 HOH A 81 459 81 HOH HOH . D 4 HOH A 82 460 82 HOH HOH . D 4 HOH A 83 461 83 HOH HOH . D 4 HOH A 84 462 84 HOH HOH . D 4 HOH A 85 463 85 HOH HOH . D 4 HOH A 86 464 86 HOH HOH . D 4 HOH A 87 465 87 HOH HOH . D 4 HOH A 88 466 88 HOH HOH . D 4 HOH A 89 467 89 HOH HOH . D 4 HOH A 90 468 90 HOH HOH . D 4 HOH A 91 469 91 HOH HOH . D 4 HOH A 92 470 92 HOH HOH . D 4 HOH A 93 471 93 HOH HOH . D 4 HOH A 94 472 94 HOH HOH . D 4 HOH A 95 473 95 HOH HOH . D 4 HOH A 96 474 96 HOH HOH . D 4 HOH A 97 475 97 HOH HOH . D 4 HOH A 98 476 98 HOH HOH . D 4 HOH A 99 477 99 HOH HOH . D 4 HOH A 100 478 100 HOH HOH . D 4 HOH A 101 479 101 HOH HOH . D 4 HOH A 102 480 102 HOH HOH . D 4 HOH A 103 481 103 HOH HOH . D 4 HOH A 104 482 104 HOH HOH . D 4 HOH A 105 483 105 HOH HOH . D 4 HOH A 106 484 106 HOH HOH . D 4 HOH A 107 485 107 HOH HOH . D 4 HOH A 108 486 108 HOH HOH . D 4 HOH A 109 487 109 HOH HOH . D 4 HOH A 110 488 110 HOH HOH . D 4 HOH A 111 489 111 HOH HOH . D 4 HOH A 112 490 112 HOH HOH . D 4 HOH A 113 491 113 HOH HOH . D 4 HOH A 114 492 114 HOH HOH . D 4 HOH A 115 493 115 HOH HOH . D 4 HOH A 116 494 116 HOH HOH . D 4 HOH A 117 495 117 HOH HOH . D 4 HOH A 118 496 118 HOH HOH . D 4 HOH A 119 497 119 HOH HOH . D 4 HOH A 120 498 120 HOH HOH . D 4 HOH A 121 499 121 HOH HOH . D 4 HOH A 122 500 122 HOH HOH . D 4 HOH A 123 501 123 HOH HOH . D 4 HOH A 124 502 124 HOH HOH . D 4 HOH A 125 503 125 HOH HOH . D 4 HOH A 126 504 126 HOH HOH . D 4 HOH A 127 505 127 HOH HOH . D 4 HOH A 128 506 128 HOH HOH . D 4 HOH A 129 507 129 HOH HOH . D 4 HOH A 130 508 130 HOH HOH . D 4 HOH A 131 509 131 HOH HOH . D 4 HOH A 132 510 132 HOH HOH . D 4 HOH A 133 511 133 HOH HOH . D 4 HOH A 134 512 134 HOH HOH . D 4 HOH A 135 513 135 HOH HOH . D 4 HOH A 136 514 136 HOH HOH . D 4 HOH A 137 515 137 HOH HOH . D 4 HOH A 138 516 138 HOH HOH . D 4 HOH A 139 517 139 HOH HOH . D 4 HOH A 140 518 140 HOH HOH . D 4 HOH A 141 519 141 HOH HOH . D 4 HOH A 142 520 142 HOH HOH . D 4 HOH A 143 521 143 HOH HOH . D 4 HOH A 144 522 144 HOH HOH . D 4 HOH A 145 523 145 HOH HOH . D 4 HOH A 146 524 146 HOH HOH . D 4 HOH A 147 525 147 HOH HOH . D 4 HOH A 148 526 148 HOH HOH . D 4 HOH A 149 527 149 HOH HOH . D 4 HOH A 150 528 150 HOH HOH . D 4 HOH A 151 529 151 HOH HOH . D 4 HOH A 152 530 152 HOH HOH . D 4 HOH A 153 531 153 HOH HOH . D 4 HOH A 154 532 154 HOH HOH . D 4 HOH A 155 533 155 HOH HOH . D 4 HOH A 156 534 156 HOH HOH . D 4 HOH A 157 535 157 HOH HOH . D 4 HOH A 158 536 158 HOH HOH . D 4 HOH A 159 537 159 HOH HOH . D 4 HOH A 160 538 160 HOH HOH . D 4 HOH A 161 539 161 HOH HOH . D 4 HOH A 162 540 162 HOH HOH . D 4 HOH A 163 541 163 HOH HOH . D 4 HOH A 164 542 164 HOH HOH . D 4 HOH A 165 543 165 HOH HOH . D 4 HOH A 166 544 166 HOH HOH . D 4 HOH A 167 545 167 HOH HOH . D 4 HOH A 168 546 168 HOH HOH . D 4 HOH A 169 547 169 HOH HOH . D 4 HOH A 170 548 170 HOH HOH . D 4 HOH A 171 549 171 HOH HOH . D 4 HOH A 172 550 172 HOH HOH . D 4 HOH A 173 551 173 HOH HOH . D 4 HOH A 174 552 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PN TXD . . . C 3 6.393 47.59 18.977 0.75 39.29 ? PN TXD 600 A 1 HETATM 2 O O1N TXD . . . C 3 5.238 46.725 18.48 0.75 39.07 ? O1N TXD 600 A 1 HETATM 3 O O2N TXD . . . C 3 7.795 47.22 18.541 0.75 38.8 ? O2N TXD 600 A 1 HETATM 4 O O3 TXD . . . C 3 6.202 49.064 18.396 0.75 39.34 ? O3 TXD 600 A 1 HETATM 5 P PA TXD . . . C 3 5.694 49.35 16.905 0.75 37.63 ? PA TXD 600 A 1 HETATM 6 O O2P TXD . . . C 3 6.493 48.417 16.025 0.75 37.21 ? O2P TXD 600 A 1 HETATM 7 O O1P TXD . . . C 3 4.199 49.51 16.882 0.75 32.82 ? O1P TXD 600 A 1 HETATM 8 O O5' TXD . . . C 3 6.215 50.829 16.636 1 38.44 ? O5' TXD 600 A 1 HETATM 9 C C5' TXD . . . C 3 7.62 51.079 16.577 1 39.62 ? C5' TXD 600 A 1 HETATM 10 C C4' TXD . . . C 3 7.806 52.603 16.589 1 40.43 ? C4' TXD 600 A 1 HETATM 11 C C3' TXD . . . C 3 7.512 53.249 17.943 1 41.74 ? C3' TXD 600 A 1 HETATM 12 O O3' TXD . . . C 3 8.564 53.185 18.901 1 43.87 ? O3' TXD 600 A 1 HETATM 13 C C2' TXD . . . C 3 7.022 54.649 17.613 1 41.88 ? C2' TXD 600 A 1 HETATM 14 O O2' TXD . . . C 3 8.094 55.59 17.46 1 41.13 ? O2' TXD 600 A 1 HETATM 15 C C1' TXD . . . C 3 6.297 54.406 16.277 1 40.46 ? C1' TXD 600 A 1 HETATM 16 O O4' TXD . . . C 3 6.815 53.19 15.729 1 40.76 ? O4' TXD 600 A 1 HETATM 17 N N9A TXD . . . C 3 4.807 54.278 16.4 1 39.58 ? N9A TXD 600 A 1 HETATM 18 C C4A TXD . . . C 3 4.009 55.321 16.619 1 39.21 ? C4A TXD 600 A 1 HETATM 19 N N3A TXD . . . C 3 4.313 56.636 16.777 1 38.6 ? N3A TXD 600 A 1 HETATM 20 C C2A TXD . . . C 3 3.339 57.546 16.983 1 40.69 ? C2A TXD 600 A 1 HETATM 21 N N1A TXD . . . C 3 2.039 57.158 17.038 1 43.66 ? N1A TXD 600 A 1 HETATM 22 C C6A TXD . . . C 3 1.653 55.846 16.883 1 42.69 ? C6A TXD 600 A 1 HETATM 23 N N6A TXD . . . C 3 0.312 55.572 16.958 1 41.19 ? N6A TXD 600 A 1 HETATM 24 C C5A TXD . . . C 3 2.672 54.865 16.654 1 41.56 ? C5A TXD 600 A 1 HETATM 25 N N7A TXD . . . C 3 2.719 53.499 16.466 1 40.04 ? N7A TXD 600 A 1 HETATM 26 C C8A TXD . . . C 3 4.033 53.16 16.3 1 39.85 ? C8A TXD 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #