data_3GXE
#
_model_server_result.job_id            FU-w9tQzlevZAY4vDuFgFg 
_model_server_result.datetime_utc      '2024-12-21 16:11:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    3GXE 
#
_exptl.entry_id    3GXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GXE 
_cell.length_a            56.57 
_cell.length_b            56.57 
_cell.length_c            152.661 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,H,I 1 1 
C,D,F,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 B CYS 518 1_555 A SG CYS 30 B CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 28 B CYS 543 1_555 A SG CYS 40 B CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 46 B CYS 561 1_555 A SG CYS 74 B CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 72 B CYS 587 1_555 A SG CYS 84 B CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 C SG CYS 3 A CYS 518 1_555 C SG CYS 30 A CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 C SG CYS 28 A CYS 543 1_555 C SG CYS 40 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 C SG CYS 46 A CYS 561 1_555 C SG CYS 74 A CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 72 A CYS 587 1_555 C SG CYS 84 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 E C1 NAG . B NAG 1 1_555 A ND2 ASN 27 B ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 B C LEU 8 F LEU 261 1_555 B N HZP 9 F HZP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 B C HZP 9 F HZP 262 1_555 B N GLY 10 F GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 F C1 NAG . A NAG 1 1_555 C ND2 ASN 27 A ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 D C LEU 8 E LEU 261 1_555 D N HYP 9 E HYP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 D C HYP 9 E HYP 262 1_555 D N GLY 10 E GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 286 n n 
C1 O1 NAG sing 287 n n 
C1 O5 NAG sing 288 n n 
C1 H1 NAG sing 289 n n 
C2 C3 NAG sing 290 n n 
C2 N2 NAG sing 291 n n 
C2 H2 NAG sing 292 n n 
C3 C4 NAG sing 293 n n 
C3 O3 NAG sing 294 n n 
C3 H3 NAG sing 295 n n 
C4 C5 NAG sing 296 n n 
C4 O4 NAG sing 297 n n 
C4 H4 NAG sing 298 n n 
C5 C6 NAG sing 299 n n 
C5 O5 NAG sing 300 n n 
C5 H5 NAG sing 301 n n 
C6 O6 NAG sing 302 n n 
C6 H61 NAG sing 303 n n 
C6 H62 NAG sing 304 n n 
C7 C8 NAG sing 305 n n 
C7 N2 NAG sing 306 n n 
C7 O7 NAG doub 307 n n 
C8 H81 NAG sing 308 n n 
C8 H82 NAG sing 309 n n 
C8 H83 NAG sing 310 n n 
N2 HN2 NAG sing 311 n n 
O1 HO1 NAG sing 312 n n 
O3 HO3 NAG sing 313 n n 
O4 HO4 NAG sing 314 n n 
O6 HO6 NAG sing 315 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3GXE 
_atom_sites.fract_transf_matrix[1][1]    0.017677 
_atom_sites.fract_transf_matrix[1][2]    0.010206 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG B 1 1 1 NAG NAG . 
F 4 NAG A 1 1 1 NAG NAG . 
G 5 GOL A 1 609 1 GOL GOL . 
H 6 HOH B 1 2 2 HOH HOH . 
H 6 HOH B 2 3 3 HOH HOH . 
H 6 HOH B 3 4 4 HOH HOH . 
H 6 HOH B 4 5 5 HOH HOH . 
H 6 HOH B 5 6 6 HOH HOH . 
H 6 HOH B 6 8 8 HOH HOH . 
H 6 HOH B 7 16 16 HOH HOH . 
H 6 HOH B 8 17 17 HOH HOH . 
H 6 HOH B 9 25 25 HOH HOH . 
H 6 HOH B 10 30 30 HOH HOH . 
H 6 HOH B 11 31 31 HOH HOH . 
H 6 HOH B 12 41 41 HOH HOH . 
H 6 HOH B 13 42 42 HOH HOH . 
H 6 HOH B 14 54 54 HOH HOH . 
H 6 HOH B 15 55 55 HOH HOH . 
H 6 HOH B 16 61 61 HOH HOH . 
H 6 HOH B 17 609 1 HOH HOH . 
H 6 HOH B 18 610 1 HOH HOH . 
H 6 HOH B 19 611 3 HOH HOH . 
H 6 HOH B 20 612 5 HOH HOH . 
H 6 HOH B 21 613 6 HOH HOH . 
I 6 HOH F 1 2 2 HOH HOH . 
I 6 HOH F 2 23 23 HOH HOH . 
J 6 HOH A 1 2 2 HOH HOH . 
J 6 HOH A 2 3 3 HOH HOH . 
J 6 HOH A 3 4 4 HOH HOH . 
J 6 HOH A 4 7 7 HOH HOH . 
J 6 HOH A 5 8 8 HOH HOH . 
J 6 HOH A 6 10 10 HOH HOH . 
J 6 HOH A 7 14 14 HOH HOH . 
J 6 HOH A 8 18 18 HOH HOH . 
J 6 HOH A 9 21 21 HOH HOH . 
J 6 HOH A 10 22 22 HOH HOH . 
J 6 HOH A 11 33 33 HOH HOH . 
J 6 HOH A 12 35 35 HOH HOH . 
J 6 HOH A 13 38 38 HOH HOH . 
J 6 HOH A 14 49 49 HOH HOH . 
J 6 HOH A 15 60 60 HOH HOH . 
J 6 HOH A 16 610 7 HOH HOH . 
J 6 HOH A 17 611 10 HOH HOH . 
J 6 HOH A 18 612 1 HOH HOH . 
K 6 HOH E 1 11 11 HOH HOH . 
K 6 HOH E 2 26 26 HOH HOH . 
K 6 HOH E 3 47 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 4 34.554 -22.138 -22.677 1 37.97 ? C1 NAG 1 B 1 
HETATM 2 C C2 NAG . . . E 4 33.825 -22.812 -23.84 1 44.76 ? C2 NAG 1 B 1 
HETATM 3 C C3 NAG . . . E 4 33.721 -24.318 -23.668 1 39.63 ? C3 NAG 1 B 1 
HETATM 4 C C4 NAG . . . E 4 35.079 -24.9 -23.328 1 54 ? C4 NAG 1 B 1 
HETATM 5 C C5 NAG . . . E 4 35.64 -24.201 -22.1 1 49.52 ? C5 NAG 1 B 1 
HETATM 6 C C6 NAG . . . E 4 37.008 -24.771 -21.745 1 52.76 ? C6 NAG 1 B 1 
HETATM 7 C C7 NAG . . . E 4 32.104 -21.713 -25.136 1 41.22 ? C7 NAG 1 B 1 
HETATM 8 C C8 NAG . . . E 4 30.63 -21.501 -25.315 1 32.11 ? C8 NAG 1 B 1 
HETATM 9 N N2 NAG . . . E 4 32.49 -22.273 -23.994 1 28.5 ? N2 NAG 1 B 1 
HETATM 10 O O3 NAG . . . E 4 33.245 -24.888 -24.86 1 38.76 ? O3 NAG 1 B 1 
HETATM 11 O O4 NAG . . . E 4 34.954 -26.28 -23.069 1 64.22 ? O4 NAG 1 B 1 
HETATM 12 O O5 NAG . . . E 4 35.751 -22.811 -22.332 1 39.59 ? O5 NAG 1 B 1 
HETATM 13 O O6 NAG . . . E 4 37.538 -24.079 -20.636 1 63.57 ? O6 NAG 1 B 1 
HETATM 14 O O7 NAG . . . E 4 32.899 -21.377 -26.011 1 40.94 ? O7 NAG 1 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#