data_3GXE # _model_server_result.job_id yG01_iiX0apw5vtSiMW0Mw _model_server_result.datetime_utc '2024-12-21 15:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":609}' # _entry.id 3GXE # _exptl.entry_id 3GXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GXE _cell.length_a 56.57 _cell.length_b 56.57 _cell.length_c 152.661 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 B CYS 518 1_555 A SG CYS 30 B CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 28 B CYS 543 1_555 A SG CYS 40 B CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 46 B CYS 561 1_555 A SG CYS 74 B CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 72 B CYS 587 1_555 A SG CYS 84 B CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 3 A CYS 518 1_555 C SG CYS 30 A CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 28 A CYS 543 1_555 C SG CYS 40 A CYS 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 C SG CYS 46 A CYS 561 1_555 C SG CYS 74 A CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 72 A CYS 587 1_555 C SG CYS 84 A CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 E C1 NAG . B NAG 1 1_555 A ND2 ASN 27 B ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B C LEU 8 F LEU 261 1_555 B N HZP 9 F HZP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C HZP 9 F HZP 262 1_555 B N GLY 10 F GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 F C1 NAG . A NAG 1 1_555 C ND2 ASN 27 A ASN 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 D C LEU 8 E LEU 261 1_555 D N HYP 9 E HYP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 D C HYP 9 E HYP 262 1_555 D N GLY 10 E GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3GXE _atom_sites.fract_transf_matrix[1][1] 0.017677 _atom_sites.fract_transf_matrix[1][2] 0.010206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG B 1 1 1 NAG NAG . F 4 NAG A 1 1 1 NAG NAG . G 5 GOL A 1 609 1 GOL GOL . H 6 HOH B 1 2 2 HOH HOH . H 6 HOH B 2 3 3 HOH HOH . H 6 HOH B 3 4 4 HOH HOH . H 6 HOH B 4 5 5 HOH HOH . H 6 HOH B 5 6 6 HOH HOH . H 6 HOH B 6 8 8 HOH HOH . H 6 HOH B 7 16 16 HOH HOH . H 6 HOH B 8 17 17 HOH HOH . H 6 HOH B 9 25 25 HOH HOH . H 6 HOH B 10 30 30 HOH HOH . H 6 HOH B 11 31 31 HOH HOH . H 6 HOH B 12 41 41 HOH HOH . H 6 HOH B 13 42 42 HOH HOH . H 6 HOH B 14 54 54 HOH HOH . H 6 HOH B 15 55 55 HOH HOH . H 6 HOH B 16 61 61 HOH HOH . H 6 HOH B 17 609 1 HOH HOH . H 6 HOH B 18 610 1 HOH HOH . H 6 HOH B 19 611 3 HOH HOH . H 6 HOH B 20 612 5 HOH HOH . H 6 HOH B 21 613 6 HOH HOH . I 6 HOH F 1 2 2 HOH HOH . I 6 HOH F 2 23 23 HOH HOH . J 6 HOH A 1 2 2 HOH HOH . J 6 HOH A 2 3 3 HOH HOH . J 6 HOH A 3 4 4 HOH HOH . J 6 HOH A 4 7 7 HOH HOH . J 6 HOH A 5 8 8 HOH HOH . J 6 HOH A 6 10 10 HOH HOH . J 6 HOH A 7 14 14 HOH HOH . J 6 HOH A 8 18 18 HOH HOH . J 6 HOH A 9 21 21 HOH HOH . J 6 HOH A 10 22 22 HOH HOH . J 6 HOH A 11 33 33 HOH HOH . J 6 HOH A 12 35 35 HOH HOH . J 6 HOH A 13 38 38 HOH HOH . J 6 HOH A 14 49 49 HOH HOH . J 6 HOH A 15 60 60 HOH HOH . J 6 HOH A 16 610 7 HOH HOH . J 6 HOH A 17 611 10 HOH HOH . J 6 HOH A 18 612 1 HOH HOH . K 6 HOH E 1 11 11 HOH HOH . K 6 HOH E 2 26 26 HOH HOH . K 6 HOH E 3 47 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 40.641 -26.952 -23.109 1 102.24 ? C1 GOL 609 A 1 HETATM 2 O O1 GOL . . . G 5 40.62 -26.021 -22.05 1 91.07 ? O1 GOL 609 A 1 HETATM 3 C C2 GOL . . . G 5 39.33 -27.73 -23.147 1 105.15 ? C2 GOL 609 A 1 HETATM 4 O O2 GOL . . . G 5 39.508 -28.994 -22.548 1 98.1 ? O2 GOL 609 A 1 HETATM 5 C C3 GOL . . . G 5 38.894 -27.914 -24.597 1 112.31 ? C3 GOL 609 A 1 HETATM 6 O O3 GOL . . . G 5 37.921 -28.933 -24.676 1 115.26 ? O3 GOL 609 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #