data_3GXP # _model_server_result.job_id 1gZAGr_KCgBv0VmA84Hmkw _model_server_result.datetime_utc '2024-11-15 07:05:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 3GXP # _exptl.entry_id 3GXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GXP _cell.length_a 89.51 _cell.length_b 89.51 _cell.length_c 215.927 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG F 692 NAG 2 n C NAG 2 C 2 NAG F 693 NAG 2 n C MAN 3 C 3 MAN F 694 MAN 3 n D NAG 1 D 1 NAG G 715 NAG 3 n D NAG 2 D 2 NAG G 716 NAG 3 n E NAG 1 E 1 NAG I 639 NAG 3 n E NAG 2 E 2 NAG I 640 NAG 3 n F NAG 1 F 1 NAG J 692 NAG 3 n F NAG 2 F 2 NAG J 693 NAG 3 n G NAG 1 G 1 NAG K 715 NAG 3 n G NAG 2 G 2 NAG K 716 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 52 1_555 A SG CYS 63 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 25 A CYS 56 1_555 A SG CYS 32 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 111 A CYS 142 1_555 A SG CYS 141 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 A SG CYS 171 A CYS 202 1_555 A SG CYS 192 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf5 A SG CYS 347 A CYS 378 1_555 A SG CYS 351 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 B SG CYS 21 B CYS 52 1_555 B SG CYS 63 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 B SG CYS 25 B CYS 56 1_555 B SG CYS 32 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 111 B CYS 142 1_555 B SG CYS 141 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 171 B CYS 202 1_555 B SG CYS 192 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 B SG CYS 347 B CYS 378 1_555 B SG CYS 351 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 108 A ASN 139 1_555 K C1 NAG . A NAG 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 161 A ASN 192 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 B ND2 ASN 108 B ASN 139 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 B ND2 ASN 161 B ASN 192 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 B ND2 ASN 184 B ASN 215 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 368 n n S O2 SO4 doub 369 n n S O3 SO4 sing 370 n n S O4 SO4 sing 371 n n # _atom_sites.entry_id 3GXP _atom_sites.fract_transf_matrix[1][1] 0.011172 _atom_sites.fract_transf_matrix[1][2] 0.00645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 SO4 A 1 1 1 SO4 SO4 . I 5 GLA A 1 3681 3681 GLA GLA . J 6 TAM A 1 6744 6744 TAM TAM . K 7 NAG A 1 498 498 NAG NAG . L 7 NAG A 1 430 498 NAG NAG . M 4 SO4 B 1 2 2 SO4 SO4 . N 4 SO4 B 1 3 3 SO4 SO4 . O 4 SO4 B 1 4 4 SO4 SO4 . P 8 MAN B 1 694 694 MAN MAN . Q 8 MAN B 1 695 695 MAN MAN . R 5 GLA B 1 3681 3681 GLA GLA . S 9 HOH A 1 2 2 HOH HOH . S 9 HOH A 2 8 8 HOH HOH . S 9 HOH A 3 13 13 HOH HOH . S 9 HOH A 4 17 17 HOH HOH . S 9 HOH A 5 18 18 HOH HOH . S 9 HOH A 6 20 20 HOH HOH . S 9 HOH A 7 21 21 HOH HOH . S 9 HOH A 8 22 22 HOH HOH . S 9 HOH A 9 26 26 HOH HOH . S 9 HOH A 10 27 27 HOH HOH . S 9 HOH A 11 31 31 HOH HOH . S 9 HOH A 12 3399 3399 HOH HOH . S 9 HOH A 13 3400 3400 HOH HOH . S 9 HOH A 14 3401 34 HOH HOH . S 9 HOH A 15 3402 35 HOH HOH . S 9 HOH A 16 3403 3403 HOH HOH . S 9 HOH A 17 3404 37 HOH HOH . S 9 HOH A 18 3405 38 HOH HOH . S 9 HOH A 19 3406 3406 HOH HOH . S 9 HOH A 20 3410 3410 HOH HOH . S 9 HOH A 21 3412 3412 HOH HOH . S 9 HOH A 22 3415 3415 HOH HOH . S 9 HOH A 23 3417 3417 HOH HOH . S 9 HOH A 24 3419 3419 HOH HOH . S 9 HOH A 25 3420 3420 HOH HOH . S 9 HOH A 26 3422 3422 HOH HOH . S 9 HOH A 27 3426 3426 HOH HOH . S 9 HOH A 28 3427 3427 HOH HOH . S 9 HOH A 29 3430 3430 HOH HOH . S 9 HOH A 30 3431 3431 HOH HOH . S 9 HOH A 31 3432 3432 HOH HOH . S 9 HOH A 32 3433 3433 HOH HOH . S 9 HOH A 33 3435 3435 HOH HOH . S 9 HOH A 34 3439 3439 HOH HOH . S 9 HOH A 35 3440 3440 HOH HOH . S 9 HOH A 36 3441 3441 HOH HOH . S 9 HOH A 37 3442 3442 HOH HOH . S 9 HOH A 38 3443 3443 HOH HOH . S 9 HOH A 39 3444 3444 HOH HOH . S 9 HOH A 40 3445 3445 HOH HOH . S 9 HOH A 41 3446 3446 HOH HOH . S 9 HOH A 42 3447 3447 HOH HOH . S 9 HOH A 43 3450 3450 HOH HOH . S 9 HOH A 44 3454 3454 HOH HOH . S 9 HOH A 45 3455 3455 HOH HOH . S 9 HOH A 46 3457 3457 HOH HOH . S 9 HOH A 47 3458 3458 HOH HOH . S 9 HOH A 48 3459 3459 HOH HOH . S 9 HOH A 49 3461 3461 HOH HOH . S 9 HOH A 50 3462 3462 HOH HOH . S 9 HOH A 51 3463 3463 HOH HOH . S 9 HOH A 52 3465 3465 HOH HOH . S 9 HOH A 53 3466 3466 HOH HOH . S 9 HOH A 54 3471 3471 HOH HOH . S 9 HOH A 55 3474 3474 HOH HOH . S 9 HOH A 56 3475 3475 HOH HOH . S 9 HOH A 57 3476 3476 HOH HOH . S 9 HOH A 58 3478 3478 HOH HOH . S 9 HOH A 59 3479 3479 HOH HOH . S 9 HOH A 60 3481 3481 HOH HOH . S 9 HOH A 61 3483 3483 HOH HOH . S 9 HOH A 62 3484 3484 HOH HOH . S 9 HOH A 63 3485 3485 HOH HOH . S 9 HOH A 64 3486 3486 HOH HOH . S 9 HOH A 65 3487 3487 HOH HOH . S 9 HOH A 66 3489 3489 HOH HOH . S 9 HOH A 67 3496 3496 HOH HOH . S 9 HOH A 68 3497 3497 HOH HOH . S 9 HOH A 69 3682 3682 HOH HOH . S 9 HOH A 70 3684 3684 HOH HOH . S 9 HOH A 71 3685 3685 HOH HOH . S 9 HOH A 72 3692 3692 HOH HOH . S 9 HOH A 73 3693 3693 HOH HOH . S 9 HOH A 74 3694 3694 HOH HOH . S 9 HOH A 75 3695 3695 HOH HOH . S 9 HOH A 76 6745 6745 HOH HOH . S 9 HOH A 77 6747 6747 HOH HOH . S 9 HOH A 78 6748 6748 HOH HOH . S 9 HOH A 79 6751 6751 HOH HOH . S 9 HOH A 80 6752 6752 HOH HOH . S 9 HOH A 81 6754 6754 HOH HOH . S 9 HOH A 82 6757 6757 HOH HOH . S 9 HOH A 83 6758 6758 HOH HOH . S 9 HOH A 84 6759 6759 HOH HOH . S 9 HOH A 85 6760 6760 HOH HOH . S 9 HOH A 86 6767 6767 HOH HOH . T 9 HOH B 1 5 5 HOH HOH . T 9 HOH B 2 6 6 HOH HOH . T 9 HOH B 3 7 7 HOH HOH . T 9 HOH B 4 9 9 HOH HOH . T 9 HOH B 5 10 10 HOH HOH . T 9 HOH B 6 11 11 HOH HOH . T 9 HOH B 7 12 12 HOH HOH . T 9 HOH B 8 19 19 HOH HOH . T 9 HOH B 9 23 23 HOH HOH . T 9 HOH B 10 24 24 HOH HOH . T 9 HOH B 11 25 25 HOH HOH . T 9 HOH B 12 28 28 HOH HOH . T 9 HOH B 13 3398 3398 HOH HOH . T 9 HOH B 14 3399 3 HOH HOH . T 9 HOH B 15 3400 39 HOH HOH . T 9 HOH B 16 3402 3402 HOH HOH . T 9 HOH B 17 3404 3404 HOH HOH . T 9 HOH B 18 3405 3405 HOH HOH . T 9 HOH B 19 3407 3407 HOH HOH . T 9 HOH B 20 3408 3408 HOH HOH . T 9 HOH B 21 3409 3409 HOH HOH . T 9 HOH B 22 3411 3411 HOH HOH . T 9 HOH B 23 3413 3413 HOH HOH . T 9 HOH B 24 3414 3414 HOH HOH . T 9 HOH B 25 3416 3416 HOH HOH . T 9 HOH B 26 3423 3423 HOH HOH . T 9 HOH B 27 3424 3424 HOH HOH . T 9 HOH B 28 3425 3425 HOH HOH . T 9 HOH B 29 3436 3436 HOH HOH . T 9 HOH B 30 3437 3437 HOH HOH . T 9 HOH B 31 3438 3438 HOH HOH . T 9 HOH B 32 3448 3448 HOH HOH . T 9 HOH B 33 3449 3449 HOH HOH . T 9 HOH B 34 3451 3451 HOH HOH . T 9 HOH B 35 3452 3452 HOH HOH . T 9 HOH B 36 3453 3453 HOH HOH . T 9 HOH B 37 3456 3456 HOH HOH . T 9 HOH B 38 3460 3460 HOH HOH . T 9 HOH B 39 3464 3464 HOH HOH . T 9 HOH B 40 3467 3467 HOH HOH . T 9 HOH B 41 3468 3468 HOH HOH . T 9 HOH B 42 3470 3470 HOH HOH . T 9 HOH B 43 3472 3472 HOH HOH . T 9 HOH B 44 3473 3473 HOH HOH . T 9 HOH B 45 3477 3477 HOH HOH . T 9 HOH B 46 3480 3480 HOH HOH . T 9 HOH B 47 3482 3482 HOH HOH . T 9 HOH B 48 3488 3488 HOH HOH . T 9 HOH B 49 3491 3491 HOH HOH . T 9 HOH B 50 3492 3492 HOH HOH . T 9 HOH B 51 3493 3493 HOH HOH . T 9 HOH B 52 3494 3494 HOH HOH . T 9 HOH B 53 3498 3498 HOH HOH . T 9 HOH B 54 3687 3687 HOH HOH . T 9 HOH B 55 3688 3688 HOH HOH . T 9 HOH B 56 3689 3689 HOH HOH . T 9 HOH B 57 3690 3690 HOH HOH . T 9 HOH B 58 3691 3691 HOH HOH . T 9 HOH B 59 3696 3696 HOH HOH . T 9 HOH B 60 6746 6746 HOH HOH . T 9 HOH B 61 6749 6749 HOH HOH . T 9 HOH B 62 6750 6750 HOH HOH . T 9 HOH B 63 6753 6753 HOH HOH . T 9 HOH B 64 6755 6755 HOH HOH . T 9 HOH B 65 6756 6756 HOH HOH . T 9 HOH B 66 6761 6761 HOH HOH . T 9 HOH B 67 6762 6762 HOH HOH . T 9 HOH B 68 6763 6763 HOH HOH . T 9 HOH B 69 6764 6764 HOH HOH . T 9 HOH B 70 6765 6765 HOH HOH . T 9 HOH B 71 6766 6766 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 -49.591 48.458 -10.1 1 71.17 ? S SO4 1 A 1 HETATM 2 O O1 SO4 . . . H 4 -48.63 47.589 -10.748 1 71.86 ? O1 SO4 1 A 1 HETATM 3 O O2 SO4 . . . H 4 -49.887 49.544 -11.037 1 73.48 ? O2 SO4 1 A 1 HETATM 4 O O3 SO4 . . . H 4 -50.716 47.583 -9.75 1 69.38 ? O3 SO4 1 A 1 HETATM 5 O O4 SO4 . . . H 4 -49.094 49.199 -8.963 1 71.02 ? O4 SO4 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #