data_3GXT
#
_model_server_result.job_id            -OoaMtmH1fEyCogwIWVjcA 
_model_server_result.datetime_utc      '2024-11-22 04:52:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gxt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":4}' 
#
_entry.id    3GXT 
#
_exptl.entry_id    3GXT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GXT 
_cell.length_a            89.61 
_cell.length_b            89.61 
_cell.length_c            216.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GXT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 N N N 
? 6 O N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
5 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 2 1 MAN MAN C1 O1 . O3 HO3 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
5 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 
6 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
7 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG D 639 NAG 
2 n C NAG 2 C 2 NAG D 640 NAG 
2 n D NAG 1 D 1 NAG E 692 NAG 
2 n D NAG 2 D 2 NAG E 693 NAG 
3 n E MAN 1 E 1 MAN E 694 MAN 
3 n E MAN 2 E 2 MAN E 696 MAN 
2 n F NAG 1 F 1 NAG H 715 NAG 
2 n F NAG 2 F 2 NAG H 716 NAG 
4 n G NAG 1 G 1 NAG J 692 NAG 
4 n G NAG 2 G 2 NAG J 693 NAG 
4 n G MAN 3 G 3 MAN J 694 MAN 
4 n G MAN 4 G 4 MAN J 695 MAN 
5 n H NAG 1 H 1 NAG K 715 NAG 
5 n H NAG 2 H 2 NAG K 716 NAG 
5 n H MAN 3 H 3 MAN K 717 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 52 1_555 A SG CYS 63 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf2 A SG CYS 25 A CYS 56 1_555 A SG CYS 32 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf3 A SG CYS 111 A CYS 142 1_555 A SG CYS 141 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
disulf ? disulf4 A SG CYS 171 A CYS 202 1_555 A SG CYS 192 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf5 A SG CYS 347 A CYS 378 1_555 A SG CYS 351 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 B SG CYS 21 B CYS 52 1_555 B SG CYS 63 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf7 B SG CYS 25 B CYS 56 1_555 B SG CYS 32 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf8 B SG CYS 111 B CYS 142 1_555 B SG CYS 141 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf9 B SG CYS 171 B CYS 202 1_555 B SG CYS 192 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf10 B SG CYS 347 B CYS 378 1_555 B SG CYS 351 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 A ND2 ASN 108 A ASN 139 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale2 A ND2 ASN 161 A ASN 192 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale3 A ND2 ASN 184 A ASN 215 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale4 B ND2 ASN 161 B ASN 192 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 E O3 MAN . E MAN 1 1_555 E C1 MAN . E MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale9 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale10 G O4 NAG . G NAG 2 1_555 G C1 MAN . G MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale11 G O3 MAN . G MAN 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale12 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale13 H O4 NAG . H NAG 2 1_555 H C1 MAN . H MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 368 n n 
S O2 SO4 doub 369 n n 
S O3 SO4 sing 370 n n 
S O4 SO4 sing 371 n n 
#
_atom_sites.entry_id                     3GXT 
_atom_sites.fract_transf_matrix[1][1]    0.011159 
_atom_sites.fract_transf_matrix[1][2]    0.006443 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 SO4 A 1 1 1 SO4 SO4 . 
J 6 SO4 A 1 2 2 SO4 SO4 . 
K 6 SO4 A 1 5 5 SO4 SO4 . 
L 7 NOJ A 1 430 1 NOJ NOJ . 
M 8 NAG B 1 639 639 NAG NAG . 
N 6 SO4 B 1 3 3 SO4 SO4 . 
O 6 SO4 B 1 4 4 SO4 SO4 . 
P 7 NOJ B 1 1 1 NOJ NOJ . 
Q 9 HOH A 1 3 3 HOH HOH . 
Q 9 HOH A 2 4 4 HOH HOH . 
Q 9 HOH A 3 8 8 HOH HOH . 
Q 9 HOH A 4 9 9 HOH HOH . 
Q 9 HOH A 5 11 11 HOH HOH . 
Q 9 HOH A 6 12 12 HOH HOH . 
Q 9 HOH A 7 15 15 HOH HOH . 
Q 9 HOH A 8 16 16 HOH HOH . 
Q 9 HOH A 9 18 18 HOH HOH . 
Q 9 HOH A 10 19 19 HOH HOH . 
Q 9 HOH A 11 23 23 HOH HOH . 
Q 9 HOH A 12 25 25 HOH HOH . 
Q 9 HOH A 13 26 26 HOH HOH . 
Q 9 HOH A 14 30 30 HOH HOH . 
Q 9 HOH A 15 431 5 HOH HOH . 
Q 9 HOH A 16 432 32 HOH HOH . 
Q 9 HOH A 17 433 34 HOH HOH . 
Q 9 HOH A 18 434 36 HOH HOH . 
Q 9 HOH A 19 435 41 HOH HOH . 
Q 9 HOH A 20 436 42 HOH HOH . 
Q 9 HOH A 21 437 44 HOH HOH . 
Q 9 HOH A 22 438 48 HOH HOH . 
Q 9 HOH A 23 439 49 HOH HOH . 
Q 9 HOH A 24 440 51 HOH HOH . 
Q 9 HOH A 25 441 52 HOH HOH . 
Q 9 HOH A 26 442 53 HOH HOH . 
Q 9 HOH A 27 443 54 HOH HOH . 
Q 9 HOH A 28 444 55 HOH HOH . 
Q 9 HOH A 29 445 62 HOH HOH . 
Q 9 HOH A 30 446 63 HOH HOH . 
Q 9 HOH A 31 447 64 HOH HOH . 
Q 9 HOH A 32 448 67 HOH HOH . 
Q 9 HOH A 33 449 70 HOH HOH . 
Q 9 HOH A 34 450 74 HOH HOH . 
Q 9 HOH A 35 451 78 HOH HOH . 
Q 9 HOH A 36 452 79 HOH HOH . 
R 9 HOH B 1 6 6 HOH HOH . 
R 9 HOH B 2 7 7 HOH HOH . 
R 9 HOH B 3 10 10 HOH HOH . 
R 9 HOH B 4 13 13 HOH HOH . 
R 9 HOH B 5 14 14 HOH HOH . 
R 9 HOH B 6 17 17 HOH HOH . 
R 9 HOH B 7 21 21 HOH HOH . 
R 9 HOH B 8 24 24 HOH HOH . 
R 9 HOH B 9 27 27 HOH HOH . 
R 9 HOH B 10 28 28 HOH HOH . 
R 9 HOH B 11 31 31 HOH HOH . 
R 9 HOH B 12 430 37 HOH HOH . 
R 9 HOH B 13 431 38 HOH HOH . 
R 9 HOH B 14 432 40 HOH HOH . 
R 9 HOH B 15 433 43 HOH HOH . 
R 9 HOH B 16 434 45 HOH HOH . 
R 9 HOH B 17 435 47 HOH HOH . 
R 9 HOH B 18 436 50 HOH HOH . 
R 9 HOH B 19 437 56 HOH HOH . 
R 9 HOH B 20 438 57 HOH HOH . 
R 9 HOH B 21 439 59 HOH HOH . 
R 9 HOH B 22 440 60 HOH HOH . 
R 9 HOH B 23 441 65 HOH HOH . 
R 9 HOH B 24 442 66 HOH HOH . 
R 9 HOH B 25 443 72 HOH HOH . 
R 9 HOH B 26 444 73 HOH HOH . 
R 9 HOH B 27 445 75 HOH HOH . 
R 9 HOH B 28 446 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . O 6 35.786 55.503 69.146 1 83.09 ? S SO4 4 B 1 
HETATM 2 O O1 SO4 . . . O 6 37.043 55.883 68.498 1 81.93 ? O1 SO4 4 B 1 
HETATM 3 O O2 SO4 . . . O 6 35.334 54.204 68.646 1 83.11 ? O2 SO4 4 B 1 
HETATM 4 O O3 SO4 . . . O 6 35.963 55.422 70.616 1 82.77 ? O3 SO4 4 B 1 
HETATM 5 O O4 SO4 . . . O 6 34.752 56.484 68.785 1 83.37 ? O4 SO4 4 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#