data_3GXY # _model_server_result.job_id 567TX2gB0wHQW5FbTbVHBA _model_server_result.datetime_utc '2024-10-19 22:32:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 3GXY # _exptl.entry_id 3GXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GXY _cell.length_a 61.352 _cell.length_b 61.352 _cell.length_c 147.568 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN OPM C1 O1 . O3 HO3 . sing 2 ? 2 3 2 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C OPM 1 C 1 OPM C 503 OPM 2 n C MAN 2 C 2 MAN C 504 MAN 2 n C MAN 3 C 3 MAN C 505 MAN 2 n D OPM 1 D 1 OPM D 603 OPM 2 n D MAN 2 D 2 MAN D 604 MAN 2 n D MAN 3 D 3 MAN D 605 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 58 A CYS 58 1_555 A SG CYS 73 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 B SG CYS 58 B CYS 58 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 C O3 OPM . C OPM 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C O2 MAN . C MAN 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 D O3 OPM . D OPM 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 D O2 MAN . D MAN 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GXY _atom_sites.fract_transf_matrix[1][1] 0.016299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NHE A 1 301 301 NHE NHE . F 4 MG A 1 102 1 MG MG . G 5 HOH A 1 103 1 HOH HOH . G 5 HOH A 2 104 4 HOH HOH . G 5 HOH A 3 105 7 HOH HOH . G 5 HOH A 4 106 8 HOH HOH . G 5 HOH A 5 107 10 HOH HOH . G 5 HOH A 6 108 17 HOH HOH . G 5 HOH A 7 109 19 HOH HOH . G 5 HOH A 8 110 21 HOH HOH . G 5 HOH A 9 111 22 HOH HOH . G 5 HOH A 10 112 25 HOH HOH . G 5 HOH A 11 113 26 HOH HOH . G 5 HOH A 12 114 28 HOH HOH . G 5 HOH A 13 115 30 HOH HOH . G 5 HOH A 14 116 32 HOH HOH . G 5 HOH A 15 117 33 HOH HOH . G 5 HOH A 16 118 34 HOH HOH . G 5 HOH A 17 119 35 HOH HOH . G 5 HOH A 18 120 37 HOH HOH . G 5 HOH A 19 121 38 HOH HOH . G 5 HOH A 20 122 39 HOH HOH . G 5 HOH A 21 123 40 HOH HOH . G 5 HOH A 22 124 42 HOH HOH . G 5 HOH A 23 125 43 HOH HOH . G 5 HOH A 24 126 44 HOH HOH . G 5 HOH A 25 127 45 HOH HOH . G 5 HOH A 26 128 47 HOH HOH . G 5 HOH A 27 129 48 HOH HOH . G 5 HOH A 28 130 50 HOH HOH . G 5 HOH A 29 131 54 HOH HOH . G 5 HOH A 30 132 55 HOH HOH . G 5 HOH A 31 133 57 HOH HOH . G 5 HOH A 32 134 61 HOH HOH . G 5 HOH A 33 135 63 HOH HOH . G 5 HOH A 34 136 67 HOH HOH . G 5 HOH A 35 137 68 HOH HOH . G 5 HOH A 36 138 69 HOH HOH . G 5 HOH A 37 139 70 HOH HOH . G 5 HOH A 38 140 71 HOH HOH . G 5 HOH A 39 141 73 HOH HOH . G 5 HOH A 40 142 74 HOH HOH . G 5 HOH A 41 143 77 HOH HOH . G 5 HOH A 42 144 78 HOH HOH . G 5 HOH A 43 145 79 HOH HOH . G 5 HOH A 44 146 82 HOH HOH . G 5 HOH A 45 147 89 HOH HOH . G 5 HOH A 46 148 92 HOH HOH . G 5 HOH A 47 149 94 HOH HOH . G 5 HOH A 48 150 96 HOH HOH . G 5 HOH A 49 151 97 HOH HOH . G 5 HOH A 50 152 99 HOH HOH . H 5 HOH B 1 102 102 HOH HOH . H 5 HOH B 2 103 103 HOH HOH . H 5 HOH B 3 104 104 HOH HOH . H 5 HOH B 4 105 2 HOH HOH . H 5 HOH B 5 106 3 HOH HOH . H 5 HOH B 6 107 5 HOH HOH . H 5 HOH B 7 108 6 HOH HOH . H 5 HOH B 8 109 9 HOH HOH . H 5 HOH B 9 110 11 HOH HOH . H 5 HOH B 10 111 12 HOH HOH . H 5 HOH B 11 112 13 HOH HOH . H 5 HOH B 12 113 14 HOH HOH . H 5 HOH B 13 114 15 HOH HOH . H 5 HOH B 14 115 16 HOH HOH . H 5 HOH B 15 116 18 HOH HOH . H 5 HOH B 16 117 20 HOH HOH . H 5 HOH B 17 118 23 HOH HOH . H 5 HOH B 18 119 24 HOH HOH . H 5 HOH B 19 120 27 HOH HOH . H 5 HOH B 20 121 29 HOH HOH . H 5 HOH B 21 122 31 HOH HOH . H 5 HOH B 22 123 36 HOH HOH . H 5 HOH B 23 124 41 HOH HOH . H 5 HOH B 24 125 46 HOH HOH . H 5 HOH B 25 126 49 HOH HOH . H 5 HOH B 26 127 51 HOH HOH . H 5 HOH B 27 128 52 HOH HOH . H 5 HOH B 28 129 53 HOH HOH . H 5 HOH B 29 130 56 HOH HOH . H 5 HOH B 30 131 58 HOH HOH . H 5 HOH B 31 132 59 HOH HOH . H 5 HOH B 32 133 60 HOH HOH . H 5 HOH B 33 134 62 HOH HOH . H 5 HOH B 34 135 64 HOH HOH . H 5 HOH B 35 136 65 HOH HOH . H 5 HOH B 36 137 66 HOH HOH . H 5 HOH B 37 138 72 HOH HOH . H 5 HOH B 38 139 75 HOH HOH . H 5 HOH B 39 140 76 HOH HOH . H 5 HOH B 40 141 80 HOH HOH . H 5 HOH B 41 142 81 HOH HOH . H 5 HOH B 42 143 83 HOH HOH . H 5 HOH B 43 144 84 HOH HOH . H 5 HOH B 44 145 85 HOH HOH . H 5 HOH B 45 146 86 HOH HOH . H 5 HOH B 46 147 87 HOH HOH . H 5 HOH B 47 148 88 HOH HOH . H 5 HOH B 48 149 90 HOH HOH . H 5 HOH B 49 150 91 HOH HOH . H 5 HOH B 50 151 93 HOH HOH . H 5 HOH B 51 152 95 HOH HOH . H 5 HOH B 52 153 98 HOH HOH . H 5 HOH B 53 154 100 HOH HOH . H 5 HOH B 54 155 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.078 _atom_site.Cartn_y 35.412 _atom_site.Cartn_z 119.442 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #