data_3GXZ # _model_server_result.job_id uL59sVNFYmz3OOFzQouGIw _model_server_result.datetime_utc '2024-11-12 20:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 3GXZ # _exptl.entry_id 3GXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GXZ _cell.length_a 61.512 _cell.length_b 61.512 _cell.length_c 147.95 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 2 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 2 8 7 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 2 9 8 MAN MAN C1 O1 . O2 HO2 . sing 9 ? 2 10 7 MAN MAN C1 O1 . O3 HO3 . sing 10 ? 3 2 1 MAN BMA C1 O1 . O3 HO3 . sing 11 ? 3 3 2 MAN MAN C1 O1 . O2 HO2 . sing 12 ? 3 4 3 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 501 NAG 2 n C NAG 2 C 2 NAG C 502 NAG 2 n C BMA 3 C 3 BMA C 503 BMA 2 n C MAN 4 C 4 MAN C 504 MAN 2 n C MAN 5 C 5 MAN C 505 MAN 2 n C MAN 6 C 6 MAN C 506 MAN 2 n C MAN 7 C 7 MAN C 507 MAN 2 n C MAN 8 C 8 MAN C 510 MAN 2 n C MAN 9 C 9 MAN C 511 MAN 2 n C MAN 10 C 10 MAN C 508 MAN 3 n D BMA 1 D 1 BMA D 603 BMA 3 n D MAN 2 D 2 MAN D 604 MAN 3 n D MAN 3 D 3 MAN D 605 MAN 3 n D MAN 4 D 4 MAN D 606 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 58 A CYS 58 1_555 A SG CYS 73 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 58 B CYS 58 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale3 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O2 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C O2 MAN . C MAN 5 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C O6 MAN . C MAN 7 1_555 C C1 MAN . C MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C O3 MAN . C MAN 7 1_555 C C1 MAN . C MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 C O2 MAN . C MAN 8 1_555 C C1 MAN . C MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale10 D O3 BMA . D BMA 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 D O2 MAN . D MAN 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O2 MAN . D MAN 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GXZ _atom_sites.fract_transf_matrix[1][1] 0.016257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NHE A 1 301 301 NHE NHE . F 5 MG A 1 102 1 MG MG . G 6 HOH A 1 103 2 HOH HOH . G 6 HOH A 2 104 6 HOH HOH . G 6 HOH A 3 105 7 HOH HOH . G 6 HOH A 4 106 8 HOH HOH . G 6 HOH A 5 107 12 HOH HOH . G 6 HOH A 6 108 13 HOH HOH . G 6 HOH A 7 109 14 HOH HOH . G 6 HOH A 8 110 15 HOH HOH . G 6 HOH A 9 111 16 HOH HOH . G 6 HOH A 10 112 18 HOH HOH . G 6 HOH A 11 113 22 HOH HOH . G 6 HOH A 12 114 24 HOH HOH . G 6 HOH A 13 115 28 HOH HOH . G 6 HOH A 14 116 30 HOH HOH . G 6 HOH A 15 117 32 HOH HOH . G 6 HOH A 16 118 36 HOH HOH . G 6 HOH A 17 119 38 HOH HOH . G 6 HOH A 18 120 41 HOH HOH . G 6 HOH A 19 121 45 HOH HOH . H 6 HOH B 1 102 1 HOH HOH . H 6 HOH B 2 103 3 HOH HOH . H 6 HOH B 3 104 4 HOH HOH . H 6 HOH B 4 105 5 HOH HOH . H 6 HOH B 5 106 9 HOH HOH . H 6 HOH B 6 107 10 HOH HOH . H 6 HOH B 7 108 11 HOH HOH . H 6 HOH B 8 109 17 HOH HOH . H 6 HOH B 9 110 19 HOH HOH . H 6 HOH B 10 111 20 HOH HOH . H 6 HOH B 11 112 21 HOH HOH . H 6 HOH B 12 113 23 HOH HOH . H 6 HOH B 13 114 25 HOH HOH . H 6 HOH B 14 115 26 HOH HOH . H 6 HOH B 15 116 27 HOH HOH . H 6 HOH B 16 117 29 HOH HOH . H 6 HOH B 17 118 31 HOH HOH . H 6 HOH B 18 119 33 HOH HOH . H 6 HOH B 19 120 34 HOH HOH . H 6 HOH B 20 121 37 HOH HOH . H 6 HOH B 21 122 39 HOH HOH . H 6 HOH B 22 123 40 HOH HOH . H 6 HOH B 23 124 43 HOH HOH . H 6 HOH B 24 125 44 HOH HOH . H 6 HOH B 25 126 46 HOH HOH . H 6 HOH B 26 127 47 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 26.269 _atom_site.Cartn_y 35.719 _atom_site.Cartn_z 119.986 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #