data_3GY3
#
_model_server_result.job_id            PO5rC43dqPx67UvVQj10ew 
_model_server_result.datetime_utc      '2024-12-02 03:37:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":4}' 
#
_entry.id    3GY3 
#
_exptl.entry_id    3GY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GY3 
_cell.length_a            53.393 
_cell.length_b            53.393 
_cell.length_c            104.76 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc1 B CA CA . A CA 1 1_555 K O HOH . A HOH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc2 B CA CA . A CA 1 1_555 K O HOH . A HOH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc3 B CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc4 B CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc5 B CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 B CA CA . A CA 1 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3GY3 
_atom_sites.fract_transf_matrix[1][1]    0.018729 
_atom_sites.fract_transf_matrix[1][2]    0.010813 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1 1 CA CA . 
C 3 PNT A 1 246 1 PNT PNT . 
D 4 EDO A 1 247 1 EDO EDO . 
E 4 EDO A 1 2 2 EDO EDO . 
F 4 EDO A 1 3 3 EDO EDO . 
G 4 EDO A 1 4 4 EDO EDO . 
H 4 EDO A 1 5 5 EDO EDO . 
I 4 EDO A 1 6 6 EDO EDO . 
J 4 EDO A 1 7 7 EDO EDO . 
K 5 HOH A 1 8 8 HOH HOH . 
K 5 HOH A 2 9 9 HOH HOH . 
K 5 HOH A 3 10 10 HOH HOH . 
K 5 HOH A 4 11 11 HOH HOH . 
K 5 HOH A 5 12 12 HOH HOH . 
K 5 HOH A 6 13 13 HOH HOH . 
K 5 HOH A 7 14 14 HOH HOH . 
K 5 HOH A 8 15 15 HOH HOH . 
K 5 HOH A 9 35 35 HOH HOH . 
K 5 HOH A 10 36 36 HOH HOH . 
K 5 HOH A 11 68 68 HOH HOH . 
K 5 HOH A 12 126 126 HOH HOH . 
K 5 HOH A 13 131 131 HOH HOH . 
K 5 HOH A 14 208 208 HOH HOH . 
K 5 HOH A 15 218 218 HOH HOH . 
K 5 HOH A 16 248 1 HOH HOH . 
K 5 HOH A 17 249 2 HOH HOH . 
K 5 HOH A 18 250 3 HOH HOH . 
K 5 HOH A 19 251 4 HOH HOH . 
K 5 HOH A 20 252 5 HOH HOH . 
K 5 HOH A 21 253 6 HOH HOH . 
K 5 HOH A 22 254 7 HOH HOH . 
K 5 HOH A 23 255 16 HOH HOH . 
K 5 HOH A 24 256 17 HOH HOH . 
K 5 HOH A 25 257 18 HOH HOH . 
K 5 HOH A 26 258 19 HOH HOH . 
K 5 HOH A 27 259 20 HOH HOH . 
K 5 HOH A 28 260 21 HOH HOH . 
K 5 HOH A 29 261 22 HOH HOH . 
K 5 HOH A 30 262 23 HOH HOH . 
K 5 HOH A 31 263 24 HOH HOH . 
K 5 HOH A 32 264 25 HOH HOH . 
K 5 HOH A 33 265 26 HOH HOH . 
K 5 HOH A 34 266 27 HOH HOH . 
K 5 HOH A 35 267 28 HOH HOH . 
K 5 HOH A 36 268 29 HOH HOH . 
K 5 HOH A 37 269 30 HOH HOH . 
K 5 HOH A 38 270 31 HOH HOH . 
K 5 HOH A 39 271 32 HOH HOH . 
K 5 HOH A 40 272 33 HOH HOH . 
K 5 HOH A 41 273 34 HOH HOH . 
K 5 HOH A 42 274 37 HOH HOH . 
K 5 HOH A 43 275 38 HOH HOH . 
K 5 HOH A 44 276 39 HOH HOH . 
K 5 HOH A 45 277 40 HOH HOH . 
K 5 HOH A 46 278 41 HOH HOH . 
K 5 HOH A 47 279 42 HOH HOH . 
K 5 HOH A 48 280 43 HOH HOH . 
K 5 HOH A 49 281 44 HOH HOH . 
K 5 HOH A 50 282 45 HOH HOH . 
K 5 HOH A 51 283 46 HOH HOH . 
K 5 HOH A 52 284 47 HOH HOH . 
K 5 HOH A 53 285 48 HOH HOH . 
K 5 HOH A 54 286 49 HOH HOH . 
K 5 HOH A 55 287 50 HOH HOH . 
K 5 HOH A 56 288 51 HOH HOH . 
K 5 HOH A 57 289 52 HOH HOH . 
K 5 HOH A 58 290 53 HOH HOH . 
K 5 HOH A 59 291 54 HOH HOH . 
K 5 HOH A 60 292 55 HOH HOH . 
K 5 HOH A 61 293 56 HOH HOH . 
K 5 HOH A 62 294 57 HOH HOH . 
K 5 HOH A 63 295 58 HOH HOH . 
K 5 HOH A 64 296 59 HOH HOH . 
K 5 HOH A 65 297 60 HOH HOH . 
K 5 HOH A 66 298 61 HOH HOH . 
K 5 HOH A 67 299 62 HOH HOH . 
K 5 HOH A 68 300 63 HOH HOH . 
K 5 HOH A 69 301 64 HOH HOH . 
K 5 HOH A 70 302 65 HOH HOH . 
K 5 HOH A 71 303 66 HOH HOH . 
K 5 HOH A 72 304 67 HOH HOH . 
K 5 HOH A 73 305 69 HOH HOH . 
K 5 HOH A 74 306 70 HOH HOH . 
K 5 HOH A 75 307 71 HOH HOH . 
K 5 HOH A 76 308 72 HOH HOH . 
K 5 HOH A 77 309 73 HOH HOH . 
K 5 HOH A 78 310 74 HOH HOH . 
K 5 HOH A 79 311 75 HOH HOH . 
K 5 HOH A 80 312 76 HOH HOH . 
K 5 HOH A 81 313 77 HOH HOH . 
K 5 HOH A 82 314 78 HOH HOH . 
K 5 HOH A 83 315 79 HOH HOH . 
K 5 HOH A 84 316 80 HOH HOH . 
K 5 HOH A 85 317 81 HOH HOH . 
K 5 HOH A 86 318 82 HOH HOH . 
K 5 HOH A 87 319 83 HOH HOH . 
K 5 HOH A 88 320 84 HOH HOH . 
K 5 HOH A 89 321 85 HOH HOH . 
K 5 HOH A 90 322 86 HOH HOH . 
K 5 HOH A 91 323 87 HOH HOH . 
K 5 HOH A 92 324 88 HOH HOH . 
K 5 HOH A 93 325 89 HOH HOH . 
K 5 HOH A 94 326 90 HOH HOH . 
K 5 HOH A 95 327 91 HOH HOH . 
K 5 HOH A 96 328 92 HOH HOH . 
K 5 HOH A 97 329 93 HOH HOH . 
K 5 HOH A 98 330 94 HOH HOH . 
K 5 HOH A 99 331 95 HOH HOH . 
K 5 HOH A 100 332 96 HOH HOH . 
K 5 HOH A 101 333 97 HOH HOH . 
K 5 HOH A 102 334 98 HOH HOH . 
K 5 HOH A 103 335 99 HOH HOH . 
K 5 HOH A 104 336 100 HOH HOH . 
K 5 HOH A 105 337 101 HOH HOH . 
K 5 HOH A 106 338 103 HOH HOH . 
K 5 HOH A 107 339 104 HOH HOH . 
K 5 HOH A 108 340 105 HOH HOH . 
K 5 HOH A 109 341 107 HOH HOH . 
K 5 HOH A 110 342 108 HOH HOH . 
K 5 HOH A 111 343 109 HOH HOH . 
K 5 HOH A 112 344 110 HOH HOH . 
K 5 HOH A 113 345 111 HOH HOH . 
K 5 HOH A 114 346 112 HOH HOH . 
K 5 HOH A 115 347 113 HOH HOH . 
K 5 HOH A 116 348 114 HOH HOH . 
K 5 HOH A 117 349 115 HOH HOH . 
K 5 HOH A 118 350 116 HOH HOH . 
K 5 HOH A 119 351 117 HOH HOH . 
K 5 HOH A 120 352 118 HOH HOH . 
K 5 HOH A 121 353 119 HOH HOH . 
K 5 HOH A 122 354 120 HOH HOH . 
K 5 HOH A 123 355 121 HOH HOH . 
K 5 HOH A 124 356 123 HOH HOH . 
K 5 HOH A 125 357 124 HOH HOH . 
K 5 HOH A 126 358 125 HOH HOH . 
K 5 HOH A 127 359 127 HOH HOH . 
K 5 HOH A 128 360 128 HOH HOH . 
K 5 HOH A 129 361 129 HOH HOH . 
K 5 HOH A 130 362 130 HOH HOH . 
K 5 HOH A 131 363 132 HOH HOH . 
K 5 HOH A 132 364 133 HOH HOH . 
K 5 HOH A 133 365 134 HOH HOH . 
K 5 HOH A 134 366 135 HOH HOH . 
K 5 HOH A 135 367 136 HOH HOH . 
K 5 HOH A 136 368 137 HOH HOH . 
K 5 HOH A 137 369 138 HOH HOH . 
K 5 HOH A 138 370 139 HOH HOH . 
K 5 HOH A 139 371 140 HOH HOH . 
K 5 HOH A 140 372 141 HOH HOH . 
K 5 HOH A 141 373 142 HOH HOH . 
K 5 HOH A 142 374 144 HOH HOH . 
K 5 HOH A 143 375 145 HOH HOH . 
K 5 HOH A 144 376 146 HOH HOH . 
K 5 HOH A 145 377 147 HOH HOH . 
K 5 HOH A 146 378 148 HOH HOH . 
K 5 HOH A 147 379 149 HOH HOH . 
K 5 HOH A 148 380 150 HOH HOH . 
K 5 HOH A 149 381 151 HOH HOH . 
K 5 HOH A 150 382 152 HOH HOH . 
K 5 HOH A 151 383 153 HOH HOH . 
K 5 HOH A 152 384 154 HOH HOH . 
K 5 HOH A 153 385 155 HOH HOH . 
K 5 HOH A 154 386 156 HOH HOH . 
K 5 HOH A 155 387 157 HOH HOH . 
K 5 HOH A 156 388 158 HOH HOH . 
K 5 HOH A 157 389 159 HOH HOH . 
K 5 HOH A 158 390 160 HOH HOH . 
K 5 HOH A 159 391 161 HOH HOH . 
K 5 HOH A 160 392 162 HOH HOH . 
K 5 HOH A 161 393 163 HOH HOH . 
K 5 HOH A 162 394 164 HOH HOH . 
K 5 HOH A 163 395 166 HOH HOH . 
K 5 HOH A 164 396 167 HOH HOH . 
K 5 HOH A 165 397 169 HOH HOH . 
K 5 HOH A 166 398 170 HOH HOH . 
K 5 HOH A 167 399 172 HOH HOH . 
K 5 HOH A 168 400 173 HOH HOH . 
K 5 HOH A 169 401 174 HOH HOH . 
K 5 HOH A 170 402 175 HOH HOH . 
K 5 HOH A 171 403 176 HOH HOH . 
K 5 HOH A 172 404 177 HOH HOH . 
K 5 HOH A 173 405 178 HOH HOH . 
K 5 HOH A 174 406 179 HOH HOH . 
K 5 HOH A 175 407 181 HOH HOH . 
K 5 HOH A 176 408 182 HOH HOH . 
K 5 HOH A 177 409 183 HOH HOH . 
K 5 HOH A 178 410 184 HOH HOH . 
K 5 HOH A 179 411 185 HOH HOH . 
K 5 HOH A 180 412 186 HOH HOH . 
K 5 HOH A 181 413 188 HOH HOH . 
K 5 HOH A 182 414 189 HOH HOH . 
K 5 HOH A 183 415 190 HOH HOH . 
K 5 HOH A 184 416 191 HOH HOH . 
K 5 HOH A 185 417 192 HOH HOH . 
K 5 HOH A 186 418 193 HOH HOH . 
K 5 HOH A 187 419 194 HOH HOH . 
K 5 HOH A 188 420 195 HOH HOH . 
K 5 HOH A 189 421 196 HOH HOH . 
K 5 HOH A 190 422 197 HOH HOH . 
K 5 HOH A 191 423 198 HOH HOH . 
K 5 HOH A 192 424 199 HOH HOH . 
K 5 HOH A 193 425 200 HOH HOH . 
K 5 HOH A 194 426 201 HOH HOH . 
K 5 HOH A 195 427 209 HOH HOH . 
K 5 HOH A 196 428 210 HOH HOH . 
K 5 HOH A 197 429 211 HOH HOH . 
K 5 HOH A 198 430 214 HOH HOH . 
K 5 HOH A 199 431 216 HOH HOH . 
K 5 HOH A 200 432 217 HOH HOH . 
K 5 HOH A 201 433 219 HOH HOH . 
K 5 HOH A 202 434 220 HOH HOH . 
K 5 HOH A 203 435 221 HOH HOH . 
K 5 HOH A 204 436 222 HOH HOH . 
K 5 HOH A 205 437 223 HOH HOH . 
K 5 HOH A 206 438 224 HOH HOH . 
K 5 HOH A 207 439 225 HOH HOH . 
K 5 HOH A 208 440 226 HOH HOH . 
K 5 HOH A 209 441 227 HOH HOH . 
K 5 HOH A 210 442 228 HOH HOH . 
K 5 HOH A 211 443 229 HOH HOH . 
K 5 HOH A 212 444 230 HOH HOH . 
K 5 HOH A 213 445 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 -19.821 7.081 55.813 1 37.7 ? C1 EDO 4 A 1 
HETATM 2 O O1 EDO . . . G 4 -20.632 8.257 55.762 1 37.5 ? O1 EDO 4 A 1 
HETATM 3 C C2 EDO . . . G 4 -19.346 6.829 57.225 1 38.66 ? C2 EDO 4 A 1 
HETATM 4 O O2 EDO . . . G 4 -19.305 5.421 57.415 1 41.09 ? O2 EDO 4 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#