data_3GY8 # _model_server_result.job_id zG9Uym0hafMbtbIxcmwMTw _model_server_result.datetime_utc '2024-11-22 02:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5}' # _entry.id 3GY8 # _exptl.entry_id 3GY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GY8 _cell.length_a 53.563 _cell.length_b 53.563 _cell.length_c 104.365 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc1 H O HOH . A HOH 6 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 B CA CA . A CA 247 1_555 H O HOH . A HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 3GY8 _atom_sites.fract_transf_matrix[1][1] 0.01867 _atom_sites.fract_transf_matrix[1][2] 0.010779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 BRN A 1 1 1 BRN BRN . D 4 EDO A 1 246 1 EDO EDO . E 4 EDO A 1 2 2 EDO EDO . F 4 EDO A 1 4 4 EDO EDO . G 4 EDO A 1 5 5 EDO EDO . H 5 HOH A 1 3 3 HOH HOH . H 5 HOH A 2 6 6 HOH HOH . H 5 HOH A 3 7 7 HOH HOH . H 5 HOH A 4 8 8 HOH HOH . H 5 HOH A 5 9 9 HOH HOH . H 5 HOH A 6 10 10 HOH HOH . H 5 HOH A 7 11 11 HOH HOH . H 5 HOH A 8 12 12 HOH HOH . H 5 HOH A 9 13 13 HOH HOH . H 5 HOH A 10 14 14 HOH HOH . H 5 HOH A 11 15 15 HOH HOH . H 5 HOH A 12 35 35 HOH HOH . H 5 HOH A 13 36 36 HOH HOH . H 5 HOH A 14 68 68 HOH HOH . H 5 HOH A 15 126 126 HOH HOH . H 5 HOH A 16 131 131 HOH HOH . H 5 HOH A 17 205 205 HOH HOH . H 5 HOH A 18 206 206 HOH HOH . H 5 HOH A 19 207 207 HOH HOH . H 5 HOH A 20 208 208 HOH HOH . H 5 HOH A 21 218 218 HOH HOH . H 5 HOH A 22 248 1 HOH HOH . H 5 HOH A 23 249 2 HOH HOH . H 5 HOH A 24 250 4 HOH HOH . H 5 HOH A 25 251 5 HOH HOH . H 5 HOH A 26 252 16 HOH HOH . H 5 HOH A 27 253 17 HOH HOH . H 5 HOH A 28 254 18 HOH HOH . H 5 HOH A 29 255 19 HOH HOH . H 5 HOH A 30 256 20 HOH HOH . H 5 HOH A 31 257 21 HOH HOH . H 5 HOH A 32 258 22 HOH HOH . H 5 HOH A 33 259 23 HOH HOH . H 5 HOH A 34 260 24 HOH HOH . H 5 HOH A 35 261 25 HOH HOH . H 5 HOH A 36 262 26 HOH HOH . H 5 HOH A 37 263 27 HOH HOH . H 5 HOH A 38 264 28 HOH HOH . H 5 HOH A 39 265 29 HOH HOH . H 5 HOH A 40 266 30 HOH HOH . H 5 HOH A 41 267 31 HOH HOH . H 5 HOH A 42 268 32 HOH HOH . H 5 HOH A 43 269 33 HOH HOH . H 5 HOH A 44 270 34 HOH HOH . H 5 HOH A 45 271 37 HOH HOH . H 5 HOH A 46 272 38 HOH HOH . H 5 HOH A 47 273 39 HOH HOH . H 5 HOH A 48 274 40 HOH HOH . H 5 HOH A 49 275 41 HOH HOH . H 5 HOH A 50 276 42 HOH HOH . H 5 HOH A 51 277 43 HOH HOH . H 5 HOH A 52 278 44 HOH HOH . H 5 HOH A 53 279 45 HOH HOH . H 5 HOH A 54 280 46 HOH HOH . H 5 HOH A 55 281 47 HOH HOH . H 5 HOH A 56 282 48 HOH HOH . H 5 HOH A 57 283 49 HOH HOH . H 5 HOH A 58 284 50 HOH HOH . H 5 HOH A 59 285 51 HOH HOH . H 5 HOH A 60 286 52 HOH HOH . H 5 HOH A 61 287 54 HOH HOH . H 5 HOH A 62 288 55 HOH HOH . H 5 HOH A 63 289 56 HOH HOH . H 5 HOH A 64 290 57 HOH HOH . H 5 HOH A 65 291 59 HOH HOH . H 5 HOH A 66 292 60 HOH HOH . H 5 HOH A 67 293 61 HOH HOH . H 5 HOH A 68 294 62 HOH HOH . H 5 HOH A 69 295 63 HOH HOH . H 5 HOH A 70 296 64 HOH HOH . H 5 HOH A 71 297 65 HOH HOH . H 5 HOH A 72 298 66 HOH HOH . H 5 HOH A 73 299 67 HOH HOH . H 5 HOH A 74 300 69 HOH HOH . H 5 HOH A 75 301 70 HOH HOH . H 5 HOH A 76 302 71 HOH HOH . H 5 HOH A 77 303 72 HOH HOH . H 5 HOH A 78 304 73 HOH HOH . H 5 HOH A 79 305 74 HOH HOH . H 5 HOH A 80 306 75 HOH HOH . H 5 HOH A 81 307 76 HOH HOH . H 5 HOH A 82 308 78 HOH HOH . H 5 HOH A 83 309 79 HOH HOH . H 5 HOH A 84 310 80 HOH HOH . H 5 HOH A 85 311 82 HOH HOH . H 5 HOH A 86 312 83 HOH HOH . H 5 HOH A 87 313 85 HOH HOH . H 5 HOH A 88 314 86 HOH HOH . H 5 HOH A 89 315 87 HOH HOH . H 5 HOH A 90 316 88 HOH HOH . H 5 HOH A 91 317 89 HOH HOH . H 5 HOH A 92 318 90 HOH HOH . H 5 HOH A 93 319 91 HOH HOH . H 5 HOH A 94 320 92 HOH HOH . H 5 HOH A 95 321 93 HOH HOH . H 5 HOH A 96 322 94 HOH HOH . H 5 HOH A 97 323 95 HOH HOH . H 5 HOH A 98 324 96 HOH HOH . H 5 HOH A 99 325 97 HOH HOH . H 5 HOH A 100 326 98 HOH HOH . H 5 HOH A 101 327 99 HOH HOH . H 5 HOH A 102 328 100 HOH HOH . H 5 HOH A 103 329 101 HOH HOH . H 5 HOH A 104 330 102 HOH HOH . H 5 HOH A 105 331 103 HOH HOH . H 5 HOH A 106 332 104 HOH HOH . H 5 HOH A 107 333 105 HOH HOH . H 5 HOH A 108 334 106 HOH HOH . H 5 HOH A 109 335 107 HOH HOH . H 5 HOH A 110 336 108 HOH HOH . H 5 HOH A 111 337 109 HOH HOH . H 5 HOH A 112 338 110 HOH HOH . H 5 HOH A 113 339 111 HOH HOH . H 5 HOH A 114 340 112 HOH HOH . H 5 HOH A 115 341 113 HOH HOH . H 5 HOH A 116 342 114 HOH HOH . H 5 HOH A 117 343 115 HOH HOH . H 5 HOH A 118 344 116 HOH HOH . H 5 HOH A 119 345 117 HOH HOH . H 5 HOH A 120 346 118 HOH HOH . H 5 HOH A 121 347 119 HOH HOH . H 5 HOH A 122 348 120 HOH HOH . H 5 HOH A 123 349 121 HOH HOH . H 5 HOH A 124 350 122 HOH HOH . H 5 HOH A 125 351 123 HOH HOH . H 5 HOH A 126 352 124 HOH HOH . H 5 HOH A 127 353 125 HOH HOH . H 5 HOH A 128 354 127 HOH HOH . H 5 HOH A 129 355 128 HOH HOH . H 5 HOH A 130 356 129 HOH HOH . H 5 HOH A 131 357 130 HOH HOH . H 5 HOH A 132 358 132 HOH HOH . H 5 HOH A 133 359 133 HOH HOH . H 5 HOH A 134 360 134 HOH HOH . H 5 HOH A 135 361 135 HOH HOH . H 5 HOH A 136 362 136 HOH HOH . H 5 HOH A 137 363 137 HOH HOH . H 5 HOH A 138 364 138 HOH HOH . H 5 HOH A 139 365 139 HOH HOH . H 5 HOH A 140 366 140 HOH HOH . H 5 HOH A 141 367 141 HOH HOH . H 5 HOH A 142 368 142 HOH HOH . H 5 HOH A 143 369 143 HOH HOH . H 5 HOH A 144 370 145 HOH HOH . H 5 HOH A 145 371 146 HOH HOH . H 5 HOH A 146 372 147 HOH HOH . H 5 HOH A 147 373 148 HOH HOH . H 5 HOH A 148 374 149 HOH HOH . H 5 HOH A 149 375 150 HOH HOH . H 5 HOH A 150 376 152 HOH HOH . H 5 HOH A 151 377 153 HOH HOH . H 5 HOH A 152 378 154 HOH HOH . H 5 HOH A 153 379 155 HOH HOH . H 5 HOH A 154 380 157 HOH HOH . H 5 HOH A 155 381 158 HOH HOH . H 5 HOH A 156 382 159 HOH HOH . H 5 HOH A 157 383 161 HOH HOH . H 5 HOH A 158 384 162 HOH HOH . H 5 HOH A 159 385 163 HOH HOH . H 5 HOH A 160 386 164 HOH HOH . H 5 HOH A 161 387 165 HOH HOH . H 5 HOH A 162 388 166 HOH HOH . H 5 HOH A 163 389 167 HOH HOH . H 5 HOH A 164 390 168 HOH HOH . H 5 HOH A 165 391 169 HOH HOH . H 5 HOH A 166 392 171 HOH HOH . H 5 HOH A 167 393 173 HOH HOH . H 5 HOH A 168 394 174 HOH HOH . H 5 HOH A 169 395 175 HOH HOH . H 5 HOH A 170 396 176 HOH HOH . H 5 HOH A 171 397 177 HOH HOH . H 5 HOH A 172 398 178 HOH HOH . H 5 HOH A 173 399 179 HOH HOH . H 5 HOH A 174 400 180 HOH HOH . H 5 HOH A 175 401 181 HOH HOH . H 5 HOH A 176 402 182 HOH HOH . H 5 HOH A 177 403 183 HOH HOH . H 5 HOH A 178 404 184 HOH HOH . H 5 HOH A 179 405 185 HOH HOH . H 5 HOH A 180 406 186 HOH HOH . H 5 HOH A 181 407 187 HOH HOH . H 5 HOH A 182 408 188 HOH HOH . H 5 HOH A 183 409 189 HOH HOH . H 5 HOH A 184 410 190 HOH HOH . H 5 HOH A 185 411 192 HOH HOH . H 5 HOH A 186 412 194 HOH HOH . H 5 HOH A 187 413 195 HOH HOH . H 5 HOH A 188 414 196 HOH HOH . H 5 HOH A 189 415 197 HOH HOH . H 5 HOH A 190 416 198 HOH HOH . H 5 HOH A 191 417 199 HOH HOH . H 5 HOH A 192 418 200 HOH HOH . H 5 HOH A 193 419 201 HOH HOH . H 5 HOH A 194 420 202 HOH HOH . H 5 HOH A 195 421 203 HOH HOH . H 5 HOH A 196 422 204 HOH HOH . H 5 HOH A 197 423 209 HOH HOH . H 5 HOH A 198 424 210 HOH HOH . H 5 HOH A 199 425 211 HOH HOH . H 5 HOH A 200 426 212 HOH HOH . H 5 HOH A 201 427 213 HOH HOH . H 5 HOH A 202 428 214 HOH HOH . H 5 HOH A 203 429 215 HOH HOH . H 5 HOH A 204 430 216 HOH HOH . H 5 HOH A 205 431 217 HOH HOH . H 5 HOH A 206 432 219 HOH HOH . H 5 HOH A 207 433 220 HOH HOH . H 5 HOH A 208 434 222 HOH HOH . H 5 HOH A 209 435 223 HOH HOH . H 5 HOH A 210 436 224 HOH HOH . H 5 HOH A 211 437 225 HOH HOH . H 5 HOH A 212 438 226 HOH HOH . H 5 HOH A 213 439 228 HOH HOH . H 5 HOH A 214 440 229 HOH HOH . H 5 HOH A 215 441 231 HOH HOH . H 5 HOH A 216 442 232 HOH HOH . H 5 HOH A 217 443 234 HOH HOH . H 5 HOH A 218 444 235 HOH HOH . H 5 HOH A 219 445 236 HOH HOH . H 5 HOH A 220 446 237 HOH HOH . H 5 HOH A 221 447 238 HOH HOH . H 5 HOH A 222 448 239 HOH HOH . H 5 HOH A 223 449 240 HOH HOH . H 5 HOH A 224 450 241 HOH HOH . H 5 HOH A 225 451 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 35.721 -12.03 15.974 1 25.75 ? C1 EDO 5 A 1 HETATM 2 O O1 EDO . . . G 4 34.928 -12.519 17.062 1 19.56 ? O1 EDO 5 A 1 HETATM 3 C C2 EDO . . . G 4 34.846 -11.073 15.18 1 26.79 ? C2 EDO 5 A 1 HETATM 4 O O2 EDO . . . G 4 34.397 -11.809 14.052 1 33.07 ? O2 EDO 5 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #