data_3GYA # _model_server_result.job_id 0jJvV6VlBIZnc2tl4C0q5w _model_server_result.datetime_utc '2025-08-31 15:39:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":154}' # _entry.id 3GYA # _exptl.entry_id 3GYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GYA _cell.length_a 55.793 _cell.length_b 66.249 _cell.length_c 87.769 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 55.793 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N ASP 3 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C ARG 34 A ARG 33 1_555 A N MSE 35 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 35 A MSE 34 1_555 A N LEU 36 A LEU 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ALA 50 A ALA 49 1_555 A N MSE 51 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 51 A MSE 50 1_555 A N PHE 52 A PHE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C TYR 67 A TYR 66 1_555 A N MSE 68 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C MSE 68 A MSE 67 1_555 A N LYS 69 A LYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C ILE 101 A ILE 100 1_555 A N MSE 102 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C MSE 102 A MSE 101 1_555 A N SER 103 A SER 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 B S1P COA . A COA 150 1_555 B S1P COA . A COA 150 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 169 n n C1 C2 EDO sing 170 n n C1 H11 EDO sing 171 n n C1 H12 EDO sing 172 n n O1 HO1 EDO sing 173 n n C2 O2 EDO sing 174 n n C2 H21 EDO sing 175 n n C2 H22 EDO sing 176 n n O2 HO2 EDO sing 177 n n # _atom_sites.entry_id 3GYA _atom_sites.fract_transf_matrix[1][1] 0.017923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 150 1 COA COA . C 3 SO4 A 1 151 2 SO4 SO4 . D 3 SO4 A 1 152 3 SO4 SO4 . E 3 SO4 A 1 153 4 SO4 SO4 . F 4 EDO A 1 154 5 EDO EDO . G 5 HOH A 1 155 6 HOH HOH . G 5 HOH A 2 156 7 HOH HOH . G 5 HOH A 3 157 8 HOH HOH . G 5 HOH A 4 158 9 HOH HOH . G 5 HOH A 5 159 10 HOH HOH . G 5 HOH A 6 160 11 HOH HOH . G 5 HOH A 7 161 12 HOH HOH . G 5 HOH A 8 162 13 HOH HOH . G 5 HOH A 9 163 14 HOH HOH . G 5 HOH A 10 164 15 HOH HOH . G 5 HOH A 11 165 16 HOH HOH . G 5 HOH A 12 166 17 HOH HOH . G 5 HOH A 13 167 18 HOH HOH . G 5 HOH A 14 168 19 HOH HOH . G 5 HOH A 15 169 20 HOH HOH . G 5 HOH A 16 170 21 HOH HOH . G 5 HOH A 17 171 22 HOH HOH . G 5 HOH A 18 172 23 HOH HOH . G 5 HOH A 19 173 24 HOH HOH . G 5 HOH A 20 174 25 HOH HOH . G 5 HOH A 21 175 26 HOH HOH . G 5 HOH A 22 176 27 HOH HOH . G 5 HOH A 23 177 28 HOH HOH . G 5 HOH A 24 178 29 HOH HOH . G 5 HOH A 25 179 30 HOH HOH . G 5 HOH A 26 180 31 HOH HOH . G 5 HOH A 27 181 32 HOH HOH . G 5 HOH A 28 182 33 HOH HOH . G 5 HOH A 29 183 34 HOH HOH . G 5 HOH A 30 184 35 HOH HOH . G 5 HOH A 31 185 36 HOH HOH . G 5 HOH A 32 186 37 HOH HOH . G 5 HOH A 33 187 38 HOH HOH . G 5 HOH A 34 188 39 HOH HOH . G 5 HOH A 35 189 40 HOH HOH . G 5 HOH A 36 190 41 HOH HOH . G 5 HOH A 37 191 42 HOH HOH . G 5 HOH A 38 192 43 HOH HOH . G 5 HOH A 39 193 44 HOH HOH . G 5 HOH A 40 194 45 HOH HOH . G 5 HOH A 41 195 46 HOH HOH . G 5 HOH A 42 196 47 HOH HOH . G 5 HOH A 43 197 48 HOH HOH . G 5 HOH A 44 198 49 HOH HOH . G 5 HOH A 45 199 50 HOH HOH . G 5 HOH A 46 200 51 HOH HOH . G 5 HOH A 47 201 52 HOH HOH . G 5 HOH A 48 202 53 HOH HOH . G 5 HOH A 49 203 54 HOH HOH . G 5 HOH A 50 204 55 HOH HOH . G 5 HOH A 51 205 56 HOH HOH . G 5 HOH A 52 206 57 HOH HOH . G 5 HOH A 53 207 58 HOH HOH . G 5 HOH A 54 208 59 HOH HOH . G 5 HOH A 55 209 60 HOH HOH . G 5 HOH A 56 210 61 HOH HOH . G 5 HOH A 57 211 62 HOH HOH . G 5 HOH A 58 212 63 HOH HOH . G 5 HOH A 59 213 64 HOH HOH . G 5 HOH A 60 214 65 HOH HOH . G 5 HOH A 61 215 66 HOH HOH . G 5 HOH A 62 216 67 HOH HOH . G 5 HOH A 63 217 68 HOH HOH . G 5 HOH A 64 218 69 HOH HOH . G 5 HOH A 65 219 70 HOH HOH . G 5 HOH A 66 220 71 HOH HOH . G 5 HOH A 67 221 72 HOH HOH . G 5 HOH A 68 222 73 HOH HOH . G 5 HOH A 69 223 74 HOH HOH . G 5 HOH A 70 224 75 HOH HOH . G 5 HOH A 71 225 76 HOH HOH . G 5 HOH A 72 226 77 HOH HOH . G 5 HOH A 73 227 78 HOH HOH . G 5 HOH A 74 228 79 HOH HOH . G 5 HOH A 75 229 80 HOH HOH . G 5 HOH A 76 230 81 HOH HOH . G 5 HOH A 77 231 82 HOH HOH . G 5 HOH A 78 232 83 HOH HOH . G 5 HOH A 79 233 84 HOH HOH . G 5 HOH A 80 234 85 HOH HOH . G 5 HOH A 81 235 86 HOH HOH . G 5 HOH A 82 236 87 HOH HOH . G 5 HOH A 83 237 88 HOH HOH . G 5 HOH A 84 238 89 HOH HOH . G 5 HOH A 85 239 90 HOH HOH . G 5 HOH A 86 240 91 HOH HOH . G 5 HOH A 87 241 92 HOH HOH . G 5 HOH A 88 242 93 HOH HOH . G 5 HOH A 89 243 94 HOH HOH . G 5 HOH A 90 244 95 HOH HOH . G 5 HOH A 91 245 96 HOH HOH . G 5 HOH A 92 246 97 HOH HOH . G 5 HOH A 93 247 98 HOH HOH . G 5 HOH A 94 248 99 HOH HOH . G 5 HOH A 95 249 100 HOH HOH . G 5 HOH A 96 250 101 HOH HOH . G 5 HOH A 97 251 102 HOH HOH . G 5 HOH A 98 252 103 HOH HOH . G 5 HOH A 99 253 104 HOH HOH . G 5 HOH A 100 254 105 HOH HOH . G 5 HOH A 101 255 106 HOH HOH . G 5 HOH A 102 256 107 HOH HOH . G 5 HOH A 103 257 108 HOH HOH . G 5 HOH A 104 258 109 HOH HOH . G 5 HOH A 105 259 110 HOH HOH . G 5 HOH A 106 260 111 HOH HOH . G 5 HOH A 107 261 112 HOH HOH . G 5 HOH A 108 262 113 HOH HOH . G 5 HOH A 109 263 114 HOH HOH . G 5 HOH A 110 264 115 HOH HOH . G 5 HOH A 111 265 116 HOH HOH . G 5 HOH A 112 266 117 HOH HOH . G 5 HOH A 113 267 118 HOH HOH . G 5 HOH A 114 268 119 HOH HOH . G 5 HOH A 115 269 120 HOH HOH . G 5 HOH A 116 270 121 HOH HOH . G 5 HOH A 117 271 122 HOH HOH . G 5 HOH A 118 272 123 HOH HOH . G 5 HOH A 119 273 124 HOH HOH . G 5 HOH A 120 274 125 HOH HOH . G 5 HOH A 121 275 126 HOH HOH . G 5 HOH A 122 276 127 HOH HOH . G 5 HOH A 123 277 128 HOH HOH . G 5 HOH A 124 278 129 HOH HOH . G 5 HOH A 125 279 130 HOH HOH . G 5 HOH A 126 280 131 HOH HOH . G 5 HOH A 127 281 132 HOH HOH . G 5 HOH A 128 282 133 HOH HOH . G 5 HOH A 129 283 134 HOH HOH . G 5 HOH A 130 284 135 HOH HOH . G 5 HOH A 131 285 136 HOH HOH . G 5 HOH A 132 286 137 HOH HOH . G 5 HOH A 133 287 138 HOH HOH . G 5 HOH A 134 288 139 HOH HOH . G 5 HOH A 135 289 140 HOH HOH . G 5 HOH A 136 290 141 HOH HOH . G 5 HOH A 137 291 142 HOH HOH . G 5 HOH A 138 292 143 HOH HOH . G 5 HOH A 139 293 144 HOH HOH . G 5 HOH A 140 294 145 HOH HOH . G 5 HOH A 141 295 146 HOH HOH . G 5 HOH A 142 296 147 HOH HOH . G 5 HOH A 143 297 148 HOH HOH . G 5 HOH A 144 298 149 HOH HOH . G 5 HOH A 145 299 150 HOH HOH . G 5 HOH A 146 300 151 HOH HOH . G 5 HOH A 147 301 152 HOH HOH . G 5 HOH A 148 302 153 HOH HOH . G 5 HOH A 149 303 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 21.872 22.096 11.392 1 19.81 ? C1 EDO 154 A 1 HETATM 2 O O1 EDO . . . F 4 23.045 21.349 11.094 1 23.24 ? O1 EDO 154 A 1 HETATM 3 C C2 EDO . . . F 4 21.406 22.887 10.168 1 31.07 ? C2 EDO 154 A 1 HETATM 4 O O2 EDO . . . F 4 21.604 22.175 8.938 1 31.81 ? O2 EDO 154 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #