data_3GYF # _model_server_result.job_id w1quQhk1u8-zjQlT6-PU5g _model_server_result.datetime_utc '2024-11-29 11:53:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 3GYF # _exptl.entry_id 3GYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1Z)-2-(2-methoxyphenyl)prop-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GYF _cell.length_a 39.908 _cell.length_b 57.481 _cell.length_c 74.975 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N4 O2' _chem_comp.formula_weight 296.324 _chem_comp.id 51P _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1Z)-2-(2-methoxyphenyl)prop-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag "C'6" "C'1" 51P doub 1 n y "C'1" "C'2" 51P sing 2 n y "C'1" C11 51P sing 3 n n "C'3" "C'2" 51P doub 4 n y "C'2" O13 51P sing 5 n n "C'4" "C'3" 51P sing 6 n y "C'3" "H'3" 51P sing 7 n n "C'5" "C'4" 51P doub 8 n y "C'4" "H'4" 51P sing 9 n n "C'5" "C'6" 51P sing 10 n y "C'5" "H'5" 51P sing 11 n n "C'6" "H'6" 51P sing 12 n n C8' N1' 51P doub 13 n y N1' C2' 51P sing 14 n y C10 C11 51P sing 15 n n C10 H10 51P sing 16 n n C10 H10A 51P sing 17 n n C10 H10B 51P sing 18 z n C11 C9' 51P doub 19 n n C13 O13 51P sing 20 n n C13 H13 51P sing 21 n n C13 H13A 51P sing 22 n n C13 H13B 51P sing 23 n n N3' C2' 51P doub 24 n y C2' N2' 51P sing 25 n n N2' HN2' 51P sing 26 n n N2' HN2A 51P sing 27 n n C4' N3' 51P sing 28 n y N4' C4' 51P sing 29 n n C5' C4' 51P doub 30 n y N4' HN4' 51P sing 31 n n N4' HN4A 51P sing 32 n n C6' C5' 51P sing 33 n y C5' C8' 51P sing 34 n y C9' C6' 51P sing 35 n n C6' C7' 51P doub 36 n y C7' O8' 51P sing 37 n y C7' H7' 51P sing 38 n n O8' C8' 51P sing 39 n y C9' H9' 51P sing 40 n n # _atom_sites.entry_id 3GYF _atom_sites.fract_transf_matrix[1][1] 0.025058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 51P A 1 187 88 51P D09 . C 3 NDP A 1 188 187 NDP NDP . D 4 SO4 A 1 189 1 SO4 SO4 . E 4 SO4 A 1 190 2 SO4 SO4 . F 4 SO4 A 1 191 3 SO4 SO4 . G 5 HOH A 1 192 1 HOH HOH . G 5 HOH A 2 193 2 HOH HOH . G 5 HOH A 3 194 3 HOH HOH . G 5 HOH A 4 195 4 HOH HOH . G 5 HOH A 5 196 5 HOH HOH . G 5 HOH A 6 197 6 HOH HOH . G 5 HOH A 7 198 7 HOH HOH . G 5 HOH A 8 199 8 HOH HOH . G 5 HOH A 9 200 9 HOH HOH . G 5 HOH A 10 201 10 HOH HOH . G 5 HOH A 11 202 11 HOH HOH . G 5 HOH A 12 203 12 HOH HOH . G 5 HOH A 13 204 13 HOH HOH . G 5 HOH A 14 205 15 HOH HOH . G 5 HOH A 15 206 16 HOH HOH . G 5 HOH A 16 207 17 HOH HOH . G 5 HOH A 17 208 18 HOH HOH . G 5 HOH A 18 209 19 HOH HOH . G 5 HOH A 19 210 20 HOH HOH . G 5 HOH A 20 211 21 HOH HOH . G 5 HOH A 21 212 22 HOH HOH . G 5 HOH A 22 213 23 HOH HOH . G 5 HOH A 23 214 24 HOH HOH . G 5 HOH A 24 215 26 HOH HOH . G 5 HOH A 25 216 27 HOH HOH . G 5 HOH A 26 217 28 HOH HOH . G 5 HOH A 27 218 29 HOH HOH . G 5 HOH A 28 219 30 HOH HOH . G 5 HOH A 29 220 31 HOH HOH . G 5 HOH A 30 221 32 HOH HOH . G 5 HOH A 31 222 33 HOH HOH . G 5 HOH A 32 223 34 HOH HOH . G 5 HOH A 33 224 35 HOH HOH . G 5 HOH A 34 225 36 HOH HOH . G 5 HOH A 35 226 37 HOH HOH . G 5 HOH A 36 227 38 HOH HOH . G 5 HOH A 37 228 39 HOH HOH . G 5 HOH A 38 229 41 HOH HOH . G 5 HOH A 39 230 42 HOH HOH . G 5 HOH A 40 231 43 HOH HOH . G 5 HOH A 41 232 44 HOH HOH . G 5 HOH A 42 233 45 HOH HOH . G 5 HOH A 43 234 46 HOH HOH . G 5 HOH A 44 235 47 HOH HOH . G 5 HOH A 45 236 48 HOH HOH . G 5 HOH A 46 237 49 HOH HOH . G 5 HOH A 47 238 50 HOH HOH . G 5 HOH A 48 239 51 HOH HOH . G 5 HOH A 49 240 52 HOH HOH . G 5 HOH A 50 241 53 HOH HOH . G 5 HOH A 51 242 54 HOH HOH . G 5 HOH A 52 243 56 HOH HOH . G 5 HOH A 53 244 57 HOH HOH . G 5 HOH A 54 245 58 HOH HOH . G 5 HOH A 55 246 59 HOH HOH . G 5 HOH A 56 247 60 HOH HOH . G 5 HOH A 57 248 61 HOH HOH . G 5 HOH A 58 249 62 HOH HOH . G 5 HOH A 59 250 64 HOH HOH . G 5 HOH A 60 251 66 HOH HOH . G 5 HOH A 61 252 68 HOH HOH . G 5 HOH A 62 253 69 HOH HOH . G 5 HOH A 63 254 70 HOH HOH . G 5 HOH A 64 255 71 HOH HOH . G 5 HOH A 65 256 72 HOH HOH . G 5 HOH A 66 257 74 HOH HOH . G 5 HOH A 67 258 75 HOH HOH . G 5 HOH A 68 259 76 HOH HOH . G 5 HOH A 69 260 77 HOH HOH . G 5 HOH A 70 261 78 HOH HOH . G 5 HOH A 71 262 79 HOH HOH . G 5 HOH A 72 263 80 HOH HOH . G 5 HOH A 73 264 81 HOH HOH . G 5 HOH A 74 265 82 HOH HOH . G 5 HOH A 75 266 83 HOH HOH . G 5 HOH A 76 267 84 HOH HOH . G 5 HOH A 77 268 85 HOH HOH . G 5 HOH A 78 269 86 HOH HOH . G 5 HOH A 79 270 87 HOH HOH . G 5 HOH A 80 271 88 HOH HOH . G 5 HOH A 81 272 89 HOH HOH . G 5 HOH A 82 273 90 HOH HOH . G 5 HOH A 83 274 94 HOH HOH . G 5 HOH A 84 275 95 HOH HOH . G 5 HOH A 85 276 96 HOH HOH . G 5 HOH A 86 277 98 HOH HOH . G 5 HOH A 87 278 99 HOH HOH . G 5 HOH A 88 279 100 HOH HOH . G 5 HOH A 89 280 101 HOH HOH . G 5 HOH A 90 281 102 HOH HOH . G 5 HOH A 91 282 103 HOH HOH . G 5 HOH A 92 283 104 HOH HOH . G 5 HOH A 93 284 105 HOH HOH . G 5 HOH A 94 285 106 HOH HOH . G 5 HOH A 95 286 107 HOH HOH . G 5 HOH A 96 287 108 HOH HOH . G 5 HOH A 97 288 109 HOH HOH . G 5 HOH A 98 289 111 HOH HOH . G 5 HOH A 99 290 112 HOH HOH . G 5 HOH A 100 291 113 HOH HOH . G 5 HOH A 101 292 114 HOH HOH . G 5 HOH A 102 293 116 HOH HOH . G 5 HOH A 103 294 118 HOH HOH . G 5 HOH A 104 295 119 HOH HOH . G 5 HOH A 105 296 120 HOH HOH . G 5 HOH A 106 297 121 HOH HOH . G 5 HOH A 107 298 122 HOH HOH . G 5 HOH A 108 299 123 HOH HOH . G 5 HOH A 109 300 124 HOH HOH . G 5 HOH A 110 301 125 HOH HOH . G 5 HOH A 111 302 126 HOH HOH . G 5 HOH A 112 303 127 HOH HOH . G 5 HOH A 113 304 128 HOH HOH . G 5 HOH A 114 305 129 HOH HOH . G 5 HOH A 115 306 131 HOH HOH . G 5 HOH A 116 307 132 HOH HOH . G 5 HOH A 117 308 133 HOH HOH . G 5 HOH A 118 309 134 HOH HOH . G 5 HOH A 119 310 135 HOH HOH . G 5 HOH A 120 311 136 HOH HOH . G 5 HOH A 121 312 137 HOH HOH . G 5 HOH A 122 313 138 HOH HOH . G 5 HOH A 123 314 139 HOH HOH . G 5 HOH A 124 315 140 HOH HOH . G 5 HOH A 125 316 141 HOH HOH . G 5 HOH A 126 317 142 HOH HOH . G 5 HOH A 127 318 143 HOH HOH . G 5 HOH A 128 319 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C "C'1" 51P . . . B 2 3.551 -3.317 3.336 1 17.6 ? "C'1" 51P 187 A 1 HETATM 2 C "C'2" 51P . . . B 2 4.914 -3.025 3.415 1 20.57 ? "C'2" 51P 187 A 1 HETATM 3 C "C'3" 51P . . . B 2 5.856 -3.98 3.056 1 20.34 ? "C'3" 51P 187 A 1 HETATM 4 C "C'4" 51P . . . B 2 5.411 -5.217 2.606 1 19.15 ? "C'4" 51P 187 A 1 HETATM 5 C "C'5" 51P . . . B 2 4.053 -5.516 2.538 1 19.55 ? "C'5" 51P 187 A 1 HETATM 6 C "C'6" 51P . . . B 2 3.116 -4.569 2.896 1 17.08 ? "C'6" 51P 187 A 1 HETATM 7 N N1' 51P . . . B 2 1.671 -4.298 9.427 1 12.27 ? N1' 51P 187 A 1 HETATM 8 C C10 51P . . . B 2 2.024 -1.41 2.574 1 19.47 ? C10 51P 187 A 1 HETATM 9 C C11 51P . . . B 2 2.648 -2.319 3.692 1 17.43 ? C11 51P 187 A 1 HETATM 10 C C13 51P . . . B 2 6.807 -1.56 3.665 1 23.15 ? C13 51P 187 A 1 HETATM 11 O O13 51P . . . B 2 5.288 -1.782 3.879 1 20.6 ? O13 51P 187 A 1 HETATM 12 C C2' 51P . . . B 2 0.546 -3.8 9.846 1 11.72 ? C2' 51P 187 A 1 HETATM 13 N N2' 51P . . . B 2 0.105 -4.216 11.003 1 8.86 ? N2' 51P 187 A 1 HETATM 14 N N3' 51P . . . B 2 -0.108 -2.88 9.062 1 9.78 ? N3' 51P 187 A 1 HETATM 15 C C4' 51P . . . B 2 0.326 -2.462 7.866 1 12.66 ? C4' 51P 187 A 1 HETATM 16 N N4' 51P . . . B 2 -0.456 -1.534 7.236 1 10.78 ? N4' 51P 187 A 1 HETATM 17 C C5' 51P . . . B 2 1.524 -3.017 7.394 1 14.1 ? C5' 51P 187 A 1 HETATM 18 C C6' 51P . . . B 2 2.347 -2.941 6.259 1 15.74 ? C6' 51P 187 A 1 HETATM 19 C C7' 51P . . . B 2 3.399 -3.759 6.43 1 18.57 ? C7' 51P 187 A 1 HETATM 20 C C8' 51P . . . B 2 2.166 -3.947 8.247 1 13.36 ? C8' 51P 187 A 1 HETATM 21 O O8' 51P . . . B 2 3.271 -4.411 7.645 1 17.67 ? O8' 51P 187 A 1 HETATM 22 C C9' 51P . . . B 2 2.101 -2.03 5.073 1 16.34 ? C9' 51P 187 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 731 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 22 #