data_3GYZ
#
_model_server_result.job_id            Lcj2aJsmnQVPOKHBMD9GYQ 
_model_server_result.datetime_utc      '2024-11-28 20:13:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":154}' 
#
_entry.id    3GYZ 
#
_exptl.entry_id    3GYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GYZ 
_cell.length_a            115.15 
_cell.length_b            115.15 
_cell.length_c            75.46 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GYZ 
_atom_sites.fract_transf_matrix[1][1]    0.008684 
_atom_sites.fract_transf_matrix[1][2]    0.005014 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 152 1 SO4 SO4 . 
D 3 GOL A 1 153 7 GOL GOL . 
E 3 GOL A 1 154 8 GOL GOL . 
F 3 GOL A 1 155 9 GOL GOL . 
G 2 SO4 B 1 152 2 SO4 SO4 . 
H 3 GOL B 1 153 3 GOL GOL . 
I 3 GOL B 1 154 4 GOL GOL . 
J 3 GOL B 1 155 5 GOL GOL . 
K 3 GOL B 1 156 6 GOL GOL . 
L 4 NA B 1 157 10 NA NA . 
M 5 HOH A 1 156 1 HOH HOH . 
M 5 HOH A 2 157 2 HOH HOH . 
M 5 HOH A 3 158 6 HOH HOH . 
M 5 HOH A 4 159 8 HOH HOH . 
M 5 HOH A 5 160 13 HOH HOH . 
M 5 HOH A 6 161 15 HOH HOH . 
M 5 HOH A 7 162 16 HOH HOH . 
M 5 HOH A 8 163 19 HOH HOH . 
M 5 HOH A 9 164 21 HOH HOH . 
M 5 HOH A 10 165 26 HOH HOH . 
M 5 HOH A 11 166 28 HOH HOH . 
M 5 HOH A 12 167 29 HOH HOH . 
M 5 HOH A 13 168 30 HOH HOH . 
M 5 HOH A 14 169 36 HOH HOH . 
M 5 HOH A 15 170 39 HOH HOH . 
M 5 HOH A 16 171 40 HOH HOH . 
M 5 HOH A 17 172 46 HOH HOH . 
M 5 HOH A 18 173 48 HOH HOH . 
M 5 HOH A 19 174 49 HOH HOH . 
M 5 HOH A 20 175 52 HOH HOH . 
M 5 HOH A 21 176 53 HOH HOH . 
M 5 HOH A 22 177 54 HOH HOH . 
M 5 HOH A 23 178 56 HOH HOH . 
M 5 HOH A 24 179 59 HOH HOH . 
M 5 HOH A 25 180 60 HOH HOH . 
M 5 HOH A 26 181 61 HOH HOH . 
M 5 HOH A 27 182 62 HOH HOH . 
M 5 HOH A 28 183 64 HOH HOH . 
M 5 HOH A 29 184 66 HOH HOH . 
M 5 HOH A 30 185 67 HOH HOH . 
M 5 HOH A 31 186 68 HOH HOH . 
M 5 HOH A 32 187 71 HOH HOH . 
M 5 HOH A 33 188 72 HOH HOH . 
M 5 HOH A 34 189 73 HOH HOH . 
M 5 HOH A 35 190 74 HOH HOH . 
M 5 HOH A 36 191 75 HOH HOH . 
M 5 HOH A 37 192 76 HOH HOH . 
M 5 HOH A 38 193 79 HOH HOH . 
M 5 HOH A 39 194 80 HOH HOH . 
M 5 HOH A 40 195 81 HOH HOH . 
M 5 HOH A 41 196 82 HOH HOH . 
M 5 HOH A 42 197 84 HOH HOH . 
M 5 HOH A 43 198 85 HOH HOH . 
M 5 HOH A 44 199 9 HOH HOH . 
N 5 HOH B 1 158 3 HOH HOH . 
N 5 HOH B 2 159 4 HOH HOH . 
N 5 HOH B 3 160 5 HOH HOH . 
N 5 HOH B 4 161 7 HOH HOH . 
N 5 HOH B 5 163 10 HOH HOH . 
N 5 HOH B 6 164 11 HOH HOH . 
N 5 HOH B 7 165 12 HOH HOH . 
N 5 HOH B 8 166 14 HOH HOH . 
N 5 HOH B 9 167 17 HOH HOH . 
N 5 HOH B 10 168 18 HOH HOH . 
N 5 HOH B 11 169 20 HOH HOH . 
N 5 HOH B 12 170 22 HOH HOH . 
N 5 HOH B 13 171 23 HOH HOH . 
N 5 HOH B 14 172 24 HOH HOH . 
N 5 HOH B 15 173 25 HOH HOH . 
N 5 HOH B 16 174 27 HOH HOH . 
N 5 HOH B 17 175 31 HOH HOH . 
N 5 HOH B 18 176 32 HOH HOH . 
N 5 HOH B 19 177 33 HOH HOH . 
N 5 HOH B 20 178 34 HOH HOH . 
N 5 HOH B 21 179 35 HOH HOH . 
N 5 HOH B 22 180 37 HOH HOH . 
N 5 HOH B 23 181 38 HOH HOH . 
N 5 HOH B 24 182 41 HOH HOH . 
N 5 HOH B 25 183 42 HOH HOH . 
N 5 HOH B 26 184 43 HOH HOH . 
N 5 HOH B 27 185 44 HOH HOH . 
N 5 HOH B 28 186 45 HOH HOH . 
N 5 HOH B 29 187 47 HOH HOH . 
N 5 HOH B 30 188 50 HOH HOH . 
N 5 HOH B 31 189 51 HOH HOH . 
N 5 HOH B 32 190 55 HOH HOH . 
N 5 HOH B 33 191 57 HOH HOH . 
N 5 HOH B 34 192 58 HOH HOH . 
N 5 HOH B 35 193 63 HOH HOH . 
N 5 HOH B 36 194 65 HOH HOH . 
N 5 HOH B 37 195 69 HOH HOH . 
N 5 HOH B 38 196 70 HOH HOH . 
N 5 HOH B 39 197 77 HOH HOH . 
N 5 HOH B 40 198 78 HOH HOH . 
N 5 HOH B 41 199 83 HOH HOH . 
N 5 HOH B 42 200 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 66.836 13.662 24.48 1 74.49 ? C1 GOL 154 A 1 
HETATM 2 O O1 GOL . . . E 3 66.102 14.473 23.572 1 68.34 ? O1 GOL 154 A 1 
HETATM 3 C C2 GOL . . . E 3 66.157 13.691 25.862 1 78.35 ? C2 GOL 154 A 1 
HETATM 4 O O2 GOL . . . E 3 64.764 13.746 25.599 1 81.82 ? O2 GOL 154 A 1 
HETATM 5 C C3 GOL . . . E 3 66.443 12.432 26.746 1 79.18 ? C3 GOL 154 A 1 
HETATM 6 O O3 GOL . . . E 3 65.936 11.147 26.284 1 73.68 ? O3 GOL 154 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
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