data_3GYZ # _model_server_result.job_id exOZ4p0FrjGW1Milxf4S0A _model_server_result.datetime_utc '2024-11-28 20:09:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":157}' # _entry.id 3GYZ # _exptl.entry_id 3GYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GYZ _cell.length_a 115.15 _cell.length_b 115.15 _cell.length_c 75.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GYZ _atom_sites.fract_transf_matrix[1][1] 0.008684 _atom_sites.fract_transf_matrix[1][2] 0.005014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 152 1 SO4 SO4 . D 3 GOL A 1 153 7 GOL GOL . E 3 GOL A 1 154 8 GOL GOL . F 3 GOL A 1 155 9 GOL GOL . G 2 SO4 B 1 152 2 SO4 SO4 . H 3 GOL B 1 153 3 GOL GOL . I 3 GOL B 1 154 4 GOL GOL . J 3 GOL B 1 155 5 GOL GOL . K 3 GOL B 1 156 6 GOL GOL . L 4 NA B 1 157 10 NA NA . M 5 HOH A 1 156 1 HOH HOH . M 5 HOH A 2 157 2 HOH HOH . M 5 HOH A 3 158 6 HOH HOH . M 5 HOH A 4 159 8 HOH HOH . M 5 HOH A 5 160 13 HOH HOH . M 5 HOH A 6 161 15 HOH HOH . M 5 HOH A 7 162 16 HOH HOH . M 5 HOH A 8 163 19 HOH HOH . M 5 HOH A 9 164 21 HOH HOH . M 5 HOH A 10 165 26 HOH HOH . M 5 HOH A 11 166 28 HOH HOH . M 5 HOH A 12 167 29 HOH HOH . M 5 HOH A 13 168 30 HOH HOH . M 5 HOH A 14 169 36 HOH HOH . M 5 HOH A 15 170 39 HOH HOH . M 5 HOH A 16 171 40 HOH HOH . M 5 HOH A 17 172 46 HOH HOH . M 5 HOH A 18 173 48 HOH HOH . M 5 HOH A 19 174 49 HOH HOH . M 5 HOH A 20 175 52 HOH HOH . M 5 HOH A 21 176 53 HOH HOH . M 5 HOH A 22 177 54 HOH HOH . M 5 HOH A 23 178 56 HOH HOH . M 5 HOH A 24 179 59 HOH HOH . M 5 HOH A 25 180 60 HOH HOH . M 5 HOH A 26 181 61 HOH HOH . M 5 HOH A 27 182 62 HOH HOH . M 5 HOH A 28 183 64 HOH HOH . M 5 HOH A 29 184 66 HOH HOH . M 5 HOH A 30 185 67 HOH HOH . M 5 HOH A 31 186 68 HOH HOH . M 5 HOH A 32 187 71 HOH HOH . M 5 HOH A 33 188 72 HOH HOH . M 5 HOH A 34 189 73 HOH HOH . M 5 HOH A 35 190 74 HOH HOH . M 5 HOH A 36 191 75 HOH HOH . M 5 HOH A 37 192 76 HOH HOH . M 5 HOH A 38 193 79 HOH HOH . M 5 HOH A 39 194 80 HOH HOH . M 5 HOH A 40 195 81 HOH HOH . M 5 HOH A 41 196 82 HOH HOH . M 5 HOH A 42 197 84 HOH HOH . M 5 HOH A 43 198 85 HOH HOH . M 5 HOH A 44 199 9 HOH HOH . N 5 HOH B 1 158 3 HOH HOH . N 5 HOH B 2 159 4 HOH HOH . N 5 HOH B 3 160 5 HOH HOH . N 5 HOH B 4 161 7 HOH HOH . N 5 HOH B 5 163 10 HOH HOH . N 5 HOH B 6 164 11 HOH HOH . N 5 HOH B 7 165 12 HOH HOH . N 5 HOH B 8 166 14 HOH HOH . N 5 HOH B 9 167 17 HOH HOH . N 5 HOH B 10 168 18 HOH HOH . N 5 HOH B 11 169 20 HOH HOH . N 5 HOH B 12 170 22 HOH HOH . N 5 HOH B 13 171 23 HOH HOH . N 5 HOH B 14 172 24 HOH HOH . N 5 HOH B 15 173 25 HOH HOH . N 5 HOH B 16 174 27 HOH HOH . N 5 HOH B 17 175 31 HOH HOH . N 5 HOH B 18 176 32 HOH HOH . N 5 HOH B 19 177 33 HOH HOH . N 5 HOH B 20 178 34 HOH HOH . N 5 HOH B 21 179 35 HOH HOH . N 5 HOH B 22 180 37 HOH HOH . N 5 HOH B 23 181 38 HOH HOH . N 5 HOH B 24 182 41 HOH HOH . N 5 HOH B 25 183 42 HOH HOH . N 5 HOH B 26 184 43 HOH HOH . N 5 HOH B 27 185 44 HOH HOH . N 5 HOH B 28 186 45 HOH HOH . N 5 HOH B 29 187 47 HOH HOH . N 5 HOH B 30 188 50 HOH HOH . N 5 HOH B 31 189 51 HOH HOH . N 5 HOH B 32 190 55 HOH HOH . N 5 HOH B 33 191 57 HOH HOH . N 5 HOH B 34 192 58 HOH HOH . N 5 HOH B 35 193 63 HOH HOH . N 5 HOH B 36 194 65 HOH HOH . N 5 HOH B 37 195 69 HOH HOH . N 5 HOH B 38 196 70 HOH HOH . N 5 HOH B 39 197 77 HOH HOH . N 5 HOH B 40 198 78 HOH HOH . N 5 HOH B 41 199 83 HOH HOH . N 5 HOH B 42 200 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 46.133 _atom_site.Cartn_y -7.046 _atom_site.Cartn_z 3.69 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 157 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #