data_3GZ1
#
_model_server_result.job_id            fwRup6yR3ZXApc7QpNuBHA 
_model_server_result.datetime_utc      '2024-11-12 20:35:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":153}' 
#
_entry.id    3GZ1 
#
_exptl.entry_id    3GZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GZ1 
_cell.length_a            73.31 
_cell.length_b            97.09 
_cell.length_c            106.53 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GZ1 
_atom_sites.fract_transf_matrix[1][1]    0.013641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 152 2 GOL GOL . 
F 3 GOL A 1 153 3 GOL GOL . 
G 3 GOL B 1 152 1 GOL GOL . 
H 4 HOH A 1 154 1 HOH HOH . 
H 4 HOH A 2 155 4 HOH HOH . 
H 4 HOH A 3 156 5 HOH HOH . 
H 4 HOH A 4 157 6 HOH HOH . 
H 4 HOH A 5 158 7 HOH HOH . 
H 4 HOH A 6 159 8 HOH HOH . 
H 4 HOH A 7 160 9 HOH HOH . 
H 4 HOH A 8 161 10 HOH HOH . 
H 4 HOH A 9 162 12 HOH HOH . 
H 4 HOH A 10 163 14 HOH HOH . 
H 4 HOH A 11 164 17 HOH HOH . 
H 4 HOH A 12 165 18 HOH HOH . 
H 4 HOH A 13 166 20 HOH HOH . 
H 4 HOH A 14 167 21 HOH HOH . 
H 4 HOH A 15 168 22 HOH HOH . 
H 4 HOH A 16 169 23 HOH HOH . 
H 4 HOH A 17 170 24 HOH HOH . 
H 4 HOH A 18 171 35 HOH HOH . 
H 4 HOH A 19 172 36 HOH HOH . 
H 4 HOH A 20 173 39 HOH HOH . 
H 4 HOH A 21 174 42 HOH HOH . 
H 4 HOH A 22 175 43 HOH HOH . 
H 4 HOH A 23 176 44 HOH HOH . 
H 4 HOH A 24 177 46 HOH HOH . 
H 4 HOH A 25 178 47 HOH HOH . 
H 4 HOH A 26 179 48 HOH HOH . 
H 4 HOH A 27 180 49 HOH HOH . 
H 4 HOH A 28 181 50 HOH HOH . 
H 4 HOH A 29 182 51 HOH HOH . 
H 4 HOH A 30 183 52 HOH HOH . 
H 4 HOH A 31 184 55 HOH HOH . 
H 4 HOH A 32 185 57 HOH HOH . 
H 4 HOH A 33 186 60 HOH HOH . 
H 4 HOH A 34 187 63 HOH HOH . 
H 4 HOH A 35 188 64 HOH HOH . 
I 4 HOH B 1 153 2 HOH HOH . 
I 4 HOH B 2 154 3 HOH HOH . 
I 4 HOH B 3 155 11 HOH HOH . 
I 4 HOH B 4 156 13 HOH HOH . 
I 4 HOH B 5 157 15 HOH HOH . 
I 4 HOH B 6 158 16 HOH HOH . 
I 4 HOH B 7 159 19 HOH HOH . 
I 4 HOH B 8 160 25 HOH HOH . 
I 4 HOH B 9 161 26 HOH HOH . 
I 4 HOH B 10 162 27 HOH HOH . 
I 4 HOH B 11 163 28 HOH HOH . 
I 4 HOH B 12 164 29 HOH HOH . 
I 4 HOH B 13 165 30 HOH HOH . 
I 4 HOH B 14 166 31 HOH HOH . 
I 4 HOH B 15 167 32 HOH HOH . 
I 4 HOH B 16 168 33 HOH HOH . 
I 4 HOH B 17 169 34 HOH HOH . 
I 4 HOH B 18 170 37 HOH HOH . 
I 4 HOH B 19 171 38 HOH HOH . 
I 4 HOH B 20 172 40 HOH HOH . 
I 4 HOH B 21 173 41 HOH HOH . 
I 4 HOH B 22 174 53 HOH HOH . 
I 4 HOH B 23 175 56 HOH HOH . 
I 4 HOH B 24 176 58 HOH HOH . 
I 4 HOH B 25 177 59 HOH HOH . 
I 4 HOH B 26 178 61 HOH HOH . 
I 4 HOH B 27 179 62 HOH HOH . 
J 4 HOH P 1 45 45 HOH HOH . 
J 4 HOH P 2 73 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -14.569 41.131 -17.593 1 75.21 ? C1 GOL 153 A 1 
HETATM 2 O O1 GOL . . . F 3 -15.501 42.108 -17.175 1 72.55 ? O1 GOL 153 A 1 
HETATM 3 C C2 GOL . . . F 3 -14.586 41.097 -19.115 1 76.44 ? C2 GOL 153 A 1 
HETATM 4 O O2 GOL . . . F 3 -14.493 42.404 -19.671 1 77.62 ? O2 GOL 153 A 1 
HETATM 5 C C3 GOL . . . F 3 -13.419 40.267 -19.612 1 76.98 ? C3 GOL 153 A 1 
HETATM 6 O O3 GOL . . . F 3 -13.214 39.084 -18.862 1 76.43 ? O3 GOL 153 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#