data_3GZ9 # _model_server_result.job_id n8R2iwGuV5YPWtGRqDowRw _model_server_result.datetime_utc '2024-11-30 04:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3GZ9 # _exptl.entry_id 3GZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.529 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2,3-dimethyl-4-{[2-(prop-2-yn-1-yloxy)-4-{[4-(trifluoromethyl)phenoxy]methyl}phenyl]sulfanyl}phenoxy)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GZ9 _cell.length_a 94.577 _cell.length_b 92.129 _cell.length_c 39.555 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H23 F3 O5 S' _chem_comp.formula_weight 516.529 _chem_comp.id D32 _chem_comp.mon_nstd_flag . _chem_comp.name '(2,3-dimethyl-4-{[2-(prop-2-yn-1-yloxy)-4-{[4-(trifluoromethyl)phenoxy]methyl}phenyl]sulfanyl}phenoxy)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 O22 D32 sing 128 n n O22 HO22 D32 sing 129 n n O21 C17 D32 doub 130 n n C17 C14 D32 sing 131 n n O11 C14 D32 sing 132 n n C14 H14 D32 sing 133 n n C14 H14A D32 sing 134 n n O11 C5 D32 sing 135 n n C2 C5 D32 doub 136 n y C5 C10 D32 sing 137 n y C10 C8 D32 doub 138 n y C10 H10 D32 sing 139 n n C3 C8 D32 sing 140 n y C8 H8 D32 sing 141 n n C6 C2 D32 sing 142 n n C2 C1 D32 sing 143 n y C6 H6 D32 sing 144 n n C6 H6A D32 sing 145 n n C6 H6B D32 sing 146 n n C4 C1 D32 sing 147 n n C1 C3 D32 doub 148 n y C4 H4 D32 sing 149 n n C4 H4A D32 sing 150 n n C4 H4B D32 sing 151 n n C3 S7 D32 sing 152 n n S7 C13 D32 sing 153 n n C13 C15 D32 doub 154 n y C13 C16 D32 sing 155 n y C16 C20 D32 doub 156 n y C16 H16 D32 sing 157 n n C20 C23 D32 sing 158 n y C20 H20 D32 sing 159 n n O1 C15 D32 sing 160 n n C15 C18 D32 sing 161 n y O1 C7 D32 sing 162 n n C7 C11 D32 sing 163 n n C7 H7 D32 sing 164 n n C7 H7A D32 sing 165 n n C11 C19 D32 trip 166 n n C19 H19 D32 sing 167 n n C18 C23 D32 doub 168 n y C18 H18 D32 sing 169 n n C23 C24 D32 sing 170 n n O25 C24 D32 sing 171 n n C24 H24 D32 sing 172 n n C24 H24A D32 sing 173 n n C26 O25 D32 sing 174 n n C27 C26 D32 doub 175 n y C26 C28 D32 sing 176 n y C30 C28 D32 doub 177 n y C28 H28 D32 sing 178 n n C31 C30 D32 sing 179 n y C30 H30 D32 sing 180 n n C29 C27 D32 sing 181 n y C27 H27 D32 sing 182 n n C29 C31 D32 doub 183 n y C29 H29 D32 sing 184 n n C32 C31 D32 sing 185 n n F35 C32 D32 sing 186 n n F33 C32 D32 sing 187 n n C32 F34 D32 sing 188 n n # _atom_sites.entry_id 3GZ9 _atom_sites.fract_transf_matrix[1][1] 0.010573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B7G A 1 570 570 B7G B7G . C 3 D32 A 1 1 1 D32 D32 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 31 31 HOH HOH . D 4 HOH A 30 32 32 HOH HOH . D 4 HOH A 31 33 33 HOH HOH . D 4 HOH A 32 34 34 HOH HOH . D 4 HOH A 33 35 35 HOH HOH . D 4 HOH A 34 36 36 HOH HOH . D 4 HOH A 35 37 37 HOH HOH . D 4 HOH A 36 38 38 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . D 4 HOH A 38 40 40 HOH HOH . D 4 HOH A 39 41 41 HOH HOH . D 4 HOH A 40 42 42 HOH HOH . D 4 HOH A 41 43 43 HOH HOH . D 4 HOH A 42 44 44 HOH HOH . D 4 HOH A 43 45 45 HOH HOH . D 4 HOH A 44 46 46 HOH HOH . D 4 HOH A 45 47 47 HOH HOH . D 4 HOH A 46 48 48 HOH HOH . D 4 HOH A 47 49 49 HOH HOH . D 4 HOH A 48 50 50 HOH HOH . D 4 HOH A 49 51 51 HOH HOH . D 4 HOH A 50 52 52 HOH HOH . D 4 HOH A 51 53 53 HOH HOH . D 4 HOH A 52 54 54 HOH HOH . D 4 HOH A 53 55 55 HOH HOH . D 4 HOH A 54 56 56 HOH HOH . D 4 HOH A 55 57 57 HOH HOH . D 4 HOH A 56 58 58 HOH HOH . D 4 HOH A 57 59 59 HOH HOH . D 4 HOH A 58 61 61 HOH HOH . D 4 HOH A 59 62 62 HOH HOH . D 4 HOH A 60 63 63 HOH HOH . D 4 HOH A 61 64 64 HOH HOH . D 4 HOH A 62 66 66 HOH HOH . D 4 HOH A 63 67 67 HOH HOH . D 4 HOH A 64 68 68 HOH HOH . D 4 HOH A 65 69 69 HOH HOH . D 4 HOH A 66 70 70 HOH HOH . D 4 HOH A 67 71 71 HOH HOH . D 4 HOH A 68 72 72 HOH HOH . D 4 HOH A 69 73 73 HOH HOH . D 4 HOH A 70 74 74 HOH HOH . D 4 HOH A 71 75 75 HOH HOH . D 4 HOH A 72 76 76 HOH HOH . D 4 HOH A 73 78 78 HOH HOH . D 4 HOH A 74 79 79 HOH HOH . D 4 HOH A 75 80 80 HOH HOH . D 4 HOH A 76 83 83 HOH HOH . D 4 HOH A 77 85 85 HOH HOH . D 4 HOH A 78 86 86 HOH HOH . D 4 HOH A 79 87 87 HOH HOH . D 4 HOH A 80 88 88 HOH HOH . D 4 HOH A 81 89 89 HOH HOH . D 4 HOH A 82 90 90 HOH HOH . D 4 HOH A 83 92 92 HOH HOH . D 4 HOH A 84 93 93 HOH HOH . D 4 HOH A 85 94 94 HOH HOH . D 4 HOH A 86 95 95 HOH HOH . D 4 HOH A 87 96 96 HOH HOH . D 4 HOH A 88 97 97 HOH HOH . D 4 HOH A 89 99 99 HOH HOH . D 4 HOH A 90 100 100 HOH HOH . D 4 HOH A 91 101 101 HOH HOH . D 4 HOH A 92 102 102 HOH HOH . D 4 HOH A 93 103 103 HOH HOH . D 4 HOH A 94 104 104 HOH HOH . D 4 HOH A 95 105 105 HOH HOH . D 4 HOH A 96 106 106 HOH HOH . D 4 HOH A 97 107 107 HOH HOH . D 4 HOH A 98 108 108 HOH HOH . D 4 HOH A 99 109 109 HOH HOH . D 4 HOH A 100 110 110 HOH HOH . D 4 HOH A 101 112 112 HOH HOH . D 4 HOH A 102 113 113 HOH HOH . D 4 HOH A 103 114 114 HOH HOH . D 4 HOH A 104 115 115 HOH HOH . D 4 HOH A 105 116 116 HOH HOH . D 4 HOH A 106 118 118 HOH HOH . D 4 HOH A 107 120 120 HOH HOH . D 4 HOH A 108 121 121 HOH HOH . D 4 HOH A 109 122 122 HOH HOH . D 4 HOH A 110 123 123 HOH HOH . D 4 HOH A 111 125 125 HOH HOH . D 4 HOH A 112 126 126 HOH HOH . D 4 HOH A 113 127 127 HOH HOH . D 4 HOH A 114 128 128 HOH HOH . D 4 HOH A 115 130 130 HOH HOH . D 4 HOH A 116 131 131 HOH HOH . D 4 HOH A 117 132 132 HOH HOH . D 4 HOH A 118 133 133 HOH HOH . D 4 HOH A 119 134 134 HOH HOH . D 4 HOH A 120 135 135 HOH HOH . D 4 HOH A 121 136 136 HOH HOH . D 4 HOH A 122 138 138 HOH HOH . D 4 HOH A 123 139 139 HOH HOH . D 4 HOH A 124 140 140 HOH HOH . D 4 HOH A 125 141 141 HOH HOH . D 4 HOH A 126 142 142 HOH HOH . D 4 HOH A 127 143 143 HOH HOH . D 4 HOH A 128 144 144 HOH HOH . D 4 HOH A 129 145 145 HOH HOH . D 4 HOH A 130 146 146 HOH HOH . D 4 HOH A 131 147 147 HOH HOH . D 4 HOH A 132 148 148 HOH HOH . D 4 HOH A 133 149 149 HOH HOH . D 4 HOH A 134 150 150 HOH HOH . D 4 HOH A 135 151 151 HOH HOH . D 4 HOH A 136 152 152 HOH HOH . D 4 HOH A 137 153 153 HOH HOH . D 4 HOH A 138 154 154 HOH HOH . D 4 HOH A 139 155 155 HOH HOH . D 4 HOH A 140 156 156 HOH HOH . D 4 HOH A 141 157 157 HOH HOH . D 4 HOH A 142 158 158 HOH HOH . D 4 HOH A 143 159 159 HOH HOH . D 4 HOH A 144 160 160 HOH HOH . D 4 HOH A 145 162 162 HOH HOH . D 4 HOH A 146 163 163 HOH HOH . D 4 HOH A 147 164 164 HOH HOH . D 4 HOH A 148 165 165 HOH HOH . D 4 HOH A 149 166 166 HOH HOH . D 4 HOH A 150 167 167 HOH HOH . D 4 HOH A 151 168 168 HOH HOH . D 4 HOH A 152 169 169 HOH HOH . D 4 HOH A 153 171 171 HOH HOH . D 4 HOH A 154 172 172 HOH HOH . D 4 HOH A 155 174 174 HOH HOH . D 4 HOH A 156 175 175 HOH HOH . D 4 HOH A 157 180 180 HOH HOH . D 4 HOH A 158 181 181 HOH HOH . D 4 HOH A 159 182 182 HOH HOH . D 4 HOH A 160 183 183 HOH HOH . D 4 HOH A 161 184 184 HOH HOH . D 4 HOH A 162 185 185 HOH HOH . D 4 HOH A 163 186 186 HOH HOH . D 4 HOH A 164 187 187 HOH HOH . D 4 HOH A 165 188 188 HOH HOH . D 4 HOH A 166 189 189 HOH HOH . D 4 HOH A 167 190 190 HOH HOH . D 4 HOH A 168 191 191 HOH HOH . D 4 HOH A 169 192 192 HOH HOH . D 4 HOH A 170 193 193 HOH HOH . D 4 HOH A 171 194 194 HOH HOH . D 4 HOH A 172 476 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 D32 . . . C 3 38.621 77.797 -5.12 1 29.23 ? O22 D32 1 A 1 HETATM 2 C C17 D32 . . . C 3 38.072 76.78 -5.582 1 18.68 ? C17 D32 1 A 1 HETATM 3 O O21 D32 . . . C 3 38.747 76.104 -6.348 1 21.57 ? O21 D32 1 A 1 HETATM 4 C C14 D32 . . . C 3 36.62 76.459 -5.37 1 22.25 ? C14 D32 1 A 1 HETATM 5 O O11 D32 . . . C 3 36.307 75.227 -6.072 1 18.82 ? O11 D32 1 A 1 HETATM 6 C C5 D32 . . . C 3 36.656 74.003 -5.479 1 18.62 ? C5 D32 1 A 1 HETATM 7 C C10 D32 . . . C 3 37.594 73.793 -4.487 1 21.07 ? C10 D32 1 A 1 HETATM 8 C C8 D32 . . . C 3 37.894 72.47 -3.942 1 18.76 ? C8 D32 1 A 1 HETATM 9 C C2 D32 . . . C 3 36.012 72.889 -5.974 1 22.18 ? C2 D32 1 A 1 HETATM 10 C C6 D32 . . . C 3 35.032 73.079 -7.109 1 25.67 ? C6 D32 1 A 1 HETATM 11 C C1 D32 . . . C 3 36.315 71.614 -5.519 1 22.75 ? C1 D32 1 A 1 HETATM 12 C C4 D32 . . . C 3 35.561 70.504 -6.181 1 23.63 ? C4 D32 1 A 1 HETATM 13 C C3 D32 . . . C 3 37.223 71.375 -4.49 1 25.31 ? C3 D32 1 A 1 HETATM 14 S S7 D32 . . . C 3 37.516 69.758 -3.951 1 29.43 ? S7 D32 1 A 1 HETATM 15 C C13 D32 . . . C 3 36.517 69.557 -2.569 1 24.8 ? C13 D32 1 A 1 HETATM 16 C C16 D32 . . . C 3 35.915 70.632 -1.937 1 15.93 ? C16 D32 1 A 1 HETATM 17 C C20 D32 . . . C 3 35.071 70.492 -0.794 1 20.19 ? C20 D32 1 A 1 HETATM 18 C C15 D32 . . . C 3 36.307 68.307 -2.09 1 21.79 ? C15 D32 1 A 1 HETATM 19 O O1 D32 . . . C 3 36.944 67.232 -2.727 1 24.8 ? O1 D32 1 A 1 HETATM 20 C C7 D32 . . . C 3 36.617 65.997 -2.084 1 23.56 ? C7 D32 1 A 1 HETATM 21 C C11 D32 . . . C 3 37.611 65.778 -1.039 1 20.8 ? C11 D32 1 A 1 HETATM 22 C C19 D32 . . . C 3 38.525 65.505 -0.168 1 26 ? C19 D32 1 A 1 HETATM 23 C C18 D32 . . . C 3 35.478 68.154 -0.941 1 20.67 ? C18 D32 1 A 1 HETATM 24 C C23 D32 . . . C 3 34.877 69.233 -0.267 1 23.89 ? C23 D32 1 A 1 HETATM 25 C C24 D32 . . . C 3 34.007 69.096 0.976 1 27.78 ? C24 D32 1 A 1 HETATM 26 O O25 D32 . . . C 3 32.924 70.01 0.818 1 31.88 ? O25 D32 1 A 1 HETATM 27 C C26 D32 . . . C 3 31.657 69.687 0.304 1 29.06 ? C26 D32 1 A 1 HETATM 28 C C28 D32 . . . C 3 30.525 70.217 0.926 1 27.52 ? C28 D32 1 A 1 HETATM 29 C C30 D32 . . . C 3 29.28 69.897 0.488 1 25.38 ? C30 D32 1 A 1 HETATM 30 C C27 D32 . . . C 3 31.499 68.786 -0.746 1 32.41 ? C27 D32 1 A 1 HETATM 31 C C29 D32 . . . C 3 30.234 68.454 -1.181 1 29.9 ? C29 D32 1 A 1 HETATM 32 C C31 D32 . . . C 3 29.132 69.043 -0.588 1 28.87 ? C31 D32 1 A 1 HETATM 33 C C32 D32 . . . C 3 27.757 68.621 -1.047 1 27 ? C32 D32 1 A 1 HETATM 34 F F34 D32 . . . C 3 27.016 68.168 -0.037 1 26.44 ? F34 D32 1 A 1 HETATM 35 F F35 D32 . . . C 3 27.837 67.569 -1.814 1 29.1 ? F35 D32 1 A 1 HETATM 36 F F33 D32 . . . C 3 27.172 69.583 -1.7 1 26.8 ? F33 D32 1 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 36 #