data_3GZ9 # _model_server_result.job_id qgVVO21iaKo26l2egM60Jw _model_server_result.datetime_utc '2024-10-31 08:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":570}' # _entry.id 3GZ9 # _exptl.entry_id 3GZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GZ9 _cell.length_a 94.577 _cell.length_b 92.129 _cell.length_c 39.555 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 70 n n C5 C4 B7G sing 71 n n C5 C6 B7G sing 72 n n C5 H5 B7G sing 73 n n O5 C1 B7G sing 74 n n C1 C2 B7G sing 75 n n C1 O1 B7G sing 76 n n C1 H1 B7G sing 77 n n C2 C3 B7G sing 78 n n C2 O2 B7G sing 79 n n C2 H2 B7G sing 80 n n C3 C4 B7G sing 81 n n C3 O3 B7G sing 82 n n C3 H3 B7G sing 83 n n C4 O4 B7G sing 84 n n C4 H4 B7G sing 85 n n C6 O6 B7G sing 86 n n C6 H61 B7G sing 87 n n C6 H62 B7G sing 88 n n O1 C7 B7G sing 89 n n C7 C8 B7G sing 90 n n C7 H71 B7G sing 91 n n C7 H72 B7G sing 92 n n C8 C9 B7G sing 93 n n C8 H81 B7G sing 94 n n C8 H82 B7G sing 95 n n C9 C10 B7G sing 96 n n C9 H91 B7G sing 97 n n C9 H92 B7G sing 98 n n C10 C11 B7G sing 99 n n C10 H101 B7G sing 100 n n C10 H102 B7G sing 101 n n C11 C12 B7G sing 102 n n C11 H111 B7G sing 103 n n C11 H112 B7G sing 104 n n C12 C13 B7G sing 105 n n C12 H121 B7G sing 106 n n C12 H122 B7G sing 107 n n O2 HO2 B7G sing 108 n n O3 HO3 B7G sing 109 n n O4 HO4 B7G sing 110 n n O6 HO6 B7G sing 111 n n C13 H131 B7G sing 112 n n C13 H132 B7G sing 113 n n C13 H133 B7G sing 114 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3GZ9 _atom_sites.fract_transf_matrix[1][1] 0.010573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B7G A 1 570 570 B7G B7G . C 3 D32 A 1 1 1 D32 D32 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 31 31 HOH HOH . D 4 HOH A 30 32 32 HOH HOH . D 4 HOH A 31 33 33 HOH HOH . D 4 HOH A 32 34 34 HOH HOH . D 4 HOH A 33 35 35 HOH HOH . D 4 HOH A 34 36 36 HOH HOH . D 4 HOH A 35 37 37 HOH HOH . D 4 HOH A 36 38 38 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . D 4 HOH A 38 40 40 HOH HOH . D 4 HOH A 39 41 41 HOH HOH . D 4 HOH A 40 42 42 HOH HOH . D 4 HOH A 41 43 43 HOH HOH . D 4 HOH A 42 44 44 HOH HOH . D 4 HOH A 43 45 45 HOH HOH . D 4 HOH A 44 46 46 HOH HOH . D 4 HOH A 45 47 47 HOH HOH . D 4 HOH A 46 48 48 HOH HOH . D 4 HOH A 47 49 49 HOH HOH . D 4 HOH A 48 50 50 HOH HOH . D 4 HOH A 49 51 51 HOH HOH . D 4 HOH A 50 52 52 HOH HOH . D 4 HOH A 51 53 53 HOH HOH . D 4 HOH A 52 54 54 HOH HOH . D 4 HOH A 53 55 55 HOH HOH . D 4 HOH A 54 56 56 HOH HOH . D 4 HOH A 55 57 57 HOH HOH . D 4 HOH A 56 58 58 HOH HOH . D 4 HOH A 57 59 59 HOH HOH . D 4 HOH A 58 61 61 HOH HOH . D 4 HOH A 59 62 62 HOH HOH . D 4 HOH A 60 63 63 HOH HOH . D 4 HOH A 61 64 64 HOH HOH . D 4 HOH A 62 66 66 HOH HOH . D 4 HOH A 63 67 67 HOH HOH . D 4 HOH A 64 68 68 HOH HOH . D 4 HOH A 65 69 69 HOH HOH . D 4 HOH A 66 70 70 HOH HOH . D 4 HOH A 67 71 71 HOH HOH . D 4 HOH A 68 72 72 HOH HOH . D 4 HOH A 69 73 73 HOH HOH . D 4 HOH A 70 74 74 HOH HOH . D 4 HOH A 71 75 75 HOH HOH . D 4 HOH A 72 76 76 HOH HOH . D 4 HOH A 73 78 78 HOH HOH . D 4 HOH A 74 79 79 HOH HOH . D 4 HOH A 75 80 80 HOH HOH . D 4 HOH A 76 83 83 HOH HOH . D 4 HOH A 77 85 85 HOH HOH . D 4 HOH A 78 86 86 HOH HOH . D 4 HOH A 79 87 87 HOH HOH . D 4 HOH A 80 88 88 HOH HOH . D 4 HOH A 81 89 89 HOH HOH . D 4 HOH A 82 90 90 HOH HOH . D 4 HOH A 83 92 92 HOH HOH . D 4 HOH A 84 93 93 HOH HOH . D 4 HOH A 85 94 94 HOH HOH . D 4 HOH A 86 95 95 HOH HOH . D 4 HOH A 87 96 96 HOH HOH . D 4 HOH A 88 97 97 HOH HOH . D 4 HOH A 89 99 99 HOH HOH . D 4 HOH A 90 100 100 HOH HOH . D 4 HOH A 91 101 101 HOH HOH . D 4 HOH A 92 102 102 HOH HOH . D 4 HOH A 93 103 103 HOH HOH . D 4 HOH A 94 104 104 HOH HOH . D 4 HOH A 95 105 105 HOH HOH . D 4 HOH A 96 106 106 HOH HOH . D 4 HOH A 97 107 107 HOH HOH . D 4 HOH A 98 108 108 HOH HOH . D 4 HOH A 99 109 109 HOH HOH . D 4 HOH A 100 110 110 HOH HOH . D 4 HOH A 101 112 112 HOH HOH . D 4 HOH A 102 113 113 HOH HOH . D 4 HOH A 103 114 114 HOH HOH . D 4 HOH A 104 115 115 HOH HOH . D 4 HOH A 105 116 116 HOH HOH . D 4 HOH A 106 118 118 HOH HOH . D 4 HOH A 107 120 120 HOH HOH . D 4 HOH A 108 121 121 HOH HOH . D 4 HOH A 109 122 122 HOH HOH . D 4 HOH A 110 123 123 HOH HOH . D 4 HOH A 111 125 125 HOH HOH . D 4 HOH A 112 126 126 HOH HOH . D 4 HOH A 113 127 127 HOH HOH . D 4 HOH A 114 128 128 HOH HOH . D 4 HOH A 115 130 130 HOH HOH . D 4 HOH A 116 131 131 HOH HOH . D 4 HOH A 117 132 132 HOH HOH . D 4 HOH A 118 133 133 HOH HOH . D 4 HOH A 119 134 134 HOH HOH . D 4 HOH A 120 135 135 HOH HOH . D 4 HOH A 121 136 136 HOH HOH . D 4 HOH A 122 138 138 HOH HOH . D 4 HOH A 123 139 139 HOH HOH . D 4 HOH A 124 140 140 HOH HOH . D 4 HOH A 125 141 141 HOH HOH . D 4 HOH A 126 142 142 HOH HOH . D 4 HOH A 127 143 143 HOH HOH . D 4 HOH A 128 144 144 HOH HOH . D 4 HOH A 129 145 145 HOH HOH . D 4 HOH A 130 146 146 HOH HOH . D 4 HOH A 131 147 147 HOH HOH . D 4 HOH A 132 148 148 HOH HOH . D 4 HOH A 133 149 149 HOH HOH . D 4 HOH A 134 150 150 HOH HOH . D 4 HOH A 135 151 151 HOH HOH . D 4 HOH A 136 152 152 HOH HOH . D 4 HOH A 137 153 153 HOH HOH . D 4 HOH A 138 154 154 HOH HOH . D 4 HOH A 139 155 155 HOH HOH . D 4 HOH A 140 156 156 HOH HOH . D 4 HOH A 141 157 157 HOH HOH . D 4 HOH A 142 158 158 HOH HOH . D 4 HOH A 143 159 159 HOH HOH . D 4 HOH A 144 160 160 HOH HOH . D 4 HOH A 145 162 162 HOH HOH . D 4 HOH A 146 163 163 HOH HOH . D 4 HOH A 147 164 164 HOH HOH . D 4 HOH A 148 165 165 HOH HOH . D 4 HOH A 149 166 166 HOH HOH . D 4 HOH A 150 167 167 HOH HOH . D 4 HOH A 151 168 168 HOH HOH . D 4 HOH A 152 169 169 HOH HOH . D 4 HOH A 153 171 171 HOH HOH . D 4 HOH A 154 172 172 HOH HOH . D 4 HOH A 155 174 174 HOH HOH . D 4 HOH A 156 175 175 HOH HOH . D 4 HOH A 157 180 180 HOH HOH . D 4 HOH A 158 181 181 HOH HOH . D 4 HOH A 159 182 182 HOH HOH . D 4 HOH A 160 183 183 HOH HOH . D 4 HOH A 161 184 184 HOH HOH . D 4 HOH A 162 185 185 HOH HOH . D 4 HOH A 163 186 186 HOH HOH . D 4 HOH A 164 187 187 HOH HOH . D 4 HOH A 165 188 188 HOH HOH . D 4 HOH A 166 189 189 HOH HOH . D 4 HOH A 167 190 190 HOH HOH . D 4 HOH A 168 191 191 HOH HOH . D 4 HOH A 169 192 192 HOH HOH . D 4 HOH A 170 193 193 HOH HOH . D 4 HOH A 171 194 194 HOH HOH . D 4 HOH A 172 476 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . B 2 45.225 91.731 -4.714 1 70.31 ? C5 B7G 570 A 1 HETATM 2 O O5 B7G . . . B 2 44.51 90.509 -4.445 1 69.44 ? O5 B7G 570 A 1 HETATM 3 C C1 B7G . . . B 2 44.82 89.414 -5.339 1 65.87 ? C1 B7G 570 A 1 HETATM 4 C C2 B7G . . . B 2 44.565 89.817 -6.791 1 67.31 ? C2 B7G 570 A 1 HETATM 5 C C3 B7G . . . B 2 45.373 91.072 -7.184 1 69.87 ? C3 B7G 570 A 1 HETATM 6 C C4 B7G . . . B 2 45.148 92.226 -6.176 1 70.7 ? C4 B7G 570 A 1 HETATM 7 C C6 B7G . . . B 2 44.707 92.817 -3.797 1 68.7 ? C6 B7G 570 A 1 HETATM 8 O O1 B7G . . . B 2 43.959 88.308 -5.087 1 63.93 ? O1 B7G 570 A 1 HETATM 9 C C7 B7G . . . B 2 44.327 87.514 -3.957 1 58.05 ? C7 B7G 570 A 1 HETATM 10 C C8 B7G . . . B 2 43.237 87.503 -2.903 1 54.99 ? C8 B7G 570 A 1 HETATM 11 C C9 B7G . . . B 2 43.139 86.134 -2.242 1 52.58 ? C9 B7G 570 A 1 HETATM 12 C C10 B7G . . . B 2 43.958 86.039 -0.983 1 48.44 ? C10 B7G 570 A 1 HETATM 13 C C11 B7G . . . B 2 43.057 85.736 0.198 1 50.55 ? C11 B7G 570 A 1 HETATM 14 C C12 B7G . . . B 2 43.649 86.46 1.381 1 49.77 ? C12 B7G 570 A 1 HETATM 15 O O2 B7G . . . B 2 44.938 88.706 -7.593 1 64.15 ? O2 B7G 570 A 1 HETATM 16 O O3 B7G . . . B 2 45.084 91.467 -8.527 1 69.92 ? O3 B7G 570 A 1 HETATM 17 O O4 B7G . . . B 2 46.112 93.296 -6.28 1 71.19 ? O4 B7G 570 A 1 HETATM 18 O O6 B7G . . . B 2 45.684 92.879 -2.776 1 68.9 ? O6 B7G 570 A 1 HETATM 19 C C13 B7G . . . B 2 42.591 86.721 2.425 1 53.03 ? C13 B7G 570 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #