data_3GZI # _model_server_result.job_id 4DzSci24xq5GsgQa1w6xhg _model_server_result.datetime_utc '2024-11-13 12:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":224}' # _entry.id 3GZI # _exptl.entry_id 3GZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GZI _cell.length_a 77.83 _cell.length_b 45.836 _cell.length_c 68.694 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -45.836 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 67 A THR 66 1_555 A N MSE 68 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 68 A MSE 67 1_555 A N ILE 69 A ILE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ALA 73 A ALA 72 1_555 A N MSE 74 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C MSE 74 A MSE 73 1_555 A N PRO 75 A PRO 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale5 A C VAL 102 A VAL 101 1_555 A N MSE 103 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 103 A MSE 102 1_555 A N SER 104 A SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C LEU 112 A LEU 111 1_555 A N MSE 113 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 113 A MSE 112 1_555 A N LEU 114 A LEU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C ALA 169 A ALA 168 1_555 A N MSE 170 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 170 A MSE 169 1_555 A N MSE 171 A MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale11 A C MSE 171 A MSE 170 1_555 A N VAL 172 A VAL 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale12 A C LEU 209 A LEU 208 1_555 A N MSE 210 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 A C MSE 210 A MSE 209 1_555 A N ASP 211 A ASP 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3GZI _atom_sites.fract_transf_matrix[1][1] 0.012848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 218 1 UNL UNL . C 3 EDO A 1 219 2 EDO EDO . D 3 EDO A 1 220 3 EDO EDO . E 3 EDO A 1 221 4 EDO EDO . F 3 EDO A 1 222 5 EDO EDO . G 3 EDO A 1 223 6 EDO EDO . H 3 EDO A 1 224 7 EDO EDO . I 3 EDO A 1 225 8 EDO EDO . J 3 EDO A 1 226 9 EDO EDO . K 3 EDO A 1 227 10 EDO EDO . L 4 HOH A 1 228 11 HOH HOH . L 4 HOH A 2 229 12 HOH HOH . L 4 HOH A 3 230 13 HOH HOH . L 4 HOH A 4 231 14 HOH HOH . L 4 HOH A 5 232 15 HOH HOH . L 4 HOH A 6 233 16 HOH HOH . L 4 HOH A 7 234 17 HOH HOH . L 4 HOH A 8 235 18 HOH HOH . L 4 HOH A 9 236 19 HOH HOH . L 4 HOH A 10 237 20 HOH HOH . L 4 HOH A 11 238 21 HOH HOH . L 4 HOH A 12 239 22 HOH HOH . L 4 HOH A 13 240 23 HOH HOH . L 4 HOH A 14 241 24 HOH HOH . L 4 HOH A 15 242 25 HOH HOH . L 4 HOH A 16 243 26 HOH HOH . L 4 HOH A 17 244 27 HOH HOH . L 4 HOH A 18 245 28 HOH HOH . L 4 HOH A 19 246 29 HOH HOH . L 4 HOH A 20 247 30 HOH HOH . L 4 HOH A 21 248 31 HOH HOH . L 4 HOH A 22 249 32 HOH HOH . L 4 HOH A 23 250 33 HOH HOH . L 4 HOH A 24 251 34 HOH HOH . L 4 HOH A 25 252 35 HOH HOH . L 4 HOH A 26 253 36 HOH HOH . L 4 HOH A 27 254 37 HOH HOH . L 4 HOH A 28 255 38 HOH HOH . L 4 HOH A 29 256 39 HOH HOH . L 4 HOH A 30 257 40 HOH HOH . L 4 HOH A 31 258 41 HOH HOH . L 4 HOH A 32 259 42 HOH HOH . L 4 HOH A 33 260 43 HOH HOH . L 4 HOH A 34 261 44 HOH HOH . L 4 HOH A 35 262 45 HOH HOH . L 4 HOH A 36 263 46 HOH HOH . L 4 HOH A 37 264 47 HOH HOH . L 4 HOH A 38 265 48 HOH HOH . L 4 HOH A 39 266 49 HOH HOH . L 4 HOH A 40 267 50 HOH HOH . L 4 HOH A 41 268 51 HOH HOH . L 4 HOH A 42 269 52 HOH HOH . L 4 HOH A 43 270 53 HOH HOH . L 4 HOH A 44 271 54 HOH HOH . L 4 HOH A 45 272 55 HOH HOH . L 4 HOH A 46 273 56 HOH HOH . L 4 HOH A 47 274 57 HOH HOH . L 4 HOH A 48 275 58 HOH HOH . L 4 HOH A 49 276 59 HOH HOH . L 4 HOH A 50 277 60 HOH HOH . L 4 HOH A 51 278 61 HOH HOH . L 4 HOH A 52 279 62 HOH HOH . L 4 HOH A 53 280 63 HOH HOH . L 4 HOH A 54 281 64 HOH HOH . L 4 HOH A 55 282 65 HOH HOH . L 4 HOH A 56 283 66 HOH HOH . L 4 HOH A 57 284 67 HOH HOH . L 4 HOH A 58 285 68 HOH HOH . L 4 HOH A 59 286 69 HOH HOH . L 4 HOH A 60 287 70 HOH HOH . L 4 HOH A 61 288 71 HOH HOH . L 4 HOH A 62 289 72 HOH HOH . L 4 HOH A 63 290 73 HOH HOH . L 4 HOH A 64 291 74 HOH HOH . L 4 HOH A 65 292 75 HOH HOH . L 4 HOH A 66 293 76 HOH HOH . L 4 HOH A 67 294 77 HOH HOH . L 4 HOH A 68 295 78 HOH HOH . L 4 HOH A 69 296 79 HOH HOH . L 4 HOH A 70 297 80 HOH HOH . L 4 HOH A 71 298 81 HOH HOH . L 4 HOH A 72 299 82 HOH HOH . L 4 HOH A 73 300 83 HOH HOH . L 4 HOH A 74 301 84 HOH HOH . L 4 HOH A 75 302 85 HOH HOH . L 4 HOH A 76 303 86 HOH HOH . L 4 HOH A 77 304 87 HOH HOH . L 4 HOH A 78 305 88 HOH HOH . L 4 HOH A 79 306 89 HOH HOH . L 4 HOH A 80 307 90 HOH HOH . L 4 HOH A 81 308 91 HOH HOH . L 4 HOH A 82 309 92 HOH HOH . L 4 HOH A 83 310 93 HOH HOH . L 4 HOH A 84 311 94 HOH HOH . L 4 HOH A 85 312 95 HOH HOH . L 4 HOH A 86 313 96 HOH HOH . L 4 HOH A 87 314 97 HOH HOH . L 4 HOH A 88 315 98 HOH HOH . L 4 HOH A 89 316 99 HOH HOH . L 4 HOH A 90 317 100 HOH HOH . L 4 HOH A 91 318 101 HOH HOH . L 4 HOH A 92 319 102 HOH HOH . L 4 HOH A 93 320 103 HOH HOH . L 4 HOH A 94 321 104 HOH HOH . L 4 HOH A 95 322 105 HOH HOH . L 4 HOH A 96 323 106 HOH HOH . L 4 HOH A 97 324 107 HOH HOH . L 4 HOH A 98 325 108 HOH HOH . L 4 HOH A 99 326 109 HOH HOH . L 4 HOH A 100 327 110 HOH HOH . L 4 HOH A 101 328 111 HOH HOH . L 4 HOH A 102 329 112 HOH HOH . L 4 HOH A 103 330 113 HOH HOH . L 4 HOH A 104 331 114 HOH HOH . L 4 HOH A 105 332 115 HOH HOH . L 4 HOH A 106 333 116 HOH HOH . L 4 HOH A 107 334 117 HOH HOH . L 4 HOH A 108 335 118 HOH HOH . L 4 HOH A 109 336 119 HOH HOH . L 4 HOH A 110 337 120 HOH HOH . L 4 HOH A 111 338 121 HOH HOH . L 4 HOH A 112 339 122 HOH HOH . L 4 HOH A 113 340 123 HOH HOH . L 4 HOH A 114 341 124 HOH HOH . L 4 HOH A 115 342 125 HOH HOH . L 4 HOH A 116 343 126 HOH HOH . L 4 HOH A 117 344 127 HOH HOH . L 4 HOH A 118 345 128 HOH HOH . L 4 HOH A 119 346 129 HOH HOH . L 4 HOH A 120 347 130 HOH HOH . L 4 HOH A 121 348 131 HOH HOH . L 4 HOH A 122 349 132 HOH HOH . L 4 HOH A 123 350 133 HOH HOH . L 4 HOH A 124 351 134 HOH HOH . L 4 HOH A 125 352 135 HOH HOH . L 4 HOH A 126 353 136 HOH HOH . L 4 HOH A 127 354 137 HOH HOH . L 4 HOH A 128 355 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 22.741 -23.868 62.747 1 50.29 ? C1 EDO 224 A 1 HETATM 2 O O1 EDO . . . H 3 23.65 -24.522 61.841 1 59.58 ? O1 EDO 224 A 1 HETATM 3 C C2 EDO . . . H 3 22.999 -24.279 64.195 1 57.62 ? C2 EDO 224 A 1 HETATM 4 O O2 EDO . . . H 3 22.072 -25.282 64.708 1 50.02 ? O2 EDO 224 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #