data_3GZJ # _model_server_result.job_id mgyVmFnjpeSIQRQ8sk9P9Q _model_server_result.datetime_utc '2024-11-23 01:10:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 3GZJ # _exptl.entry_id 3GZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 16-epi-Vellosimine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.44 _cell.angle_gamma 90 _cell.entry_id 3GZJ _cell.length_a 171.21 _cell.length_b 44.61 _cell.length_c 180.41 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,J 1 1 B,G,K 2 1 C,H,L 3 1 D,I,M 4 1 E,N 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C19 H20 N2 O' _chem_comp.formula_weight 292.375 _chem_comp.id EVS _chem_comp.mon_nstd_flag . _chem_comp.name 16-epi-Vellosimine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAE EVS sing 83 n n CAE CAP EVS doub 84 n n CAP CAK EVS sing 85 n n CAP CAV EVS sing 86 n n CAK NAY EVS sing 87 e n NAY CAX EVS sing 88 n n NAY CAW EVS sing 89 n n CAX CAL EVS sing 90 n n CAX CAZ EVS sing 91 n n CAL CAR EVS sing 92 n n CAR CAU EVS sing 93 n y CAR CAS EVS doub 94 n y CAU CAJ EVS doub 95 n y CAU CAT EVS sing 96 n y CAJ CAH EVS sing 97 n y CAH CAG EVS doub 98 n y CAG CAI EVS sing 99 n y CAI CAT EVS doub 100 n y CAT NAN EVS sing 101 n y NAN CAS EVS sing 102 n y CAS CAW EVS sing 103 n n CAW CAM EVS sing 104 n n CAM CAV EVS sing 105 n n CAV CAZ EVS sing 106 n n CAZ CAF EVS sing 107 n n CAF OAC EVS doub 108 n n CAA HAA EVS sing 109 n n CAA HAAA EVS sing 110 n n CAA HAAB EVS sing 111 n n CAE HAE EVS sing 112 n n CAK HAK EVS sing 113 n n CAK HAKA EVS sing 114 n n CAX HAX EVS sing 115 n n CAL HAL EVS sing 116 n n CAL HALA EVS sing 117 n n CAJ HAJ EVS sing 118 n n CAH HAH EVS sing 119 n n CAG HAG EVS sing 120 n n CAI HAI EVS sing 121 n n NAN HNAN EVS sing 122 n n CAW HAW EVS sing 123 n n CAM HAM EVS sing 124 n n CAM HAMA EVS sing 125 n n CAV HAV EVS sing 126 n n CAZ HAZ EVS sing 127 n n CAF HAF EVS sing 128 n n # _atom_sites.entry_id 3GZJ _atom_sites.fract_transf_matrix[1][1] 0.005841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EVS A 1 1000 1000 EVS EV1 . G 2 EVS B 1 1000 1000 EVS EV1 . H 2 EVS C 1 1000 1000 EVS EV1 . I 2 EVS D 1 1000 1000 EVS EV1 . J 3 HOH A 1 1 1 HOH HOH . J 3 HOH A 2 2 2 HOH HOH . J 3 HOH A 3 3 3 HOH HOH . J 3 HOH A 4 4 4 HOH HOH . J 3 HOH A 5 5 5 HOH HOH . J 3 HOH A 6 6 6 HOH HOH . J 3 HOH A 7 265 7 HOH HOH . J 3 HOH A 8 266 266 HOH HOH . J 3 HOH A 9 267 9 HOH HOH . J 3 HOH A 10 268 11 HOH HOH . J 3 HOH A 11 269 12 HOH HOH . J 3 HOH A 12 270 13 HOH HOH . J 3 HOH A 13 271 14 HOH HOH . J 3 HOH A 14 272 15 HOH HOH . J 3 HOH A 15 273 16 HOH HOH . J 3 HOH A 16 274 17 HOH HOH . J 3 HOH A 17 275 18 HOH HOH . J 3 HOH A 18 276 19 HOH HOH . J 3 HOH A 19 277 20 HOH HOH . J 3 HOH A 20 278 22 HOH HOH . J 3 HOH A 21 279 23 HOH HOH . J 3 HOH A 22 280 24 HOH HOH . J 3 HOH A 23 281 25 HOH HOH . J 3 HOH A 24 282 26 HOH HOH . J 3 HOH A 25 283 27 HOH HOH . J 3 HOH A 26 284 28 HOH HOH . J 3 HOH A 27 285 29 HOH HOH . J 3 HOH A 28 286 30 HOH HOH . J 3 HOH A 29 287 31 HOH HOH . J 3 HOH A 30 288 32 HOH HOH . J 3 HOH A 31 289 33 HOH HOH . J 3 HOH A 32 290 35 HOH HOH . J 3 HOH A 33 291 36 HOH HOH . J 3 HOH A 34 292 37 HOH HOH . J 3 HOH A 35 293 38 HOH HOH . J 3 HOH A 36 294 64 HOH HOH . J 3 HOH A 37 295 152 HOH HOH . J 3 HOH A 38 296 296 HOH HOH . J 3 HOH A 39 297 167 HOH HOH . J 3 HOH A 40 298 169 HOH HOH . J 3 HOH A 41 299 175 HOH HOH . J 3 HOH A 42 300 300 HOH HOH . J 3 HOH A 43 301 301 HOH HOH . J 3 HOH A 44 302 302 HOH HOH . J 3 HOH A 45 303 178 HOH HOH . J 3 HOH A 46 304 183 HOH HOH . J 3 HOH A 47 305 184 HOH HOH . J 3 HOH A 48 306 191 HOH HOH . J 3 HOH A 49 307 196 HOH HOH . J 3 HOH A 50 308 209 HOH HOH . J 3 HOH A 51 309 215 HOH HOH . J 3 HOH A 52 310 218 HOH HOH . J 3 HOH A 53 311 247 HOH HOH . J 3 HOH A 54 312 249 HOH HOH . J 3 HOH A 55 313 259 HOH HOH . J 3 HOH A 56 314 262 HOH HOH . K 3 HOH B 1 265 10 HOH HOH . K 3 HOH B 2 266 39 HOH HOH . K 3 HOH B 3 267 40 HOH HOH . K 3 HOH B 4 268 41 HOH HOH . K 3 HOH B 5 269 269 HOH HOH . K 3 HOH B 6 270 42 HOH HOH . K 3 HOH B 7 271 43 HOH HOH . K 3 HOH B 8 272 44 HOH HOH . K 3 HOH B 9 273 45 HOH HOH . K 3 HOH B 10 274 46 HOH HOH . K 3 HOH B 11 275 47 HOH HOH . K 3 HOH B 12 276 48 HOH HOH . K 3 HOH B 13 277 49 HOH HOH . K 3 HOH B 14 278 50 HOH HOH . K 3 HOH B 15 279 51 HOH HOH . K 3 HOH B 16 280 52 HOH HOH . K 3 HOH B 17 281 53 HOH HOH . K 3 HOH B 18 282 54 HOH HOH . K 3 HOH B 19 283 55 HOH HOH . K 3 HOH B 20 284 56 HOH HOH . K 3 HOH B 21 285 57 HOH HOH . K 3 HOH B 22 286 58 HOH HOH . K 3 HOH B 23 287 59 HOH HOH . K 3 HOH B 24 288 60 HOH HOH . K 3 HOH B 25 289 61 HOH HOH . K 3 HOH B 26 290 62 HOH HOH . K 3 HOH B 27 291 63 HOH HOH . K 3 HOH B 28 292 65 HOH HOH . K 3 HOH B 29 293 66 HOH HOH . K 3 HOH B 30 294 67 HOH HOH . K 3 HOH B 31 295 68 HOH HOH . K 3 HOH B 32 296 69 HOH HOH . K 3 HOH B 33 297 70 HOH HOH . K 3 HOH B 34 298 71 HOH HOH . K 3 HOH B 35 299 72 HOH HOH . K 3 HOH B 36 300 73 HOH HOH . K 3 HOH B 37 301 74 HOH HOH . K 3 HOH B 38 302 75 HOH HOH . K 3 HOH B 39 303 303 HOH HOH . K 3 HOH B 40 304 153 HOH HOH . K 3 HOH B 41 305 168 HOH HOH . K 3 HOH B 42 306 190 HOH HOH . K 3 HOH B 43 307 195 HOH HOH . K 3 HOH B 44 308 201 HOH HOH . K 3 HOH B 45 309 211 HOH HOH . K 3 HOH B 46 310 214 HOH HOH . K 3 HOH B 47 311 231 HOH HOH . K 3 HOH B 48 312 234 HOH HOH . K 3 HOH B 49 313 235 HOH HOH . K 3 HOH B 50 314 239 HOH HOH . K 3 HOH B 51 315 248 HOH HOH . K 3 HOH B 52 316 255 HOH HOH . L 3 HOH C 1 265 8 HOH HOH . L 3 HOH C 2 266 34 HOH HOH . L 3 HOH C 3 267 76 HOH HOH . L 3 HOH C 4 268 77 HOH HOH . L 3 HOH C 5 269 78 HOH HOH . L 3 HOH C 6 270 79 HOH HOH . L 3 HOH C 7 271 80 HOH HOH . L 3 HOH C 8 272 81 HOH HOH . L 3 HOH C 9 273 82 HOH HOH . L 3 HOH C 10 274 274 HOH HOH . L 3 HOH C 11 275 83 HOH HOH . L 3 HOH C 12 276 276 HOH HOH . L 3 HOH C 13 277 84 HOH HOH . L 3 HOH C 14 278 85 HOH HOH . L 3 HOH C 15 279 86 HOH HOH . L 3 HOH C 16 280 87 HOH HOH . L 3 HOH C 17 281 88 HOH HOH . L 3 HOH C 18 282 89 HOH HOH . L 3 HOH C 19 283 90 HOH HOH . L 3 HOH C 20 284 91 HOH HOH . L 3 HOH C 21 285 92 HOH HOH . L 3 HOH C 22 286 93 HOH HOH . L 3 HOH C 23 287 94 HOH HOH . L 3 HOH C 24 288 95 HOH HOH . L 3 HOH C 25 289 96 HOH HOH . L 3 HOH C 26 290 97 HOH HOH . L 3 HOH C 27 291 98 HOH HOH . L 3 HOH C 28 292 99 HOH HOH . L 3 HOH C 29 293 100 HOH HOH . L 3 HOH C 30 294 101 HOH HOH . L 3 HOH C 31 295 102 HOH HOH . L 3 HOH C 32 296 103 HOH HOH . L 3 HOH C 33 297 297 HOH HOH . L 3 HOH C 34 298 104 HOH HOH . L 3 HOH C 35 299 106 HOH HOH . L 3 HOH C 36 300 107 HOH HOH . L 3 HOH C 37 302 111 HOH HOH . L 3 HOH C 38 303 112 HOH HOH . L 3 HOH C 39 304 113 HOH HOH . L 3 HOH C 40 305 114 HOH HOH . L 3 HOH C 41 306 115 HOH HOH . L 3 HOH C 42 307 116 HOH HOH . L 3 HOH C 43 308 158 HOH HOH . L 3 HOH C 44 309 188 HOH HOH . L 3 HOH C 45 310 189 HOH HOH . L 3 HOH C 46 311 193 HOH HOH . L 3 HOH C 47 312 205 HOH HOH . L 3 HOH C 48 313 208 HOH HOH . L 3 HOH C 49 314 219 HOH HOH . L 3 HOH C 50 315 221 HOH HOH . L 3 HOH C 51 316 225 HOH HOH . L 3 HOH C 52 317 232 HOH HOH . L 3 HOH C 53 318 233 HOH HOH . L 3 HOH C 54 319 236 HOH HOH . L 3 HOH C 55 320 241 HOH HOH . L 3 HOH C 56 321 256 HOH HOH . M 3 HOH D 1 265 21 HOH HOH . M 3 HOH D 2 266 117 HOH HOH . M 3 HOH D 3 267 267 HOH HOH . M 3 HOH D 4 268 118 HOH HOH . M 3 HOH D 5 269 119 HOH HOH . M 3 HOH D 6 270 120 HOH HOH . M 3 HOH D 7 271 121 HOH HOH . M 3 HOH D 8 272 122 HOH HOH . M 3 HOH D 9 273 123 HOH HOH . M 3 HOH D 10 274 124 HOH HOH . M 3 HOH D 11 275 125 HOH HOH . M 3 HOH D 12 276 126 HOH HOH . M 3 HOH D 13 277 127 HOH HOH . M 3 HOH D 14 278 128 HOH HOH . M 3 HOH D 15 279 129 HOH HOH . M 3 HOH D 16 280 130 HOH HOH . M 3 HOH D 17 281 131 HOH HOH . M 3 HOH D 18 282 132 HOH HOH . M 3 HOH D 19 283 133 HOH HOH . M 3 HOH D 20 284 134 HOH HOH . M 3 HOH D 21 285 135 HOH HOH . M 3 HOH D 22 286 136 HOH HOH . M 3 HOH D 23 287 137 HOH HOH . M 3 HOH D 24 288 138 HOH HOH . M 3 HOH D 25 289 139 HOH HOH . M 3 HOH D 26 290 140 HOH HOH . M 3 HOH D 27 291 141 HOH HOH . M 3 HOH D 28 292 142 HOH HOH . M 3 HOH D 29 293 143 HOH HOH . M 3 HOH D 30 294 144 HOH HOH . M 3 HOH D 31 295 145 HOH HOH . M 3 HOH D 32 296 146 HOH HOH . M 3 HOH D 33 297 147 HOH HOH . M 3 HOH D 34 298 298 HOH HOH . M 3 HOH D 35 299 299 HOH HOH . M 3 HOH D 36 300 148 HOH HOH . M 3 HOH D 37 301 110 HOH HOH . M 3 HOH D 38 302 150 HOH HOH . M 3 HOH D 39 303 151 HOH HOH . M 3 HOH D 40 304 304 HOH HOH . M 3 HOH D 41 305 172 HOH HOH . M 3 HOH D 42 306 174 HOH HOH . M 3 HOH D 43 307 180 HOH HOH . M 3 HOH D 44 308 182 HOH HOH . M 3 HOH D 45 309 186 HOH HOH . M 3 HOH D 46 310 202 HOH HOH . M 3 HOH D 47 311 204 HOH HOH . M 3 HOH D 48 312 207 HOH HOH . M 3 HOH D 49 313 210 HOH HOH . M 3 HOH D 50 314 212 HOH HOH . M 3 HOH D 51 315 223 HOH HOH . M 3 HOH D 52 316 230 HOH HOH . M 3 HOH D 53 317 237 HOH HOH . M 3 HOH D 54 318 246 HOH HOH . M 3 HOH D 55 319 250 HOH HOH . M 3 HOH D 56 320 252 HOH HOH . M 3 HOH D 57 321 263 HOH HOH . M 3 HOH D 58 322 264 HOH HOH . M 3 HOH D 59 323 149 HOH HOH . N 3 HOH E 1 265 265 HOH HOH . N 3 HOH E 2 266 105 HOH HOH . N 3 HOH E 3 267 108 HOH HOH . N 3 HOH E 4 268 268 HOH HOH . N 3 HOH E 5 269 109 HOH HOH . N 3 HOH E 6 270 154 HOH HOH . N 3 HOH E 7 271 156 HOH HOH . N 3 HOH E 8 272 157 HOH HOH . N 3 HOH E 9 273 159 HOH HOH . N 3 HOH E 10 274 160 HOH HOH . N 3 HOH E 11 275 275 HOH HOH . N 3 HOH E 12 276 161 HOH HOH . N 3 HOH E 13 277 162 HOH HOH . N 3 HOH E 14 278 163 HOH HOH . N 3 HOH E 15 279 164 HOH HOH . N 3 HOH E 16 280 165 HOH HOH . N 3 HOH E 17 281 170 HOH HOH . N 3 HOH E 18 282 171 HOH HOH . N 3 HOH E 19 283 216 HOH HOH . N 3 HOH E 20 284 251 HOH HOH . N 3 HOH E 21 285 253 HOH HOH . N 3 HOH E 22 286 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA EVS . . . F 2 -29.186 -2.617 52.211 1 37.07 ? CAA EVS 1000 A 1 HETATM 2 C CAE EVS . . . F 2 -27.958 -2.083 52.962 1 38.7 ? CAE EVS 1000 A 1 HETATM 3 C CAP EVS . . . F 2 -26.707 -2.427 52.419 1 38.02 ? CAP EVS 1000 A 1 HETATM 4 C CAK EVS . . . F 2 -25.471 -1.971 52.99 1 37.18 ? CAK EVS 1000 A 1 HETATM 5 N NAY EVS . . . F 2 -24.341 -2.144 52.014 1 35.18 ? NAY EVS 1000 A 1 HETATM 6 C CAX EVS . . . F 2 -24.732 -1.444 50.753 1 37.26 ? CAX EVS 1000 A 1 HETATM 7 C CAL EVS . . . F 2 -23.581 -1.484 49.667 1 38.23 ? CAL EVS 1000 A 1 HETATM 8 C CAR EVS . . . F 2 -22.975 -2.784 49.612 1 38.63 ? CAR EVS 1000 A 1 HETATM 9 C CAU EVS . . . F 2 -22.106 -3.241 48.721 1 38.66 ? CAU EVS 1000 A 1 HETATM 10 C CAJ EVS . . . F 2 -21.519 -2.643 47.662 1 40.27 ? CAJ EVS 1000 A 1 HETATM 11 C CAH EVS . . . F 2 -20.623 -3.33 46.825 1 39.33 ? CAH EVS 1000 A 1 HETATM 12 C CAG EVS . . . F 2 -20.353 -4.661 47.149 1 38.52 ? CAG EVS 1000 A 1 HETATM 13 C CAI EVS . . . F 2 -21.004 -5.212 48.258 1 40.4 ? CAI EVS 1000 A 1 HETATM 14 C CAT EVS . . . F 2 -21.867 -4.512 49.015 1 39.7 ? CAT EVS 1000 A 1 HETATM 15 N NAN EVS . . . F 2 -22.567 -4.838 50.109 1 38.87 ? NAN EVS 1000 A 1 HETATM 16 C CAS EVS . . . F 2 -23.272 -3.781 50.488 1 37.96 ? CAS EVS 1000 A 1 HETATM 17 C CAW EVS . . . F 2 -24.184 -3.599 51.612 1 38.77 ? CAW EVS 1000 A 1 HETATM 18 C CAM EVS . . . F 2 -25.561 -4.256 51.34 1 36.53 ? CAM EVS 1000 A 1 HETATM 19 C CAV EVS . . . F 2 -26.619 -3.127 51.223 1 35.61 ? CAV EVS 1000 A 1 HETATM 20 C CAZ EVS . . . F 2 -26.197 -1.928 50.354 1 34.88 ? CAZ EVS 1000 A 1 HETATM 21 C CAF EVS . . . F 2 -26.75 -1.927 48.924 1 37.92 ? CAF EVS 1000 A 1 HETATM 22 O OAC EVS . . . F 2 -28.177 -2.254 48.979 1 36.09 ? OAC EVS 1000 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #