data_3GZL # _model_server_result.job_id H8jgLAK0m9CqUI57EottMQ _model_server_result.datetime_utc '2024-12-22 06:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gzl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 3GZL # _exptl.entry_id 3GZL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GZL _cell.length_a 48.675 _cell.length_b 48.675 _cell.length_c 97.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -48.675 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB SER 39 A SER 39 1_555 B O23 PNS . A PNS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale2 B S44 PNS . A PNS 100 1_555 B S44 PNS . A PNS 100 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 198 n n O23 HOP1 PNS sing 199 n n P24 O25 PNS sing 200 n n P24 O26 PNS doub 201 n n P24 O27 PNS sing 202 n n O25 HOP2 PNS sing 203 n n O27 C28 PNS sing 204 n n C28 C29 PNS sing 205 n n C28 H282 PNS sing 206 n n C28 H281 PNS sing 207 n n C29 C30 PNS sing 208 n n C29 C31 PNS sing 209 n n C29 C32 PNS sing 210 n n C30 H303 PNS sing 211 n n C30 H302 PNS sing 212 n n C30 H301 PNS sing 213 n n C31 H313 PNS sing 214 n n C31 H312 PNS sing 215 n n C31 H311 PNS sing 216 n n C32 O33 PNS sing 217 n n C32 C34 PNS sing 218 n n C32 H32 PNS sing 219 n n O33 H33 PNS sing 220 n n C34 O35 PNS doub 221 n n C34 N36 PNS sing 222 n n N36 C37 PNS sing 223 n n N36 H36 PNS sing 224 n n C37 C38 PNS sing 225 n n C37 H372 PNS sing 226 n n C37 H371 PNS sing 227 n n C38 C39 PNS sing 228 n n C38 H382 PNS sing 229 n n C38 H381 PNS sing 230 n n C39 O40 PNS doub 231 n n C39 N41 PNS sing 232 n n N41 C42 PNS sing 233 n n N41 H41 PNS sing 234 n n C42 C43 PNS sing 235 n n C42 H422 PNS sing 236 n n C42 H421 PNS sing 237 n n C43 S44 PNS sing 238 n n C43 H431 PNS sing 239 n n C43 H432 PNS sing 240 n n S44 H44 PNS sing 241 n n # _atom_sites.entry_id 3GZL _atom_sites.fract_transf_matrix[1][1] 0.020544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PNS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 100 _pdbx_nonpoly_scheme.auth_seq_num 100 _pdbx_nonpoly_scheme.pdb_mon_id PNS _pdbx_nonpoly_scheme.auth_mon_id PNS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . B 2 6.306 -26.237 3.982 1 69.65 ? O23 PNS 100 A 1 HETATM 2 P P24 PNS . . . B 2 5.074 -26.433 4.998 1 70.91 ? P24 PNS 100 A 1 HETATM 3 O O25 PNS . . . B 2 5.505 -26.447 6.446 1 70.87 ? O25 PNS 100 A 1 HETATM 4 O O26 PNS . . . B 2 4.095 -27.515 4.604 1 70.65 ? O26 PNS 100 A 1 HETATM 5 O O27 PNS . . . B 2 4.196 -25.09 4.874 1 71.33 ? O27 PNS 100 A 1 HETATM 6 C C28 PNS . . . B 2 3.488 -24.76 3.677 1 72.3 ? C28 PNS 100 A 1 HETATM 7 C C29 PNS . . . B 2 2.555 -23.578 3.917 1 72.76 ? C29 PNS 100 A 1 HETATM 8 C C30 PNS . . . B 2 1.73 -23.865 5.164 1 72.74 ? C30 PNS 100 A 1 HETATM 9 C C31 PNS . . . B 2 1.648 -23.414 2.705 1 72.76 ? C31 PNS 100 A 1 HETATM 10 C C32 PNS . . . B 2 3.381 -22.298 4.131 1 73.08 ? C32 PNS 100 A 1 HETATM 11 O O33 PNS . . . B 2 4.276 -22.088 3.023 1 72.96 ? O33 PNS 100 A 1 HETATM 12 C C34 PNS . . . B 2 2.513 -21.079 4.33 1 73.43 ? C34 PNS 100 A 1 HETATM 13 O O35 PNS . . . B 2 1.508 -21.113 5.03 1 73.75 ? O35 PNS 100 A 1 HETATM 14 N N36 PNS . . . B 2 2.907 -19.972 3.707 1 73.69 ? N36 PNS 100 A 1 HETATM 15 C C37 PNS . . . B 2 2.158 -18.734 3.803 1 73.93 ? C37 PNS 100 A 1 HETATM 16 C C38 PNS . . . B 2 0.966 -18.776 2.854 1 74.1 ? C38 PNS 100 A 1 HETATM 17 C C39 PNS . . . B 2 1.333 -19.576 1.623 1 74.27 ? C39 PNS 100 A 1 HETATM 18 O O40 PNS . . . B 2 2.477 -19.554 1.189 1 74.24 ? O40 PNS 100 A 1 HETATM 19 N N41 PNS . . . B 2 0.355 -20.288 1.067 1 74.33 ? N41 PNS 100 A 1 HETATM 20 C C42 PNS . . . B 2 0.582 -21.088 -0.12 1 74.34 ? C42 PNS 100 A 1 HETATM 21 C C43 PNS . . . B 2 -0.282 -22.338 -0.169 1 74.45 ? C43 PNS 100 A 1 HETATM 22 S S44 PNS . . . B 2 0.348 -23.386 -1.501 0.5 74.43 ? S44 PNS 100 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #