data_3GZM
#
_model_server_result.job_id            U34YXJxNgwpNQDXa5u0-kA 
_model_server_result.datetime_utc      '2024-10-19 10:25:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":300}' 
#
_entry.id    3GZM 
#
_exptl.entry_id    3GZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GZM 
_cell.length_a            54.177 
_cell.length_b            54.177 
_cell.length_c            101.629 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,T 1 1 
B,J,K,L,M,N,O,P,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CB SER 39 A SER 39 1_555 C O23 PNS . A PNS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale2 B CB SER 39 B SER 39 1_555 J O23 PNS . B PNS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 186 n n 
C1 C3 MLI sing 187 n n 
C1 H11 MLI sing 188 n n 
C1 H12 MLI sing 189 n n 
C2 O6 MLI doub 190 n n 
C2 O7 MLI sing 191 n n 
C3 O8 MLI doub 192 n n 
C3 O9 MLI sing 193 n n 
#
_atom_sites.entry_id                     3GZM 
_atom_sites.fract_transf_matrix[1][1]    0.018458 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PNS A 1 100 100 PNS PNS . 
D 3 BME A 1 200 200 BME BME . 
E 4 MLI A 1 304 304 MLI MLI . 
F 4 MLI A 1 307 307 MLI MLI . 
G 4 MLI A 1 308 308 MLI MLI . 
H 4 MLI A 1 310 310 MLI MLI . 
I 4 MLI A 1 313 313 MLI MLI . 
J 2 PNS B 1 100 100 PNS PNS . 
K 4 MLI B 1 300 300 MLI MLI . 
L 4 MLI B 1 301 301 MLI MLI . 
M 4 MLI B 1 302 302 MLI MLI . 
N 4 MLI B 1 303 303 MLI MLI . 
O 4 MLI B 1 305 305 MLI MLI . 
P 4 MLI B 1 306 306 MLI MLI . 
Q 4 MLI B 1 309 309 MLI MLI . 
R 4 MLI B 1 311 311 MLI MLI . 
S 4 MLI B 1 312 312 MLI MLI . 
T 5 HOH A 1 82 2 HOH HOH . 
T 5 HOH A 2 83 8 HOH HOH . 
T 5 HOH A 3 84 9 HOH HOH . 
T 5 HOH A 4 85 12 HOH HOH . 
T 5 HOH A 5 86 15 HOH HOH . 
T 5 HOH A 6 87 16 HOH HOH . 
T 5 HOH A 7 88 17 HOH HOH . 
T 5 HOH A 8 89 89 HOH HOH . 
T 5 HOH A 9 90 90 HOH HOH . 
T 5 HOH A 10 91 35 HOH HOH . 
T 5 HOH A 11 92 36 HOH HOH . 
T 5 HOH A 12 93 37 HOH HOH . 
T 5 HOH A 13 94 38 HOH HOH . 
T 5 HOH A 14 95 46 HOH HOH . 
T 5 HOH A 15 96 47 HOH HOH . 
T 5 HOH A 16 97 48 HOH HOH . 
T 5 HOH A 17 98 50 HOH HOH . 
T 5 HOH A 18 99 68 HOH HOH . 
T 5 HOH A 19 101 74 HOH HOH . 
T 5 HOH A 20 102 77 HOH HOH . 
T 5 HOH A 21 103 81 HOH HOH . 
T 5 HOH A 22 104 104 HOH HOH . 
T 5 HOH A 23 114 114 HOH HOH . 
T 5 HOH A 24 117 117 HOH HOH . 
T 5 HOH A 25 119 119 HOH HOH . 
T 5 HOH A 26 126 126 HOH HOH . 
T 5 HOH A 27 127 127 HOH HOH . 
T 5 HOH A 28 128 128 HOH HOH . 
T 5 HOH A 29 132 132 HOH HOH . 
T 5 HOH A 30 134 134 HOH HOH . 
T 5 HOH A 31 135 135 HOH HOH . 
T 5 HOH A 32 136 136 HOH HOH . 
T 5 HOH A 33 138 138 HOH HOH . 
T 5 HOH A 34 142 142 HOH HOH . 
T 5 HOH A 35 143 143 HOH HOH . 
U 5 HOH B 1 82 5 HOH HOH . 
U 5 HOH B 2 83 6 HOH HOH . 
U 5 HOH B 3 84 11 HOH HOH . 
U 5 HOH B 4 85 19 HOH HOH . 
U 5 HOH B 5 86 20 HOH HOH . 
U 5 HOH B 6 87 21 HOH HOH . 
U 5 HOH B 7 88 22 HOH HOH . 
U 5 HOH B 8 89 24 HOH HOH . 
U 5 HOH B 9 90 25 HOH HOH . 
U 5 HOH B 10 91 26 HOH HOH . 
U 5 HOH B 11 92 27 HOH HOH . 
U 5 HOH B 12 93 28 HOH HOH . 
U 5 HOH B 13 94 33 HOH HOH . 
U 5 HOH B 14 95 40 HOH HOH . 
U 5 HOH B 15 96 96 HOH HOH . 
U 5 HOH B 16 97 42 HOH HOH . 
U 5 HOH B 17 98 52 HOH HOH . 
U 5 HOH B 18 99 99 HOH HOH . 
U 5 HOH B 19 101 54 HOH HOH . 
U 5 HOH B 20 102 55 HOH HOH . 
U 5 HOH B 21 103 56 HOH HOH . 
U 5 HOH B 22 104 57 HOH HOH . 
U 5 HOH B 23 105 58 HOH HOH . 
U 5 HOH B 24 106 66 HOH HOH . 
U 5 HOH B 25 107 67 HOH HOH . 
U 5 HOH B 26 108 73 HOH HOH . 
U 5 HOH B 27 109 109 HOH HOH . 
U 5 HOH B 28 110 75 HOH HOH . 
U 5 HOH B 29 111 76 HOH HOH . 
U 5 HOH B 30 121 121 HOH HOH . 
U 5 HOH B 31 129 129 HOH HOH . 
U 5 HOH B 32 130 130 HOH HOH . 
U 5 HOH B 33 131 131 HOH HOH . 
U 5 HOH B 34 133 133 HOH HOH . 
U 5 HOH B 35 137 137 HOH HOH . 
U 5 HOH B 36 139 139 HOH HOH . 
U 5 HOH B 37 140 140 HOH HOH . 
U 5 HOH B 38 141 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . K 4 -0.357 16.956 -4.877 1 38.98 ? C1 MLI 300 B 1 
HETATM 2 C C2 MLI . . . K 4 -0.142 16.624 -3.402 1 40.36 ? C2 MLI 300 B 1 
HETATM 3 C C3 MLI . . . K 4 -0.926 15.787 -5.655 1 35.68 ? C3 MLI 300 B 1 
HETATM 4 O O6 MLI . . . K 4 -1.043 16.769 -2.504 1 34.06 ? O6 MLI 300 B 1 
HETATM 5 O O7 MLI . . . K 4 1.005 16.208 -3.147 1 44.59 ? O7 MLI 300 B 1 
HETATM 6 O O8 MLI . . . K 4 -2.11 15.56 -5.497 1 39.04 ? O8 MLI 300 B 1 
HETATM 7 O O9 MLI . . . K 4 -0.236 15.06 -6.41 1 36.35 ? O9 MLI 300 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#