data_3GZN # _model_server_result.job_id zJOuY3rm5GJwnAmb0odi7w _model_server_result.datetime_utc '2024-11-30 07:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":464}' # _entry.id 3GZN # _exptl.entry_id 3GZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.519 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1S,2S,4R)-4-{4-[(1S)-2,3-dihydro-1H-inden-1-ylamino]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}-2-hydroxycyclopentyl]methyl sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GZN _cell.length_a 135.03 _cell.length_b 228.715 _cell.length_c 229.307 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I 1 1 C,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C GLY 82 I GLY 76 1_555 I N31 B39 . I B39 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? covale ? covale2 F C GLY 82 J GLY 76 1_555 J N31 B39 . J B39 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? metalc ? metalc1 B SG CYS 220 B CYS 220 1_555 G ZN ZN . B ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc2 B SG CYS 223 B CYS 223 1_555 G ZN ZN . B ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 B SG CYS 364 B CYS 364 1_555 G ZN ZN . B ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 B SG CYS 367 B CYS 367 1_555 G ZN ZN . B ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 D SG CYS 220 D CYS 220 1_555 H ZN ZN . D ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 D SG CYS 223 D CYS 223 1_555 H ZN ZN . D ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 D SG CYS 364 D CYS 364 1_555 H ZN ZN . D ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D SG CYS 367 D CYS 367 1_555 H ZN ZN . D ZN 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C21 H25 N5 O4 S' _chem_comp.formula_weight 443.519 _chem_comp.id B39 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1S,2S,4R)-4-{4-[(1S)-2,3-dihydro-1H-inden-1-ylamino]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}-2-hydroxycyclopentyl]methyl sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 B39 sing 70 n n C4 N7 B39 sing 71 n n C4 C3 B39 sing 72 n n C5 C6 B39 sing 73 n n C6 C8 B39 sing 74 n n C6 C2 B39 sing 75 n n C8 O27 B39 sing 76 n n C10 C12 B39 sing 77 n y C10 C11 B39 doub 78 n y C13 N14 B39 doub 79 n y C13 C12 B39 sing 80 n y C13 N7 B39 sing 81 n y C15 N16 B39 doub 82 n y C15 N14 B39 sing 83 n y C17 N18 B39 sing 84 n n C17 N16 B39 sing 85 n y C17 C12 B39 doub 86 n y C20 C19 B39 sing 87 n n C20 C1 B39 sing 88 n n C21 C22 B39 doub 89 n y C21 C26 B39 sing 90 n y C21 C1 B39 sing 91 n n C22 C19 B39 sing 92 n n C22 C23 B39 sing 93 n y C24 C23 B39 doub 94 n y C24 C25 B39 sing 95 n y C26 C25 B39 doub 96 n y C1 N18 B39 sing 97 n n C11 N7 B39 sing 98 n y C3 C2 B39 sing 99 n n C2 O9 B39 sing 100 n n O27 S28 B39 sing 101 n n S28 O29 B39 doub 102 n n S28 O30 B39 doub 103 n n S28 N31 B39 sing 104 n n C4 H4 B39 sing 105 n n C5 H5 B39 sing 106 n n C5 H5A B39 sing 107 n n C6 H6 B39 sing 108 n n C8 H8 B39 sing 109 n n C8 H8A B39 sing 110 n n C10 H10 B39 sing 111 n n C15 H15 B39 sing 112 n n C20 H20 B39 sing 113 n n C20 H20A B39 sing 114 n n C24 H24 B39 sing 115 n n C26 H26 B39 sing 116 n n C19 H19 B39 sing 117 n n C19 H19A B39 sing 118 n n C23 H23 B39 sing 119 n n C25 H25 B39 sing 120 n n C1 H1 B39 sing 121 n n N18 HN18 B39 sing 122 n n C11 H11 B39 sing 123 n n C3 H3 B39 sing 124 n n C3 H3A B39 sing 125 n n C2 H2 B39 sing 126 n n O9 HO9 B39 sing 127 n n N31 HN31 B39 sing 128 n n N31 HN3A B39 sing 129 n n # _atom_sites.entry_id 3GZN _atom_sites.fract_transf_matrix[1][1] 0.007406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN B 1 465 465 ZN ZN . H 4 ZN D 1 465 465 ZN ZN . I 5 B39 I 1 464 464 B39 B39 . J 5 B39 J 1 464 464 B39 B39 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B39 . . . J 5 8.627 89.047 41.044 1 54.78 ? C4 B39 464 J 1 HETATM 2 C C5 B39 . . . J 5 10.155 89.322 40.98 1 53.85 ? C5 B39 464 J 1 HETATM 3 C C6 B39 . . . J 5 10.333 90.701 41.622 1 53.22 ? C6 B39 464 J 1 HETATM 4 C C8 B39 . . . J 5 11.597 91.389 41.086 1 51.93 ? C8 B39 464 J 1 HETATM 5 C C10 B39 . . . J 5 8.096 87.112 44.023 1 55.94 ? C10 B39 464 J 1 HETATM 6 C C13 B39 . . . J 5 7.409 87.062 41.959 1 55.73 ? C13 B39 464 J 1 HETATM 7 C C15 B39 . . . J 5 5.934 85.494 41.053 1 56.64 ? C15 B39 464 J 1 HETATM 8 C C17 B39 . . . J 5 6.484 85.299 43.301 1 56.36 ? C17 B39 464 J 1 HETATM 9 C C20 B39 . . . J 5 5.803 85.98 46.46 1 60.56 ? C20 B39 464 J 1 HETATM 10 C C21 B39 . . . J 5 6.675 83.777 46.728 1 60.39 ? C21 B39 464 J 1 HETATM 11 C C22 B39 . . . J 5 6.323 84.245 48.006 1 60.91 ? C22 B39 464 J 1 HETATM 12 C C24 B39 . . . J 5 6.424 81.994 48.846 1 60.99 ? C24 B39 464 J 1 HETATM 13 C C26 B39 . . . J 5 6.907 82.419 46.515 1 60.29 ? C26 B39 464 J 1 HETATM 14 C C19 B39 . . . J 5 6.136 85.768 47.935 1 60.92 ? C19 B39 464 J 1 HETATM 15 C C23 B39 . . . J 5 6.197 83.35 49.066 1 60.49 ? C23 B39 464 J 1 HETATM 16 C C25 B39 . . . J 5 6.778 81.526 47.577 1 60.59 ? C25 B39 464 J 1 HETATM 17 C C1 B39 . . . J 5 6.747 84.983 45.786 1 59.71 ? C1 B39 464 J 1 HETATM 18 N N18 B39 . . . J 5 6.299 84.597 44.43 1 58.28 ? N18 B39 464 J 1 HETATM 19 N N16 B39 . . . J 5 5.822 84.866 42.214 1 55.98 ? N16 B39 464 J 1 HETATM 20 N N14 B39 . . . J 5 6.71 86.574 40.918 1 56.84 ? N14 B39 464 J 1 HETATM 21 C C12 B39 . . . J 5 7.31 86.43 43.188 1 55.76 ? C12 B39 464 J 1 HETATM 22 C C11 B39 . . . J 5 8.671 88.125 43.373 1 55.33 ? C11 B39 464 J 1 HETATM 23 N N7 B39 . . . J 5 8.249 88.084 42.112 1 55.18 ? N7 B39 464 J 1 HETATM 24 C C3 B39 . . . J 5 7.948 90.403 41.33 1 53.86 ? C3 B39 464 J 1 HETATM 25 C C2 B39 . . . J 5 9.055 91.458 41.236 1 53.48 ? C2 B39 464 J 1 HETATM 26 O O9 B39 . . . J 5 9.146 91.921 39.89 1 53.05 ? O9 B39 464 J 1 HETATM 27 O O27 B39 . . . J 5 11.773 92.64 41.752 1 50.01 ? O27 B39 464 J 1 HETATM 28 S S28 B39 . . . J 5 12.93 93.464 41.625 0.8 50.16 ? S28 B39 464 J 1 HETATM 29 O O29 B39 . . . J 5 13.027 93.962 40.221 0.8 50.2 ? O29 B39 464 J 1 HETATM 30 O O30 B39 . . . J 5 12.786 94.65 42.523 0.8 50.05 ? O30 B39 464 J 1 HETATM 31 N N31 B39 . . . J 5 14.306 92.662 42.025 0.8 50.12 ? N31 B39 464 J 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #