data_3H08 # _model_server_result.job_id MJMVt51cZxz7K36kEZlZLA _model_server_result.datetime_utc '2025-08-31 23:03:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3H08 # _exptl.entry_id 3H08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.38 _cell.angle_beta 99.43 _cell.angle_gamma 90.82 _cell.entry_id 3H08 _cell.length_a 33.457 _cell.length_b 33.388 _cell.length_c 66.072 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id HOH _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HOH _struct_conn.ptnr1_auth_seq_id 212 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.911 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3H08 _atom_sites.fract_transf_matrix[1][1] 0.029889 _atom_sites.fract_transf_matrix[1][2] 0.000428 _atom_sites.fract_transf_matrix[1][3] 0.005132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029954 _atom_sites.fract_transf_matrix[2][3] 0.00564 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 2 MG B 1 501 501 MG MG . E 3 HOH A 1 147 2 HOH HOH . E 3 HOH A 2 148 5 HOH HOH . E 3 HOH A 3 149 6 HOH HOH . E 3 HOH A 4 150 7 HOH HOH . E 3 HOH A 5 151 151 HOH HOH . E 3 HOH A 6 152 9 HOH HOH . E 3 HOH A 7 153 153 HOH HOH . E 3 HOH A 8 154 11 HOH HOH . E 3 HOH A 9 155 16 HOH HOH . E 3 HOH A 10 156 17 HOH HOH . E 3 HOH A 11 157 157 HOH HOH . E 3 HOH A 12 158 18 HOH HOH . E 3 HOH A 13 159 21 HOH HOH . E 3 HOH A 14 160 23 HOH HOH . E 3 HOH A 15 161 25 HOH HOH . E 3 HOH A 16 162 28 HOH HOH . E 3 HOH A 17 163 29 HOH HOH . E 3 HOH A 18 164 35 HOH HOH . E 3 HOH A 19 165 39 HOH HOH . E 3 HOH A 20 166 41 HOH HOH . E 3 HOH A 21 167 167 HOH HOH . E 3 HOH A 22 168 168 HOH HOH . E 3 HOH A 23 169 42 HOH HOH . E 3 HOH A 24 170 45 HOH HOH . E 3 HOH A 25 171 49 HOH HOH . E 3 HOH A 26 172 53 HOH HOH . E 3 HOH A 27 173 55 HOH HOH . E 3 HOH A 28 174 62 HOH HOH . E 3 HOH A 29 175 63 HOH HOH . E 3 HOH A 30 176 68 HOH HOH . E 3 HOH A 31 177 70 HOH HOH . E 3 HOH A 32 178 71 HOH HOH . E 3 HOH A 33 179 74 HOH HOH . E 3 HOH A 34 180 75 HOH HOH . E 3 HOH A 35 181 181 HOH HOH . E 3 HOH A 36 182 78 HOH HOH . E 3 HOH A 37 183 82 HOH HOH . E 3 HOH A 38 184 85 HOH HOH . E 3 HOH A 39 185 88 HOH HOH . E 3 HOH A 40 186 91 HOH HOH . E 3 HOH A 41 187 93 HOH HOH . E 3 HOH A 42 188 94 HOH HOH . E 3 HOH A 43 189 97 HOH HOH . E 3 HOH A 44 190 99 HOH HOH . E 3 HOH A 45 191 101 HOH HOH . E 3 HOH A 46 192 192 HOH HOH . E 3 HOH A 47 193 102 HOH HOH . E 3 HOH A 48 194 103 HOH HOH . E 3 HOH A 49 195 195 HOH HOH . E 3 HOH A 50 196 196 HOH HOH . E 3 HOH A 51 197 197 HOH HOH . E 3 HOH A 52 198 110 HOH HOH . E 3 HOH A 53 199 111 HOH HOH . E 3 HOH A 54 200 114 HOH HOH . E 3 HOH A 55 201 119 HOH HOH . E 3 HOH A 56 202 121 HOH HOH . E 3 HOH A 57 203 123 HOH HOH . E 3 HOH A 58 204 124 HOH HOH . E 3 HOH A 59 205 205 HOH HOH . E 3 HOH A 60 206 125 HOH HOH . E 3 HOH A 61 207 127 HOH HOH . E 3 HOH A 62 208 208 HOH HOH . E 3 HOH A 63 209 209 HOH HOH . E 3 HOH A 64 210 129 HOH HOH . E 3 HOH A 65 211 211 HOH HOH . E 3 HOH A 66 212 212 HOH HOH . E 3 HOH A 67 213 136 HOH HOH . E 3 HOH A 68 214 138 HOH HOH . E 3 HOH A 69 215 141 HOH HOH . E 3 HOH A 70 216 142 HOH HOH . E 3 HOH A 71 217 146 HOH HOH . E 3 HOH A 72 219 219 HOH HOH . E 3 HOH A 73 220 220 HOH HOH . E 3 HOH A 74 222 222 HOH HOH . E 3 HOH A 75 223 223 HOH HOH . E 3 HOH A 76 226 226 HOH HOH . E 3 HOH A 77 227 227 HOH HOH . E 3 HOH A 78 229 229 HOH HOH . E 3 HOH A 79 230 230 HOH HOH . E 3 HOH A 80 231 231 HOH HOH . E 3 HOH A 81 233 233 HOH HOH . E 3 HOH A 82 234 234 HOH HOH . E 3 HOH A 83 236 236 HOH HOH . E 3 HOH A 84 238 238 HOH HOH . E 3 HOH A 85 239 239 HOH HOH . E 3 HOH A 86 240 240 HOH HOH . E 3 HOH A 87 241 241 HOH HOH . E 3 HOH A 88 243 243 HOH HOH . E 3 HOH A 89 245 245 HOH HOH . E 3 HOH A 90 250 250 HOH HOH . E 3 HOH A 91 253 253 HOH HOH . E 3 HOH A 92 255 255 HOH HOH . E 3 HOH A 93 257 257 HOH HOH . E 3 HOH A 94 258 258 HOH HOH . E 3 HOH A 95 260 260 HOH HOH . E 3 HOH A 96 264 264 HOH HOH . E 3 HOH A 97 266 266 HOH HOH . E 3 HOH A 98 271 271 HOH HOH . E 3 HOH A 99 274 274 HOH HOH . E 3 HOH A 100 276 276 HOH HOH . E 3 HOH A 101 279 279 HOH HOH . E 3 HOH A 102 280 280 HOH HOH . E 3 HOH A 103 286 286 HOH HOH . E 3 HOH A 104 291 291 HOH HOH . E 3 HOH A 105 292 292 HOH HOH . F 3 HOH B 1 147 1 HOH HOH . F 3 HOH B 2 148 148 HOH HOH . F 3 HOH B 3 149 3 HOH HOH . F 3 HOH B 4 150 4 HOH HOH . F 3 HOH B 5 151 8 HOH HOH . F 3 HOH B 6 152 152 HOH HOH . F 3 HOH B 7 153 10 HOH HOH . F 3 HOH B 8 154 12 HOH HOH . F 3 HOH B 9 155 155 HOH HOH . F 3 HOH B 10 156 13 HOH HOH . F 3 HOH B 11 157 15 HOH HOH . F 3 HOH B 12 158 19 HOH HOH . F 3 HOH B 13 159 20 HOH HOH . F 3 HOH B 14 160 24 HOH HOH . F 3 HOH B 15 161 161 HOH HOH . F 3 HOH B 16 162 26 HOH HOH . F 3 HOH B 17 163 163 HOH HOH . F 3 HOH B 18 164 30 HOH HOH . F 3 HOH B 19 165 31 HOH HOH . F 3 HOH B 20 166 36 HOH HOH . F 3 HOH B 21 167 38 HOH HOH . F 3 HOH B 22 168 43 HOH HOH . F 3 HOH B 23 169 169 HOH HOH . F 3 HOH B 24 170 170 HOH HOH . F 3 HOH B 25 171 44 HOH HOH . F 3 HOH B 26 172 46 HOH HOH . F 3 HOH B 27 173 173 HOH HOH . F 3 HOH B 28 174 174 HOH HOH . F 3 HOH B 29 175 48 HOH HOH . F 3 HOH B 30 176 176 HOH HOH . F 3 HOH B 31 177 50 HOH HOH . F 3 HOH B 32 178 178 HOH HOH . F 3 HOH B 33 179 52 HOH HOH . F 3 HOH B 34 180 180 HOH HOH . F 3 HOH B 35 181 54 HOH HOH . F 3 HOH B 36 182 56 HOH HOH . F 3 HOH B 37 183 183 HOH HOH . F 3 HOH B 38 184 57 HOH HOH . F 3 HOH B 39 185 59 HOH HOH . F 3 HOH B 40 186 60 HOH HOH . F 3 HOH B 41 187 65 HOH HOH . F 3 HOH B 42 188 66 HOH HOH . F 3 HOH B 43 189 189 HOH HOH . F 3 HOH B 44 190 69 HOH HOH . F 3 HOH B 45 191 73 HOH HOH . F 3 HOH B 46 192 76 HOH HOH . F 3 HOH B 47 193 193 HOH HOH . F 3 HOH B 48 194 77 HOH HOH . F 3 HOH B 49 195 79 HOH HOH . F 3 HOH B 50 196 84 HOH HOH . F 3 HOH B 51 197 90 HOH HOH . F 3 HOH B 52 198 198 HOH HOH . F 3 HOH B 53 199 199 HOH HOH . F 3 HOH B 54 200 200 HOH HOH . F 3 HOH B 55 201 96 HOH HOH . F 3 HOH B 56 202 202 HOH HOH . F 3 HOH B 57 203 98 HOH HOH . F 3 HOH B 58 204 204 HOH HOH . F 3 HOH B 59 205 100 HOH HOH . F 3 HOH B 60 206 206 HOH HOH . F 3 HOH B 61 207 104 HOH HOH . F 3 HOH B 62 208 107 HOH HOH . F 3 HOH B 63 209 109 HOH HOH . F 3 HOH B 64 210 210 HOH HOH . F 3 HOH B 65 211 113 HOH HOH . F 3 HOH B 66 212 116 HOH HOH . F 3 HOH B 67 213 213 HOH HOH . F 3 HOH B 68 214 214 HOH HOH . F 3 HOH B 69 215 215 HOH HOH . F 3 HOH B 70 216 216 HOH HOH . F 3 HOH B 71 217 217 HOH HOH . F 3 HOH B 72 218 218 HOH HOH . F 3 HOH B 73 219 117 HOH HOH . F 3 HOH B 74 220 118 HOH HOH . F 3 HOH B 75 221 221 HOH HOH . F 3 HOH B 76 222 130 HOH HOH . F 3 HOH B 77 223 132 HOH HOH . F 3 HOH B 78 224 224 HOH HOH . F 3 HOH B 79 225 133 HOH HOH . F 3 HOH B 80 226 134 HOH HOH . F 3 HOH B 81 227 137 HOH HOH . F 3 HOH B 82 228 228 HOH HOH . F 3 HOH B 83 232 232 HOH HOH . F 3 HOH B 84 235 235 HOH HOH . F 3 HOH B 85 237 237 HOH HOH . F 3 HOH B 86 242 242 HOH HOH . F 3 HOH B 87 244 244 HOH HOH . F 3 HOH B 88 246 246 HOH HOH . F 3 HOH B 89 247 247 HOH HOH . F 3 HOH B 90 249 249 HOH HOH . F 3 HOH B 91 254 254 HOH HOH . F 3 HOH B 92 256 256 HOH HOH . F 3 HOH B 93 259 259 HOH HOH . F 3 HOH B 94 262 262 HOH HOH . F 3 HOH B 95 263 263 HOH HOH . F 3 HOH B 96 267 267 HOH HOH . F 3 HOH B 97 270 270 HOH HOH . F 3 HOH B 98 273 273 HOH HOH . F 3 HOH B 99 275 275 HOH HOH . F 3 HOH B 100 277 277 HOH HOH . F 3 HOH B 101 281 281 HOH HOH . F 3 HOH B 102 282 282 HOH HOH . F 3 HOH B 103 283 283 HOH HOH . F 3 HOH B 104 284 284 HOH HOH . F 3 HOH B 105 285 285 HOH HOH . F 3 HOH B 106 290 290 HOH HOH . F 3 HOH B 107 293 293 HOH HOH . F 3 HOH B 108 294 294 HOH HOH . F 3 HOH B 109 295 295 HOH HOH . F 3 HOH B 110 296 296 HOH HOH . F 3 HOH B 111 297 297 HOH HOH . F 3 HOH B 112 298 298 HOH HOH . F 3 HOH B 113 299 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.07 _atom_site.Cartn_y -1.416 _atom_site.Cartn_z 7.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #