data_3H0L # _model_server_result.job_id NiSGeeqjMnda_QAQ6KHxMg _model_server_result.datetime_utc '2024-12-21 18:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":907}' # _entry.id 3H0L # _exptl.entry_id 3H0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.118 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ASPARAGINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.02 _cell.angle_beta 90 _cell.angle_gamma 89.91 _cell.entry_id 3H0L _cell.length_a 127.482 _cell.length_b 131.012 _cell.length_c 154.668 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 PISA trimeric 3 author_and_software_defined_assembly 5 PISA trimeric 3 author_and_software_defined_assembly 6 PISA trimeric 3 author_and_software_defined_assembly 7 PISA trimeric 3 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,Y,Z,AA,BA 1 1 D,E,F,CA,DA,EA,FA 2 1 G,H,I,GA,HA,IA,JA 3 1 J,K,L,KA,LA,MA,NA 4 1 M,N,O,OA,PA,QA,RA 5 1 P,Q,R,SA,TA,UA,VA 6 1 S,T,U,WA,XA,YA,ZA 7 1 V,W,X,AB,BB,CB,DB 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Y N N ? 4 CA N N ? 4 GA N N ? 4 KA N N ? 4 OA N N ? 4 SA N N ? 4 WA N N ? 4 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 171 A SER 171 1_555 Y CG ASN . A ASN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale2 D OG SER 171 D SER 171 1_555 CA CG ASN . D ASN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale3 G OG SER 171 G SER 171 1_555 GA CG ASN . G ASN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale4 J OG SER 171 J SER 171 1_555 KA CG ASN . J ASN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale5 M OG SER 171 M SER 171 1_555 OA CG ASN . M ASN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 P OG SER 171 P SER 171 1_555 SA CG ASN . P ASN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale7 S OG SER 171 S SER 171 1_555 WA CG ASN . S ASN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale8 V OG SER 171 V SER 171 1_555 AB CG ASN . V ASN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 B NE2 HIS 14 B HIS 14 1_555 AA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 B SG CYS 25 B CYS 25 1_555 BA ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 B SG CYS 27 B CYS 27 1_555 BA ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 B SG CYS 40 B CYS 40 1_555 BA ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc5 B SG CYS 43 B CYS 43 1_555 BA ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B OE2 GLU 127 B GLU 127 1_555 AA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc7 B OE1 GLU 153 B GLU 153 1_555 AA MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc8 E NE2 HIS 14 E HIS 14 1_555 EA MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 E SG CYS 25 E CYS 25 1_555 FA ZN ZN . E ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 E SG CYS 27 E CYS 27 1_555 FA ZN ZN . E ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 E SG CYS 40 E CYS 40 1_555 FA ZN ZN . E ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc12 E SG CYS 43 E CYS 43 1_555 FA ZN ZN . E ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc13 E OE2 GLU 127 E GLU 127 1_555 EA MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 E OE1 GLU 153 E GLU 153 1_555 EA MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc15 H NE2 HIS 14 H HIS 14 1_555 IA MG MG . H MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc16 H SG CYS 25 H CYS 25 1_555 JA ZN ZN . H ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc17 H SG CYS 27 H CYS 27 1_555 JA ZN ZN . H ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc18 H SG CYS 40 H CYS 40 1_555 JA ZN ZN . H ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc19 H SG CYS 43 H CYS 43 1_555 JA ZN ZN . H ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc20 H OE1 GLU 153 H GLU 153 1_555 IA MG MG . H MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc21 K NE2 HIS 14 K HIS 14 1_555 MA MG MG . K MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc22 K SG CYS 25 K CYS 25 1_555 NA ZN ZN . K ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc23 K SG CYS 27 K CYS 27 1_555 NA ZN ZN . K ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc24 K SG CYS 40 K CYS 40 1_555 NA ZN ZN . K ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc25 K SG CYS 43 K CYS 43 1_555 NA ZN ZN . K ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc26 K OE2 GLU 127 K GLU 127 1_555 MA MG MG . K MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc27 K OE1 GLU 153 K GLU 153 1_555 MA MG MG . K MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc28 N NE2 HIS 14 N HIS 14 1_555 QA MG MG . N MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc29 N SG CYS 25 N CYS 25 1_555 RA ZN ZN . N ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc30 N SG CYS 27 N CYS 27 1_555 RA ZN ZN . N ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc31 N SG CYS 40 N CYS 40 1_555 RA ZN ZN . N ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc32 N SG CYS 43 N CYS 43 1_555 RA ZN ZN . N ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc33 N OE2 GLU 127 N GLU 127 1_555 QA MG MG . N MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc34 N OE1 GLU 153 N GLU 153 1_555 QA MG MG . N MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc35 Q NE2 HIS 14 Q HIS 14 1_555 UA MG MG . Q MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc36 Q SG CYS 25 Q CYS 25 1_555 VA ZN ZN . Q ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc37 Q SG CYS 27 Q CYS 27 1_555 VA ZN ZN . Q ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc38 Q SG CYS 40 Q CYS 40 1_555 VA ZN ZN . Q ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc39 Q SG CYS 43 Q CYS 43 1_555 VA ZN ZN . Q ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc40 Q OE2 GLU 127 Q GLU 127 1_555 UA MG MG . Q MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc41 Q OE1 GLU 153 Q GLU 153 1_555 UA MG MG . Q MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc42 T NE2 HIS 14 T HIS 14 1_555 YA MG MG . T MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc43 T SG CYS 25 T CYS 25 1_555 ZA ZN ZN . T ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc44 T SG CYS 27 T CYS 27 1_555 ZA ZN ZN . T ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc45 T SG CYS 40 T CYS 40 1_555 ZA ZN ZN . T ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc46 T SG CYS 43 T CYS 43 1_555 ZA ZN ZN . T ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc47 T OE2 GLU 127 T GLU 127 1_555 YA MG MG . T MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc48 T OE1 GLU 153 T GLU 153 1_555 YA MG MG . T MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc49 W NE2 HIS 14 W HIS 14 1_555 CB MG MG . W MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc50 W SG CYS 25 W CYS 25 1_555 DB ZN ZN . W ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc51 W SG CYS 27 W CYS 27 1_555 DB ZN ZN . W ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc52 W SG CYS 40 W CYS 40 1_555 DB ZN ZN . W ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc53 W SG CYS 43 W CYS 43 1_555 DB ZN ZN . W ZN 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc54 W OE2 GLU 127 W GLU 127 1_555 CB MG MG . W MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc55 W OE1 GLU 153 W GLU 153 1_555 CB MG MG . W MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C4 H8 N2 O3' _chem_comp.formula_weight 132.118 _chem_comp.id ASN _chem_comp.mon_nstd_flag y _chem_comp.name ASPARAGINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASN sing 83 n n N H ASN sing 84 n n N H2 ASN sing 85 n n CA C ASN sing 86 n n CA CB ASN sing 87 n n CA HA ASN sing 88 n n C O ASN doub 89 n n C OXT ASN sing 90 n n CB CG ASN sing 91 n n CB HB2 ASN sing 92 n n CB HB3 ASN sing 93 n n CG OD1 ASN doub 94 n n CG ND2 ASN sing 95 n n ND2 HD21 ASN sing 96 n n ND2 HD22 ASN sing 97 n n OXT HXT ASN sing 98 n n # _atom_sites.entry_id 3H0L _atom_sites.fract_transf_matrix[1][1] 0.007844 _atom_sites.fract_transf_matrix[1][2] -0.000012 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007633 _atom_sites.fract_transf_matrix[2][3] 0.000002 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 4 ASN A 1 901 901 ASN ASN . Z 5 ADP B 1 701 701 ADP ADP . AA 6 MG B 1 801 801 MG MG . BA 7 ZN B 1 901 901 ZN ZN . CA 4 ASN D 1 902 902 ASN ASN . DA 5 ADP E 1 702 702 ADP ADP . EA 6 MG E 1 802 802 MG MG . FA 7 ZN E 1 902 902 ZN ZN . GA 4 ASN G 1 903 903 ASN ASN . HA 5 ADP H 1 703 703 ADP ADP . IA 6 MG H 1 803 803 MG MG . JA 7 ZN H 1 903 903 ZN ZN . KA 4 ASN J 1 904 904 ASN ASN . LA 5 ADP K 1 704 704 ADP ADP . MA 6 MG K 1 804 804 MG MG . NA 7 ZN K 1 904 904 ZN ZN . OA 4 ASN M 1 905 905 ASN ASN . PA 5 ADP N 1 705 705 ADP ADP . QA 6 MG N 1 805 805 MG MG . RA 7 ZN N 1 905 905 ZN ZN . SA 4 ASN P 1 906 906 ASN ASN . TA 5 ADP Q 1 706 706 ADP ADP . UA 6 MG Q 1 806 806 MG MG . VA 7 ZN Q 1 906 906 ZN ZN . WA 4 ASN S 1 907 907 ASN ASN . XA 5 ADP T 1 707 707 ADP ADP . YA 6 MG T 1 807 807 MG MG . ZA 7 ZN T 1 907 907 ZN ZN . AB 4 ASN V 1 908 908 ASN ASN . BB 5 ADP W 1 708 708 ADP ADP . CB 6 MG W 1 808 808 MG MG . DB 7 ZN W 1 908 908 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASN . . . WA 4 -35.442 89.548 9.169 1 33.01 ? N ASN 907 S 1 HETATM 2 C CA ASN . . . WA 4 -36.429 89.382 8.124 1 32.22 ? CA ASN 907 S 1 HETATM 3 C C ASN . . . WA 4 -36.926 90.786 7.701 1 33.42 ? C ASN 907 S 1 HETATM 4 O O ASN . . . WA 4 -37.239 91.079 6.538 1 33.62 ? O ASN 907 S 1 HETATM 5 C CB ASN . . . WA 4 -37.581 88.556 8.656 1 32 ? CB ASN 907 S 1 HETATM 6 C CG ASN . . . WA 4 -37.205 87.06 8.89 1 33.46 ? CG ASN 907 S 1 HETATM 7 O OD1 ASN . . . WA 4 -36.262 86.549 8.282 1 28.41 ? OD1 ASN 907 S 1 HETATM 8 O OXT ASN . . . WA 4 -37.076 91.667 8.541 1 32.1 ? OXT ASN 907 S 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #