data_3H10 # _model_server_result.job_id l-XmBLBpGcHstq-eLw6p6A _model_server_result.datetime_utc '2024-11-16 21:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3h10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3H10 # _exptl.entry_id 3H10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.009 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-chloro-7-(2,6-difluorophenyl)-N-{4-[(4-methylpiperazin-1-yl)carbonyl]phenyl}-5H-pyrimido[5,4-d][2]benzazepin-2-amine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3H10 _cell.length_a 87.751 _cell.length_b 88.98 _cell.length_c 122.479 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3H10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C30 H25 Cl F2 N6 O' _chem_comp.formula_weight 559.009 _chem_comp.id 97B _chem_comp.mon_nstd_flag . _chem_comp.name 9-chloro-7-(2,6-difluorophenyl)-N-{4-[(4-methylpiperazin-1-yl)carbonyl]phenyl}-5H-pyrimido[5,4-d][2]benzazepin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C20 97B doub 1 n n C20 N5 97B sing 2 n n C20 C17 97B sing 3 n n N5 C24 97B sing 4 n n N5 C21 97B sing 5 n n C24 C23 97B sing 6 n n C23 N6 97B sing 7 n n N6 C25 97B sing 8 n n N6 C22 97B sing 9 n n C22 C21 97B sing 10 n n C17 C18 97B doub 11 n y C17 C16 97B sing 12 n y C18 C19 97B sing 13 n y C19 C14 97B doub 14 n y C16 C15 97B doub 15 n y C15 C14 97B sing 16 n y C14 N4 97B sing 17 n n N4 C13 97B sing 18 n n C13 N3 97B doub 19 n y C13 N2 97B sing 20 n y N3 C10 97B sing 21 n y N2 C12 97B doub 22 n y C12 C9 97B sing 23 n y C9 C10 97B doub 24 n y C9 C8 97B sing 25 n n C10 C3 97B sing 26 n y C8 N1 97B sing 27 n n N1 C7 97B doub 28 n n C7 C2 97B sing 29 n n C7 C11 97B sing 30 n n C2 C3 97B doub 31 n y C2 C1 97B sing 32 n y C3 C4 97B sing 33 n y C4 C5 97B doub 34 n y C5 C6 97B sing 35 n y C1 C6 97B doub 36 n y C6 CL1 97B sing 37 n n C11 C26 97B doub 38 n y C11 C30 97B sing 39 n y C26 F2 97B sing 40 n n C26 C27 97B sing 41 n y C27 C28 97B doub 42 n y C28 C29 97B sing 43 n y C29 C30 97B doub 44 n y C30 F1 97B sing 45 n n C24 H24 97B sing 46 n n C24 H24A 97B sing 47 n n C23 H23 97B sing 48 n n C23 H23A 97B sing 49 n n C25 H25 97B sing 50 n n C25 H25A 97B sing 51 n n C25 H25B 97B sing 52 n n C22 H22 97B sing 53 n n C22 H22A 97B sing 54 n n C21 H21 97B sing 55 n n C21 H21A 97B sing 56 n n C18 H18 97B sing 57 n n C19 H19 97B sing 58 n n C16 H16 97B sing 59 n n C15 H15 97B sing 60 n n N4 HN4 97B sing 61 n n C12 H12 97B sing 62 n n C8 H8 97B sing 63 n n C8 H8A 97B sing 64 n n C4 H4 97B sing 65 n n C5 H5 97B sing 66 n n C1 H1 97B sing 67 n n C27 H27 97B sing 68 n n C28 H28 97B sing 69 n n C29 H29 97B sing 70 n n # _atom_sites.entry_id 3H10 _atom_sites.fract_transf_matrix[1][1] 0.011396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 97B A 1 1 1 97B XXX . E 2 97B B 1 2 2 97B XXX . F 2 97B D 1 3 3 97B XXX . G 3 HOH A 1 2 2 HOH HOH . G 3 HOH A 2 7 7 HOH HOH . G 3 HOH A 3 8 8 HOH HOH . G 3 HOH A 4 9 9 HOH HOH . G 3 HOH A 5 11 11 HOH HOH . G 3 HOH A 6 14 14 HOH HOH . G 3 HOH A 7 15 15 HOH HOH . G 3 HOH A 8 18 18 HOH HOH . G 3 HOH A 9 20 20 HOH HOH . G 3 HOH A 10 21 21 HOH HOH . G 3 HOH A 11 23 23 HOH HOH . G 3 HOH A 12 24 24 HOH HOH . G 3 HOH A 13 28 28 HOH HOH . G 3 HOH A 14 30 30 HOH HOH . G 3 HOH A 15 31 31 HOH HOH . G 3 HOH A 16 33 33 HOH HOH . G 3 HOH A 17 35 35 HOH HOH . G 3 HOH A 18 36 36 HOH HOH . G 3 HOH A 19 37 37 HOH HOH . G 3 HOH A 20 40 40 HOH HOH . G 3 HOH A 21 44 44 HOH HOH . G 3 HOH A 22 45 45 HOH HOH . G 3 HOH A 23 48 48 HOH HOH . G 3 HOH A 24 49 49 HOH HOH . G 3 HOH A 25 52 52 HOH HOH . G 3 HOH A 26 55 55 HOH HOH . G 3 HOH A 27 59 59 HOH HOH . G 3 HOH A 28 60 60 HOH HOH . G 3 HOH A 29 62 62 HOH HOH . G 3 HOH A 30 66 66 HOH HOH . G 3 HOH A 31 71 71 HOH HOH . G 3 HOH A 32 72 72 HOH HOH . G 3 HOH A 33 74 74 HOH HOH . G 3 HOH A 34 77 77 HOH HOH . G 3 HOH A 35 78 78 HOH HOH . G 3 HOH A 36 84 84 HOH HOH . G 3 HOH A 37 86 86 HOH HOH . G 3 HOH A 38 87 87 HOH HOH . G 3 HOH A 39 89 89 HOH HOH . G 3 HOH A 40 93 93 HOH HOH . G 3 HOH A 41 97 97 HOH HOH . G 3 HOH A 42 99 99 HOH HOH . G 3 HOH A 43 101 101 HOH HOH . G 3 HOH A 44 102 102 HOH HOH . G 3 HOH A 45 105 105 HOH HOH . G 3 HOH A 46 111 111 HOH HOH . G 3 HOH A 47 112 112 HOH HOH . G 3 HOH A 48 118 118 HOH HOH . G 3 HOH A 49 121 121 HOH HOH . G 3 HOH A 50 122 122 HOH HOH . G 3 HOH A 51 392 126 HOH HOH . G 3 HOH A 52 393 127 HOH HOH . G 3 HOH A 53 394 129 HOH HOH . G 3 HOH A 54 395 131 HOH HOH . G 3 HOH A 55 396 132 HOH HOH . G 3 HOH A 56 397 138 HOH HOH . G 3 HOH A 57 398 140 HOH HOH . G 3 HOH A 58 399 144 HOH HOH . G 3 HOH A 59 400 146 HOH HOH . G 3 HOH A 60 401 147 HOH HOH . H 3 HOH B 1 3 3 HOH HOH . H 3 HOH B 2 6 6 HOH HOH . H 3 HOH B 3 10 10 HOH HOH . H 3 HOH B 4 12 12 HOH HOH . H 3 HOH B 5 16 16 HOH HOH . H 3 HOH B 6 17 17 HOH HOH . H 3 HOH B 7 22 22 HOH HOH . H 3 HOH B 8 26 26 HOH HOH . H 3 HOH B 9 27 27 HOH HOH . H 3 HOH B 10 29 29 HOH HOH . H 3 HOH B 11 41 41 HOH HOH . H 3 HOH B 12 42 42 HOH HOH . H 3 HOH B 13 43 43 HOH HOH . H 3 HOH B 14 51 51 HOH HOH . H 3 HOH B 15 53 53 HOH HOH . H 3 HOH B 16 54 54 HOH HOH . H 3 HOH B 17 56 56 HOH HOH . H 3 HOH B 18 57 57 HOH HOH . H 3 HOH B 19 58 58 HOH HOH . H 3 HOH B 20 61 61 HOH HOH . H 3 HOH B 21 64 64 HOH HOH . H 3 HOH B 22 68 68 HOH HOH . H 3 HOH B 23 69 69 HOH HOH . H 3 HOH B 24 73 73 HOH HOH . H 3 HOH B 25 75 75 HOH HOH . H 3 HOH B 26 76 76 HOH HOH . H 3 HOH B 27 80 80 HOH HOH . H 3 HOH B 28 83 83 HOH HOH . H 3 HOH B 29 88 88 HOH HOH . H 3 HOH B 30 92 92 HOH HOH . H 3 HOH B 31 95 95 HOH HOH . H 3 HOH B 32 98 98 HOH HOH . H 3 HOH B 33 104 104 HOH HOH . H 3 HOH B 34 106 106 HOH HOH . H 3 HOH B 35 107 107 HOH HOH . H 3 HOH B 36 113 113 HOH HOH . H 3 HOH B 37 119 119 HOH HOH . H 3 HOH B 38 123 123 HOH HOH . H 3 HOH B 39 392 130 HOH HOH . H 3 HOH B 40 393 134 HOH HOH . H 3 HOH B 41 394 136 HOH HOH . H 3 HOH B 42 395 139 HOH HOH . H 3 HOH B 43 396 141 HOH HOH . H 3 HOH B 44 397 143 HOH HOH . H 3 HOH B 45 398 145 HOH HOH . I 3 HOH D 1 1 1 HOH HOH . I 3 HOH D 2 4 4 HOH HOH . I 3 HOH D 3 5 5 HOH HOH . I 3 HOH D 4 13 13 HOH HOH . I 3 HOH D 5 19 19 HOH HOH . I 3 HOH D 6 25 25 HOH HOH . I 3 HOH D 7 32 32 HOH HOH . I 3 HOH D 8 34 34 HOH HOH . I 3 HOH D 9 38 38 HOH HOH . I 3 HOH D 10 39 39 HOH HOH . I 3 HOH D 11 46 46 HOH HOH . I 3 HOH D 12 47 47 HOH HOH . I 3 HOH D 13 50 50 HOH HOH . I 3 HOH D 14 63 63 HOH HOH . I 3 HOH D 15 65 65 HOH HOH . I 3 HOH D 16 67 67 HOH HOH . I 3 HOH D 17 70 70 HOH HOH . I 3 HOH D 18 79 79 HOH HOH . I 3 HOH D 19 81 81 HOH HOH . I 3 HOH D 20 82 82 HOH HOH . I 3 HOH D 21 85 85 HOH HOH . I 3 HOH D 22 90 90 HOH HOH . I 3 HOH D 23 91 91 HOH HOH . I 3 HOH D 24 94 94 HOH HOH . I 3 HOH D 25 96 96 HOH HOH . I 3 HOH D 26 100 100 HOH HOH . I 3 HOH D 27 103 103 HOH HOH . I 3 HOH D 28 108 108 HOH HOH . I 3 HOH D 29 109 109 HOH HOH . I 3 HOH D 30 110 110 HOH HOH . I 3 HOH D 31 114 114 HOH HOH . I 3 HOH D 32 115 115 HOH HOH . I 3 HOH D 33 116 116 HOH HOH . I 3 HOH D 34 117 117 HOH HOH . I 3 HOH D 35 120 120 HOH HOH . I 3 HOH D 36 392 124 HOH HOH . I 3 HOH D 37 393 125 HOH HOH . I 3 HOH D 38 394 128 HOH HOH . I 3 HOH D 39 395 133 HOH HOH . I 3 HOH D 40 396 135 HOH HOH . I 3 HOH D 41 397 137 HOH HOH . I 3 HOH D 42 398 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 97B . . . D 2 -0.436 -14.091 -31.4 1 55.32 ? O1 97B 1 A 1 HETATM 2 C C20 97B . . . D 2 0.22 -15.038 -30.964 1 47.17 ? C20 97B 1 A 1 HETATM 3 N N5 97B . . . D 2 -0.343 -16.257 -30.922 1 65.28 ? N5 97B 1 A 1 HETATM 4 C C24 97B . . . D 2 -1.741 -16.43 -30.502 1 72.36 ? C24 97B 1 A 1 HETATM 5 C C23 97B . . . D 2 -1.76 -17.493 -29.392 1 77.96 ? C23 97B 1 A 1 HETATM 6 N N6 97B . . . D 2 -1.157 -18.752 -29.887 1 79.2 ? N6 97B 1 A 1 HETATM 7 C C25 97B . . . D 2 -1.221 -19.823 -28.873 1 79.67 ? C25 97B 1 A 1 HETATM 8 C C22 97B . . . D 2 0.245 -18.491 -30.289 1 74.51 ? C22 97B 1 A 1 HETATM 9 C C21 97B . . . D 2 0.336 -17.459 -31.415 1 67.22 ? C21 97B 1 A 1 HETATM 10 C C17 97B . . . D 2 1.649 -14.859 -30.465 1 41.15 ? C17 97B 1 A 1 HETATM 11 C C18 97B . . . D 2 2.636 -14.348 -31.311 1 40.21 ? C18 97B 1 A 1 HETATM 12 C C19 97B . . . D 2 3.94 -14.186 -30.868 1 37.89 ? C19 97B 1 A 1 HETATM 13 C C16 97B . . . D 2 2.003 -15.241 -29.168 1 39.58 ? C16 97B 1 A 1 HETATM 14 C C15 97B . . . D 2 3.315 -15.083 -28.722 1 38.68 ? C15 97B 1 A 1 HETATM 15 C C14 97B . . . D 2 4.288 -14.543 -29.568 1 31.19 ? C14 97B 1 A 1 HETATM 16 N N4 97B . . . D 2 5.413 -14.095 -28.95 1 25.34 ? N4 97B 1 A 1 HETATM 17 C C13 97B . . . D 2 6.529 -13.589 -29.515 1 20.62 ? C13 97B 1 A 1 HETATM 18 N N3 97B . . . D 2 6.608 -13.299 -30.844 1 23.08 ? N3 97B 1 A 1 HETATM 19 N N2 97B . . . D 2 7.572 -13.332 -28.711 1 20.39 ? N2 97B 1 A 1 HETATM 20 C C12 97B . . . D 2 8.708 -12.828 -29.223 1 18.49 ? C12 97B 1 A 1 HETATM 21 C C9 97B . . . D 2 8.807 -12.53 -30.567 1 20.58 ? C9 97B 1 A 1 HETATM 22 C C10 97B . . . D 2 7.731 -12.803 -31.384 1 22.13 ? C10 97B 1 A 1 HETATM 23 C C8 97B . . . D 2 10.104 -11.973 -31.14 1 23.61 ? C8 97B 1 A 1 HETATM 24 N N1 97B . . . D 2 9.853 -10.681 -31.734 1 24.37 ? N1 97B 1 A 1 HETATM 25 C C7 97B . . . D 2 9.124 -10.415 -32.732 1 28.95 ? C7 97B 1 A 1 HETATM 26 C C2 97B . . . D 2 8.354 -11.46 -33.474 1 27.44 ? C2 97B 1 A 1 HETATM 27 C C3 97B . . . D 2 7.72 -12.545 -32.849 1 24.94 ? C3 97B 1 A 1 HETATM 28 C C4 97B . . . D 2 6.983 -13.446 -33.608 1 27.21 ? C4 97B 1 A 1 HETATM 29 C C5 97B . . . D 2 6.896 -13.263 -34.958 1 24.2 ? C5 97B 1 A 1 HETATM 30 C C1 97B . . . D 2 8.248 -11.281 -34.847 1 25.63 ? C1 97B 1 A 1 HETATM 31 C C6 97B . . . D 2 7.512 -12.206 -35.574 1 25.46 ? C6 97B 1 A 1 HETATM 32 CL CL1 97B . . . D 2 7.395 -12.027 -37.33 1 33.52 ? CL1 97B 1 A 1 HETATM 33 C C11 97B . . . D 2 8.917 -9 -33.2 1 28.32 ? C11 97B 1 A 1 HETATM 34 C C26 97B . . . D 2 7.652 -8.436 -33.111 1 29.27 ? C26 97B 1 A 1 HETATM 35 F F2 97B . . . D 2 6.641 -9.157 -32.587 1 31.35 ? F2 97B 1 A 1 HETATM 36 C C27 97B . . . D 2 7.439 -7.13 -33.551 1 32.33 ? C27 97B 1 A 1 HETATM 37 C C28 97B . . . D 2 8.485 -6.382 -34.086 1 30.34 ? C28 97B 1 A 1 HETATM 38 C C29 97B . . . D 2 9.741 -6.96 -34.196 1 28.51 ? C29 97B 1 A 1 HETATM 39 C C30 97B . . . D 2 9.942 -8.264 -33.752 1 30.31 ? C30 97B 1 A 1 HETATM 40 F F1 97B . . . D 2 11.119 -8.833 -33.851 1 29.82 ? F1 97B 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #